2024-04-13 15:48 ftp://ftp.de.debian.org/debian/pool/main/u/unanimity/unanimity_3.3.0+dfsg.orig.tar.xz cppcheck-options: --library=posix --library=gnu --library=bsd --library=boost --library=googletest --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning -D__GNUC__ --platform=unix64 -j4 platform: Linux-6.1.0-18-amd64-x86_64-with-glibc2.36 python: 3.11.2 client-version: 1.3.56 compiler: g++ (Debian 12.2.0-14) 12.2.0 cppcheck: head 2.13.0 head-info: fe3bf91 (2024-04-13 15:32:21 +0200) count: 528 256 elapsed-time: 7.7 6.2 head-timing-info: old-timing-info: head results: unanimity-3.3.0/src/ChemistryMapping.cpp:32:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mapping [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ChemistryTriple.cpp:26:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable xpressive [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ConsensusSettings.cpp:198:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NoPolish [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ConsensusSettings.cpp:283:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAX_NPROC [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelNaming.h:150:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Coverage.cpp:13:43: style: Parameter 'tStart' can be declared as pointer to const [constParameterPointer] unanimity-3.3.0/src/Coverage.cpp:13:69: style: Parameter 'tEnd' can be declared as pointer to const [constParameterPointer] unanimity-3.3.0/src/ModelNaming.h:17:5: style: Class 'ModelNamingError' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelNaming.h:33:5: style: Struct 'ModelForm' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelNaming.h:38:5: style: Struct 'ModelForm' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelNaming.h:86:5: style: Struct 'ModelOrigin' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelNaming.h:91:5: style: Struct 'ModelOrigin' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelNaming.h:134:5: style: Struct 'ModelName' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelFactory.h:73:0: style: Consider using std::find_if algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/IntervalMask.cpp:18:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INSERTION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:27:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ScoreDiff [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:47:78: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ScoreDiff [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:78:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:99:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:116:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:168:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_FLOAT_INF [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:177:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_FLOAT_INF [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:187:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:212:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:226:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:228:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:230:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:248:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TEMPLATE_TOO_SMALL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:254:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:256:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:265:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:286:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Integrator.cpp:304:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFactory.h:77:42: style: The function 'Create' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride] unanimity-3.3.0/src/ModelFactory.h:42:42: note: Virtual function in base class unanimity-3.3.0/src/ModelFactory.h:77:42: note: Function in derived class unanimity-3.3.0/src/ModelFactory.cpp:32:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFactory.cpp:60:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFactory.cpp:80:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable second [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFactory.cpp:110:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFactory.cpp:133:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFormFactory.cpp:57:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable second [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFormFactory.h:57:5: style: Class 'ModelFormCreatorImpl' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelFormFactory.h:63:43: style: The function 'LoadParams' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride] unanimity-3.3.0/src/ModelFormFactory.h:29:43: note: Virtual function in base class unanimity-3.3.0/src/ModelFormFactory.h:63:43: note: Function in derived class unanimity-3.3.0/src/ModelFormFactory.cpp:50:37: style: Variable 'e' can be declared as reference to const [constVariableReference] unanimity-3.3.0/src/Mutation.cpp:16:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Mutation.cpp:21:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INSERTION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Mutation.cpp:26:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INSERTION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Mutation.cpp:31:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSTITUTION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Mutation.cpp:36:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSTITUTION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Mutation.cpp:47:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Mutation.cpp:75:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Mutation.cpp:133:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelSelection.cpp:35:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelSelection.cpp:45:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelSelection.cpp:62:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/matrix/ScaledMatrix.h:81:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable maxProvided [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:219:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Idx [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:354:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:452:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:515:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Idx [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:651:77: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:762:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable scoreDiff_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:23:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable curState_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:32:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:44:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:59:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Strand [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:74:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_DBL_INF [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:105:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_DBL_INF [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:117:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_DBL_INF [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:128:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_INT_INF [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:161:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable curState_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:169:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MANUALLY_RELEASED [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:171:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INVALID [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Evaluator.cpp:213:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelSelection.cpp:76:22: portability: Non reentrant function 'readdir' called. For threadsafe applications it is recommended to use the reentrant replacement function 'readdir_r'. [prohibitedreaddirCalled] unanimity-3.3.0/src/ModelSelection.cpp:68:25: style: The scope of the variable 'dot' can be reduced. [variableScope] unanimity-3.3.0/src/ModelSelection.cpp:75:24: style: Variable 'ep' can be declared as pointer to const [constVariablePointer] unanimity-3.3.0/src/MutationTracker.h:64:76: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/MutationTracker.h:187:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:72:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ambiguousBaseContainsPureBase [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:149:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:174:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ScoreComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:199:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:311:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_INFO [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/EvaluatorImpl.cpp:182:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EXTEND_BUFFER_COLUMNS [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:395:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/EvaluatorImpl.cpp:260:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Align [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:472:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_ERROR [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Polish.cpp:510:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_ERROR [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/MutationTracker.h:56:5: style: Class 'MutationTracker' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/Sequence.cpp:65:16: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/SparsePoa.cpp:47:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable graph_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SparsePoa.cpp:55:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SparsePoa.cpp:84:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SparsePoa.cpp:120:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SparsePoa.cpp:122:21: style: Variable 'css' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/SubreadResultCounter.cpp:24:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AlphaBetaMismatch [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SubreadResultCounter.cpp:40:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AlphaBetaMismatch [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SubreadResultCounter.cpp:64:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Success [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SubreadResultCounter.cpp:92:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Other [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/SubreadResultCounter.cpp:98:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Success [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:23:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable start_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:36:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Base [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:42:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:57:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pinEnd_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:76:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:160:63: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Idx [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:199:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pinStart_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:223:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable end_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:237:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable start_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:294:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable tpl_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:320:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pinStart_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:369:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable end_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:377:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutOff_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:382:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutStart_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Template.cpp:183:23: style: Variable 'E2_D' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/Timer.cpp:19:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable tick [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Timer.cpp:27:74: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable tick [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Timer.cpp:47:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable tick [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Utility.cpp:57:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable IPD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Utility.cpp:51:5: style: Consider using std::all_of or std::none_of algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/Utility.cpp:52:9: style: Consider using std::all_of or std::none_of algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/align/AffineAlignment.cpp:93:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FLT_MAX [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:462:22: warning: Invalid std::log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg] unanimity-3.3.0/src/Recursor.h:441:17: note: Assignment 'v=0.0', assigned value is 0.0 unanimity-3.3.0/src/Recursor.h:446:34: note: Assuming condition is false unanimity-3.3.0/src/Recursor.h:462:22: note: Invalid argument unanimity-3.3.0/src/matrix/ScaledMatrix.h:70:42: warning: The class 'ScaledMatrix' defines member function with name 'Null' also defined in its parent class 'SparseMatrix'. [duplInheritedMember] unanimity-3.3.0/src/matrix/SparseMatrix.h:92:42: note: Parent function 'SparseMatrix::Null' unanimity-3.3.0/src/matrix/ScaledMatrix.h:70:42: note: Derived function 'ScaledMatrix::Null' unanimity-3.3.0/src/Recursor.h:52:5: style: Class 'Recursor' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/Recursor.h:548:50: style: The if condition is the same as the previous if condition [duplicateCondition] unanimity-3.3.0/src/Recursor.h:540:50: note: First condition unanimity-3.3.0/src/Recursor.h:548:50: note: Second condition unanimity-3.3.0/src/matrix/SparseMatrix.h:120:64: style:inconclusive: Function 'FinishEditingColumn' argument 2 names different: declaration 'usedBegin' definition 'usedRowsBegin'. [funcArgNamesDifferent] unanimity-3.3.0/src/matrix/SparseMatrix.h:47:47: note: Function 'FinishEditingColumn' argument 2 names different: declaration 'usedBegin' definition 'usedRowsBegin'. unanimity-3.3.0/src/matrix/SparseMatrix.h:120:64: note: Function 'FinishEditingColumn' argument 2 names different: declaration 'usedBegin' definition 'usedRowsBegin'. unanimity-3.3.0/src/matrix/SparseMatrix.h:120:86: style:inconclusive: Function 'FinishEditingColumn' argument 3 names different: declaration 'usedEnd' definition 'usedRowsEnd'. [funcArgNamesDifferent] unanimity-3.3.0/src/matrix/SparseMatrix.h:47:65: note: Function 'FinishEditingColumn' argument 3 names different: declaration 'usedEnd' definition 'usedRowsEnd'. unanimity-3.3.0/src/matrix/SparseMatrix.h:120:86: note: Function 'FinishEditingColumn' argument 3 names different: declaration 'usedEnd' definition 'usedRowsEnd'. unanimity-3.3.0/src/matrix/ScaledMatrix.h:110:53: style:inconclusive: Function 'GetLogProdScales' argument 1 names different: declaration 's' definition 'beginColumn'. [funcArgNamesDifferent] unanimity-3.3.0/src/matrix/ScaledMatrix.h:55:36: note: Function 'GetLogProdScales' argument 1 names different: declaration 's' definition 'beginColumn'. unanimity-3.3.0/src/matrix/ScaledMatrix.h:110:53: note: Function 'GetLogProdScales' argument 1 names different: declaration 's' definition 'beginColumn'. unanimity-3.3.0/src/matrix/ScaledMatrix.h:110:73: style:inconclusive: Function 'GetLogProdScales' argument 2 names different: declaration 'e' definition 'endColumn'. [funcArgNamesDifferent] unanimity-3.3.0/src/matrix/ScaledMatrix.h:55:46: note: Function 'GetLogProdScales' argument 2 names different: declaration 'e' definition 'endColumn'. unanimity-3.3.0/src/matrix/ScaledMatrix.h:110:73: note: Function 'GetLogProdScales' argument 2 names different: declaration 'e' definition 'endColumn'. unanimity-3.3.0/src/Recursor.h:587:87: style:inconclusive: Function 'ExtendBeta' argument 3 names different: declaration 'endColumn' definition 'lastColumn'. [funcArgNamesDifferent] unanimity-3.3.0/src/Recursor.h:137:72: note: Function 'ExtendBeta' argument 3 names different: declaration 'endColumn' definition 'lastColumn'. unanimity-3.3.0/src/Recursor.h:587:87: note: Function 'ExtendBeta' argument 3 names different: declaration 'endColumn' definition 'lastColumn'. unanimity-3.3.0/src/Recursor.h:699:73: style:inconclusive: Function 'FillAlphaBeta' argument 2 names different: declaration 'alpha' definition 'a'. [funcArgNamesDifferent] unanimity-3.3.0/src/Recursor.h:61:58: note: Function 'FillAlphaBeta' argument 2 names different: declaration 'alpha' definition 'a'. unanimity-3.3.0/src/Recursor.h:699:73: note: Function 'FillAlphaBeta' argument 2 names different: declaration 'alpha' definition 'a'. unanimity-3.3.0/src/Recursor.h:699:79: style:inconclusive: Function 'FillAlphaBeta' argument 3 names different: declaration 'beta' definition 'b'. [funcArgNamesDifferent] unanimity-3.3.0/src/Recursor.h:61:68: note: Function 'FillAlphaBeta' argument 3 names different: declaration 'beta' definition 'b'. unanimity-3.3.0/src/Recursor.h:699:79: note: Function 'FillAlphaBeta' argument 3 names different: declaration 'beta' definition 'b'. unanimity-3.3.0/src/align/AlignConfig.cpp:17:81: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:738:24: warning: Uninitialized variable: alphaV [uninitvar] unanimity-3.3.0/src/Recursor.h:724:22: note: Assuming condition is false unanimity-3.3.0/src/Recursor.h:738:24: note: Uninitialized variable: alphaV unanimity-3.3.0/src/Recursor.h:738:33: warning: Uninitialized variable: betaV [uninitvar] unanimity-3.3.0/src/Recursor.h:724:22: note: Assuming condition is false unanimity-3.3.0/src/Recursor.h:738:33: note: Uninitialized variable: betaV unanimity-3.3.0/src/Recursor.h:227:34: style: Variable 'thisMoveScore' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/Recursor.h:347:34: style: Variable 'thisMoveScore' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:61:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:207:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FLT_MAX [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:241:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:265:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bandExtend_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:302:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable matchScores_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:338:63: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable config_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:424:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FLT_MAX [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:457:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable matchScores_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:519:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bandExtend_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:535:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable target [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:544:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable gapBlockBeginH_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:551:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable targetLen [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:559:65: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable query [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:587:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable globalScore_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:686:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cigar_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:763:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable gapOpenPenalty_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/LinearAlignment.cpp:119:24: style: The scope of the variable 'x2' can be reduced. [variableScope] unanimity-3.3.0/src/align/LinearAlignment.cpp:121:24: style: Local variable 'params' shadows outer variable [shadowVariable] unanimity-3.3.0/src/align/LinearAlignment.cpp:48:19: note: Shadowed declaration unanimity-3.3.0/src/align/LinearAlignment.cpp:121:24: note: Shadow variable unanimity-3.3.0/src/align/PairwiseAlignment.cpp:134:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable target_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:136:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable query_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:138:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable refStart_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:140:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable refEnd_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:144:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable transcript_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:170:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable internal [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:209:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable target_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:234:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable refStart_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:252:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable internal [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/PairwiseAlignment.cpp:281:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Consensus.cpp:35:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable name [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Consensus.cpp:45:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NO_CALL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Filters.cpp:40:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Filters.cpp:53:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/IPoaModel.cpp:40:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CLIP_TO_REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/IPoaModel.cpp:138:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Input.cpp:20:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Input.cpp:94:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable referenceFilename [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Input.cpp:106:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable referenceFilename [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:269:13: style: The scope of the variable 'jBegin' can be reduced. [variableScope] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:270:13: style: The scope of the variable 'jEnd' can be reduced. [variableScope] unanimity-3.3.0/src/genomicconsensus/experimental/Output.cpp:18:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable settings_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Output.cpp:38:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_INFO [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Output.cpp:49:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable processedBasesPerRef_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:269:20: style: Variable 'jBegin' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/align/BandedChainAlignment.cpp:270:18: style: Variable 'jEnd' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:67:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable interval [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:137:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/SettingsToolContract.h:20:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAX_NPROC [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:27:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ARROW [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:42:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:54:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:64:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:85:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:143:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:158:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_WARN [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:183:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST_AND_STRAND_BALANCED [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/io/FastaWriter.cpp:33:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/io/FastaWriter.cpp:45:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Workflow.cpp:48:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_INFO [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Workflow.cpp:157:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/io/FastqWriter.cpp:19:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/io/FastqWriter.cpp:33:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:60:9: style: Variable 'pos' is reassigned a value before the old one has been used. [redundantAssignment] unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:39:13: note: pos is assigned unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:60:9: note: pos is overwritten unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:60:9: style: Variable 'pos' is reassigned a value before the old one has been used. [redundantAssignment] unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:48:17: note: pos is assigned unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:60:9: note: pos is overwritten unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:60:9: style: Variable 'pos' is reassigned a value before the old one has been used. [redundantAssignment] unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:54:17: note: pos is assigned unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:60:9: note: pos is overwritten unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:99:16: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/genomicconsensus/experimental/io/GffWriter.cpp:98:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/io/GffWriter.cpp:117:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/io/VcfWriter.cpp:23:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/genomicconsensus/experimental/io/VcfWriter.cpp:38:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ChimeraLabeler.cpp:16:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable seqan [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/arrow.cpp:21:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/gcpp.cpp:14:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable experimental [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/arrow.cpp:18:26: style: Parameter 'argv' can be declared as const array [constParameter] unanimity-3.3.0/src/main/arrow.cpp:64:25: style: Consider using std::copy_if algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/Simulator.h:56:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs_sim.cpp:33:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs_sim.cpp:117:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs_sim.cpp:164:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GENOMIC [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs_sim.cpp:223:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/genomic_sim.cpp:37:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/genomic_sim.cpp:121:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/genomic_sim.cpp:187:73: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REVERSE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/genomic_sim.cpp:268:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/matrix/ScaledMatrix.cpp:38:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs_sim.cpp:46:21: style: The statement 'if (!foundStart) foundStart=true' is logically equivalent to 'foundStart=true'. [duplicateConditionalAssign] unanimity-3.3.0/src/main/ccs_sim.cpp:47:32: note: Assignment 'foundStart=true' unanimity-3.3.0/src/main/ccs_sim.cpp:46:21: note: Condition '!foundStart' is redundant unanimity-3.3.0/src/main/ccs_sim.cpp:216:26: style: Parameter 'argv' can be declared as const array [constParameter] unanimity-3.3.0/src/main/ccs.cpp:129:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs.cpp:202:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs.cpp:247:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs.cpp:273:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fixed [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/main/ccs.cpp:353:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Simulator.h:57:13: style: Unused variable: pw [unusedVariable] unanimity-3.3.0/src/Simulator.h:57:17: style: Unused variable: ipd [unusedVariable] unanimity-3.3.0/src/matrix/ScaledMatrix.cpp:17:15: warning: Member variable 'ScaledMatrix::dir_' is not initialized in the copy constructor. [uninitMemberVar] unanimity-3.3.0/src/main/genomic_sim.cpp:50:21: style: The statement 'if (!foundStart) foundStart=true' is logically equivalent to 'foundStart=true'. [duplicateConditionalAssign] unanimity-3.3.0/src/main/genomic_sim.cpp:51:32: note: Assignment 'foundStart=true' unanimity-3.3.0/src/main/genomic_sim.cpp:50:21: note: Condition '!foundStart' is redundant unanimity-3.3.0/src/main/genomic_sim.cpp:261:26: style: Parameter 'argv' can be declared as const array [constParameter] unanimity-3.3.0/src/matrix/SparseMatrix.h:82:48: style:inconclusive: Member variable 'SparseMatrix::columns_' uses an uninitialized argument 'nCols_' due to the order of declarations. [initializerList] unanimity-3.3.0/src/matrix/SparseMatrix.cpp:20:7: note: Member variable 'SparseMatrix::columns_' uses an uninitialized argument 'nCols_' due to the order of declarations. unanimity-3.3.0/src/matrix/SparseMatrix.h:82:48: note: Member variable 'SparseMatrix::columns_' uses an uninitialized argument 'nCols_' due to the order of declarations. unanimity-3.3.0/src/main/ccs.cpp:514:56: performance: Searching before insertion is not necessary. Instead of 'movieNames[movieName]=make_shared(movieName)' consider using 'movieNames.try_emplace(movieName, make_shared(movieName));'. [stlFindInsert] unanimity-3.3.0/src/main/ccs.cpp:100:16: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/main/ccs.cpp:151:21: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/models/CounterWeight.h:20:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:51:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ILLEGAL_BASE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:65:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ILLEGAL_PW [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:109:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:121:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:137:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:150:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EmissionContextNumber [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:221:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable detail [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/HelperFunctions.h:269:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable s [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/MarginalModelForm.cpp:142:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/MarginalModelForm.cpp:264:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Marginal [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:202:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kDefaultTplPos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:508:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kDefaultTplPos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:633:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kDefaultTplPos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:711:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REBANDING_THRESHOLD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/P6C4NoCov_Model.cpp:189:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/P6C4NoCov_Model.cpp:288:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable P6C4NoCov [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:346:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable emissions_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/Recursor.h:448:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable emissions_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/ModelFactory.h:72:72: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable COMPILED [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:109:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:299:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PwSnrA [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/PwSnrModelForm.cpp:109:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/PwSnrModelForm.cpp:300:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PwSnr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/MarginalModelForm.cpp:202:64: style:inconclusive: Technically the member function 'PacBio::Consensus::Marginal::::MarginalModelInitializeModel::operator()' can be const. [functionConst] unanimity-3.3.0/src/models/MarginalModelForm.cpp:85:5: style: Class 'MarginalModelCreator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/MarginalModelForm.cpp:200:5: style: Class 'MarginalModelInitializeModel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/MarginalModelForm.cpp:223:5: style: Class 'MarginalModelGenerateReadData' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/Recursor.h:52:5: style: Class 'Recursor < MarginalRecursor >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelFormFactory.h:57:5: style: Class 'ModelFormCreatorImpl < MarginalModelCreator >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/HelperFunctions.h:292:34: style: Local variable 'i' shadows outer variable [shadowVariable] unanimity-3.3.0/src/models/HelperFunctions.h:273:17: note: Shadowed declaration unanimity-3.3.0/src/models/HelperFunctions.h:292:34: note: Shadow variable unanimity-3.3.0/src/models/HelperFunctions.h:302:22: style: Local variable 'i' shadows outer variable [shadowVariable] unanimity-3.3.0/src/models/HelperFunctions.h:273:17: note: Shadowed declaration unanimity-3.3.0/src/models/HelperFunctions.h:302:22: note: Shadow variable unanimity-3.3.0/src/models/MarginalModelForm.cpp:167:16: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:238:64: style:inconclusive: Technically the member function 'PacBio::Consensus::PwSnrA::::PwSnrAInitializeModel::operator()' can be const. [functionConst] unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:89:5: style: Class 'PwSnrAModelCreator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:236:5: style: Class 'PwSnrAInitializeModel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/P6C4NoCov_Model.cpp:38:5: style: Class 'P6C4NoCov_Model' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:259:5: style: Class 'PwSnrAGenerateReadData' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/Recursor.h:52:5: style: Class 'Recursor < PwSnrARecursor >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelFormFactory.h:57:5: style: Class 'ModelFormCreatorImpl < PwSnrAModelCreator >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/P6C4NoCov_Model.cpp:224:16: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/models/PwSnrModelForm.cpp:239:64: style:inconclusive: Technically the member function 'PacBio::Consensus::PwSnr::::PwSnrInitializeModel::operator()' can be const. [functionConst] unanimity-3.3.0/src/models/PwSnrModelForm.cpp:89:5: style: Class 'PwSnrModelCreator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/PwSnrModelForm.cpp:237:5: style: Class 'PwSnrInitializeModel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/PwSnrModelForm.cpp:260:5: style: Class 'PwSnrGenerateReadData' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/Recursor.h:52:5: style: Class 'Recursor < PwSnrRecursor >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelFormFactory.h:57:5: style: Class 'ModelFormCreatorImpl < PwSnrModelCreator >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/Recursor.h:46:1: debug: SymbolDatabase couldn't resolve all user defined types. [debug] unanimity-3.3.0/src/models/S_P1C1Beta_Model.cpp:30:1: debug: SymbolDatabase couldn't resolve all user defined types. [debug] unanimity-3.3.0/src/models/S_P1C1Beta_Model.cpp:159:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P1C1Beta_Model.cpp:247:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P1C1Beta [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P1C1v1_Model.cpp:247:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P1C1v1_Model.cpp:402:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P1C1v1 [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P1C1v2_Model.cpp:245:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P1C1v2_Model.cpp:397:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P1C1v2 [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P2C2v5_Model.cpp:232:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P2C2v5_Model.cpp:384:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P2C2v5 [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P1C1Beta_Model.cpp:35:5: style: Class 'S_P1C1Beta_Model' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/S_P1C1Beta_Model.cpp:183:16: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/models/S_P1C1v1_Model.cpp:35:5: style: Class 'S_P1C1v1_Model' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/S_P1C1v2_Model.cpp:35:5: style: Class 'S_P1C1v2_Model' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/poa/VectorL.h:59:19: debug: Failed to instantiate template "ArgMax". The checking continues anyway. [templateInstantiation] unanimity-3.3.0/src/poa/VectorL.h:58:14: debug: Failed to instantiate template "Max". The checking continues anyway. [templateInstantiation] unanimity-3.3.0/src/poa/PoaConsensus.cpp:39:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/S_P2C2v5_Model.cpp:36:5: style: Class 'S_P2C2v5_Model' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/poa/PoaGraphImpl.h:72:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vertex_index [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphImpl.h:147:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NullVertex [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphImpl.h:155:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NullVertex [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaAlignmentMatrix.cpp:51:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable right [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphImpl.h:67:5: style: Struct 'EdgeComparator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/poa/PoaAlignmentMatrix.h:65:20: style: Variable 'kv' can be declared as reference to const [constVariableReference] unanimity-3.3.0/src/poa/PoaGraph.cpp:66:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraph.cpp:68:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraph.cpp:70:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraph.cpp:72:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphImpl.cpp:434:5: error: There is an unknown macro here somewhere. Configuration is required. If BGL_FORALL_VERTICES is a macro then please configure it. [unknownMacro] unanimity-3.3.0/src/models/SnrModelForm.cpp:160:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/SnrModelForm.cpp:298:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Snr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/variantCaller/VariantCallerSettings.cpp:556:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAX_NPROC [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/variantCaller/VariantCallerSettings.h:80:12: performance:inconclusive: Technically the member function 'PacBio::GenomicConsensus::GenomicConsensusSettings::ThreadCount' can be static (but you may consider moving to unnamed namespace). [functionStatic] unanimity-3.3.0/src/variantCaller/VariantCallerSettings.cpp:420:34: note: Technically the member function 'PacBio::GenomicConsensus::GenomicConsensusSettings::ThreadCount' can be static (but you may consider moving to unnamed namespace). unanimity-3.3.0/src/variantCaller/VariantCallerSettings.h:80:12: note: Technically the member function 'PacBio::GenomicConsensus::GenomicConsensusSettings::ThreadCount' can be static (but you may consider moving to unnamed namespace). unanimity-3.3.0/src/variantCaller/VariantCallerSettings.h:78:5: style: Struct 'GenomicConsensusSettings' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/variantCaller/variantCaller.cpp:36:84: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/RangeFinder.cpp:130:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/variantCaller/variantCaller.cpp:52:32: style: Variable 'inputFile' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/variantCaller/variantCaller.cpp:54:70: style: Variable 'settings' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/variantCaller/variantCaller.cpp:56:34: style: Variable 'outputFiles' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/src/variantCaller/variantCaller.cpp:57:40: style: Variable 'referenceFilename' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/tests/unit/ChimeraTest.cpp:20:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable seqan [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/Mutations.cpp:10:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Consensus [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/RangeFinder.cpp:82:16: style: Consider using std::accumulate algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:24:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Base [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:75:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SpanningReads [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:104:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ReachingScore [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:233:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:348:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Score [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestAlignment.cpp:115:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable internal [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestAlignment.cpp:329:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LEFT [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestAlignment.cpp:564:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestAlignment.cpp:694:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestChemistry.cpp:14:5: style: Same expression on both sides of '=='. [duplicateExpression] unanimity-3.3.0/tests/unit/TestConsensus.cpp:27:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ADAPTER_BEFORE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:127:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:180:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:240:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NO_CALL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:260:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:281:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:360:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:380:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST_AND_STRAND_BALANCED [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:414:91: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:450:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable reads_ [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:486:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FILE_ORDER [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:151:79: style:inconclusive: Function 'threadFirstRead' argument 2 names different: declaration 'readPathOutput' definition 'outputPath'. [funcArgNamesDifferent] unanimity-3.3.0/src/poa/PoaGraphImpl.h:195:69: note: Function 'threadFirstRead' argument 2 names different: declaration 'readPathOutput' definition 'outputPath'. unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:151:79: note: Function 'threadFirstRead' argument 2 names different: declaration 'readPathOutput' definition 'outputPath'. unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:185:49: style:inconclusive: Function 'tracebackAndThread' argument 3 names different: declaration 'mode' definition 'alignMode'. [funcArgNamesDifferent] unanimity-3.3.0/src/poa/PoaGraphImpl.h:199:54: note: Function 'tracebackAndThread' argument 3 names different: declaration 'mode' definition 'alignMode'. unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:185:49: note: Function 'tracebackAndThread' argument 3 names different: declaration 'mode' definition 'alignMode'. unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:185:81: style:inconclusive: Function 'tracebackAndThread' argument 4 names different: declaration 'readPathOutput' definition 'outputPath'. [funcArgNamesDifferent] unanimity-3.3.0/src/poa/PoaGraphImpl.h:200:50: note: Function 'tracebackAndThread' argument 4 names different: declaration 'readPathOutput' definition 'outputPath'. unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:185:81: note: Function 'tracebackAndThread' argument 4 names different: declaration 'readPathOutput' definition 'outputPath'. unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:366:23: style: Local variable 'v' shadows outer variable [shadowVariable] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:341:12: note: Shadowed declaration unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:366:23: note: Shadow variable unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:394:23: style: Local variable 'v' shadows outer variable [shadowVariable] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:341:12: note: Shadowed declaration unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:394:23: note: Shadow variable unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:151:48: performance: Function parameter 'sequence' should be passed by const reference. [passedByValue] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:44:19: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:58:19: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:185:18: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:108:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NO_CALL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:125:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NO_CALL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:139:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:156:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:170:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:187:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:237:72: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ARROW [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:607:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable interval [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:630:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable interval [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1055:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST_AND_STRAND_BALANCED [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1092:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1128:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SPANNING [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1170:88: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FILE_ORDER [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1371:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable name [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestIntegrator.cpp:182:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestIntegrator.cpp:215:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestIntegrator.cpp:317:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestIntegrator.cpp:371:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestIntegrator.cpp:393:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TEMPLATE_TOO_SMALL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestIntegrator.cpp:405:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestInterval.cpp:182:5: style: Local variable 'tree' shadows outer variable [shadowVariable] unanimity-3.3.0/tests/unit/TestInterval.cpp:171:18: note: Shadowed declaration unanimity-3.3.0/tests/unit/TestInterval.cpp:182:5: note: Shadow variable unanimity-3.3.0/tests/unit/TestInterval.cpp:185:5: style: Local variable 'tree' shadows outer variable [shadowVariable] unanimity-3.3.0/tests/unit/TestInterval.cpp:171:18: note: Shadowed declaration unanimity-3.3.0/tests/unit/TestInterval.cpp:185:5: note: Shadow variable unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:238:20: style: Variable 'arrowModel' can be declared as pointer to const [constVariablePointer] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:243:20: style: Variable 'pluralityModel' can be declared as pointer to const [constVariablePointer] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:248:20: style: Variable 'poaModel' can be declared as pointer to const [constVariablePointer] unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:88:15: style: Consider using std::copy algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/tests/unit/TestLoadModels.cpp:83:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestLoadModels.cpp:100:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestLoadModels.cpp:260:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestMutationTracker.cpp:38:81: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestMutationTracker.cpp:95:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestMutationTracker.cpp:113:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestMutationTracker.cpp:131:81: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:43:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable COLOR_NODES [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:66:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:92:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:120:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:209:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:296:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:376:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:386:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:395:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:426:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:436:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:480:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:497:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:510:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:603:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPolish.cpp:35:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPolish.cpp:55:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:91:19: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:119:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:147:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:177:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:208:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:236:30: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:264:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:295:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:321:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:346:23: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:374:81: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:385:59: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:394:30: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:425:48: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:435:19: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:472:66: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:494:17: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:35:71: performance: Function parameter 'description' should be passed by const reference. [passedByValue] unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:45:17: style: Variable 'ret' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:65:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ReverseComplementedRead [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:108:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ReverseComplementedRead [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:119:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:220:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ExtentOnRead [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:257:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ExtentOnRead [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestIntegrator.cpp:231:30: style: Variable 'obs0' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/tests/unit/TestUtility.cpp:13:51: style:inconclusive: Function 'LoadFastaSequences' argument 3 names different: declaration 'sequences' definition 'seqs'. [funcArgNamesDifferent] unanimity-3.3.0/tests/unit/TestUtility.h:9:51: note: Function 'LoadFastaSequences' argument 3 names different: declaration 'sequences' definition 'seqs'. unanimity-3.3.0/tests/unit/TestUtility.cpp:13:51: note: Function 'LoadFastaSequences' argument 3 names different: declaration 'sequences' definition 'seqs'. unanimity-3.3.0/tests/unit/TestUtility.cpp:12:37: performance: Function parameter 'fastaFname' should be passed by const reference. [passedByValue] unanimity-3.3.0/tests/unit/TestUtility.cpp:22:13: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/tests/unit/TestUtility.cpp:25:14: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/tests/unit/TestTemplate.cpp:112:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Base [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestTemplate.cpp:196:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:45:76: warning: Found suspicious operator ',', result is not used. [constStatement] unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:133:25: style: Variable 'consensusSeq' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/tests/unit/TestWhitelist.cpp:29:15: style: Variable 'wls' can be declared as const array [constVariable] unanimity-3.3.0/third-party/cpp-optparse/test.cpp:22:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/test.cpp:25:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/test.cpp:38:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/test.cpp:154:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:147:5: style:inconclusive: Technically the member function 'optparse::Value::operatorconstchar*' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:148:5: style:inconclusive: Technically the member function 'optparse::Value::operatorbool' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:150:5: style:inconclusive: Technically the member function 'optparse::Value::operatorshort' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:152:5: style:inconclusive: Technically the member function 'optparse::Value::operatorshort' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:154:5: style:inconclusive: Technically the member function 'optparse::Value::operatorint' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:156:5: style:inconclusive: Technically the member function 'optparse::Value::operatorint' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:158:5: style:inconclusive: Technically the member function 'optparse::Value::operatorlong' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:160:5: style:inconclusive: Technically the member function 'optparse::Value::operatorlong' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:162:5: style:inconclusive: Technically the member function 'optparse::Value::operatorfloat' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:164:5: style:inconclusive: Technically the member function 'optparse::Value::operatordouble' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:166:5: style:inconclusive: Technically the member function 'optparse::Value::operatordouble' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:145:5: style: Class 'Value' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/third-party/cpp-optparse/test.cpp:16:5: style: Class 'Output' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:345:14: style: The destructor '~OptionGroup' overrides a destructor in a base class but is not marked with a 'override' specifier. [missingOverride] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:208:14: note: Virtual destructor in base class unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:345:14: note: Destructor in derived class unanimity-3.3.0/third-party/cpp-optparse/test.cpp:34:10: style: The function 'operator()' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:464:18: note: Virtual function in base class unanimity-3.3.0/third-party/cpp-optparse/test.cpp:34:10: note: Function in derived class unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:56:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:80:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:118:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:245:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:392:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:411:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:425:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:436:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:438:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:441:80: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:442:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:447:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:534:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cpp-optparse/test.cpp:169:29: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/tests/unit/TestTemplate.cpp:335:15: style: Local variable 'snr' shadows outer variable [shadowVariable] unanimity-3.3.0/tests/unit/TestTemplate.cpp:78:11: note: Shadowed declaration unanimity-3.3.0/tests/unit/TestTemplate.cpp:335:15: note: Shadow variable unanimity-3.3.0/tests/unit/TestTemplate.cpp:336:10: style: Local variable 'mdl' shadows outer variable [shadowVariable] unanimity-3.3.0/tests/unit/TestTemplate.cpp:77:14: note: Shadowed declaration unanimity-3.3.0/tests/unit/TestTemplate.cpp:336:10: note: Shadow variable unanimity-3.3.0/tests/unit/TestTemplate.cpp:324:18: style: Variable 'len' is assigned a value that is never used. [unreadVariable] unanimity-3.3.0/third-party/cssw/ssw_cpp.cpp:217:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable N [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cssw/ssw_cpp.h:212:3: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch] unanimity-3.3.0/third-party/cssw/ssw_cpp.h:213:3: note: Found duplicate branches for 'if' and 'else'. unanimity-3.3.0/third-party/cssw/ssw_cpp.h:212:3: note: Found duplicate branches for 'if' and 'else'. unanimity-3.3.0/third-party/cssw/ssw_cpp.cpp:349:51: style: Redundant pointer operation on 'alignment' - it's already a pointer. [redundantPointerOp] unanimity-3.3.0/third-party/cssw/ssw_cpp.cpp:393:51: style: Redundant pointer operation on 'alignment' - it's already a pointer. [redundantPointerOp] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:304:10: performance:inconclusive: Technically the member function 'optparse::OptionParser::exit' can be static (but you may consider moving to unnamed namespace). [functionStatic] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:444:20: note: Technically the member function 'optparse::OptionParser::exit' can be static (but you may consider moving to unnamed namespace). unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:304:10: note: Technically the member function 'optparse::OptionParser::exit' can be static (but you may consider moving to unnamed namespace). unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:315:17: performance:inconclusive: Technically the member function 'optparse::OptionParser::format_usage' can be static (but you may consider moving to unnamed namespace). [functionStatic] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:422:22: note: Technically the member function 'optparse::OptionParser::format_usage' can be static (but you may consider moving to unnamed namespace). unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:315:17: note: Technically the member function 'optparse::OptionParser::format_usage' can be static (but you may consider moving to unnamed namespace). unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:32:12: style:inconclusive: Technically the member function 'optparse::str_wrap::operator()' can be const. [functionConst] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:31:5: style: Class 'str_wrap' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:131:14: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:197:38: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:211:61: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:231:15: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:233:37: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:260:34: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:278:19: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:282:56: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:396:11: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:425:11: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:448:31: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:472:20: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:477:20: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:483:20: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:484:28: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:489:20: style: C-style pointer casting [cstyleCast] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:153:56: style:inconclusive: Function 'add_option' argument 1 names different: declaration 'opt' definition 'v'. [funcArgNamesDifferent] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:274:56: note: Function 'add_option' argument 1 names different: declaration 'opt' definition 'v'. unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:153:56: note: Function 'add_option' argument 1 names different: declaration 'opt' definition 'v'. unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:270:56: style:inconclusive: Function 'parse_args' argument 1 names different: declaration 'args' definition 'v'. [funcArgNamesDifferent] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:277:56: note: Function 'parse_args' argument 1 names different: declaration 'args' definition 'v'. unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:270:56: note: Function 'parse_args' argument 1 names different: declaration 'args' definition 'v'. unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:335:46: style:inconclusive: Function 'process_opt' argument 1 names different: declaration 'option' definition 'o'. [funcArgNamesDifferent] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:313:36: note: Function 'process_opt' argument 1 names different: declaration 'option' definition 'o'. unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:335:46: note: Function 'process_opt' argument 1 names different: declaration 'option' definition 'o'. unanimity-3.3.0/third-party/cssw/ssw.c:99:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cssw/ssw.c:157:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cssw/ssw.c:336:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cssw/ssw.c:383:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cssw/ssw.c:599:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/third-party/cssw/ssw.c:814:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] unanimity-3.3.0/src/models/SnrModelForm.cpp:236:64: style:inconclusive: Technically the member function 'PacBio::Consensus::Snr::::SnrInitializeModel::operator()' can be const. [functionConst] unanimity-3.3.0/src/models/SnrModelForm.cpp:83:5: style: Class 'SnrModelCreator' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/SnrModelForm.cpp:234:5: style: Class 'SnrInitializeModel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/SnrModelForm.cpp:257:5: style: Class 'SnrGenerateReadData' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/Recursor.h:52:5: style: Class 'Recursor < SnrRecursor >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/ModelFormFactory.h:57:5: style: Class 'ModelFormCreatorImpl < SnrModelCreator >' has a constructor with 1 argument that is not explicit. [noExplicitConstructor] unanimity-3.3.0/src/models/SnrModelForm.cpp:198:16: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm] unanimity-3.3.0/third-party/gmock-1.7.0/gmock/gmock.h:4387:1: error: There is an unknown macro here somewhere. Configuration is required. If GMOCK_INTERNAL_DECL_HAS_1_TEMPLATE_PARAMS is a macro then please configure it. [unknownMacro] unanimity-3.3.0/third-party/cssw/ssw.c:591:4: error: Common realloc mistake: 'h_b' nulled but not freed upon failure [memleakOnRealloc] unanimity-3.3.0/third-party/cssw/ssw.c:592:4: error: Common realloc mistake: 'e_b' nulled but not freed upon failure [memleakOnRealloc] unanimity-3.3.0/third-party/cssw/ssw.c:593:4: error: Common realloc mistake: 'h_c' nulled but not freed upon failure [memleakOnRealloc] unanimity-3.3.0/third-party/cssw/ssw.c:602:4: error: Common realloc mistake: 'direction' nulled but not freed upon failure [memleakOnRealloc] unanimity-3.3.0/third-party/cssw/ssw.c:704:5: error: Common realloc mistake: 'c' nulled but not freed upon failure [memleakOnRealloc] unanimity-3.3.0/third-party/cssw/ssw.c:716:4: error: Common realloc mistake: 'c' nulled but not freed upon failure [memleakOnRealloc] unanimity-3.3.0/third-party/cssw/ssw.c:724:4: error: Common realloc mistake: 'c' nulled but not freed upon failure [memleakOnRealloc] unanimity-3.3.0/third-party/cssw/ssw.c:152:47: style: Variable 'end_read_column' is allocated memory that is never used. [unusedAllocatedMemory] unanimity-3.3.0/third-party/cssw/ssw.c:378:47: style: Variable 'end_read_column' is allocated memory that is never used. [unusedAllocatedMemory] diff: head unanimity-3.3.0/src/ConsensusSettings.cpp:283:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAX_NPROC [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:105:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_DBL_INF [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:117:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_DBL_INF [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:128:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_INT_INF [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:161:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable curState_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:169:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MANUALLY_RELEASED [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:171:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INVALID [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:213:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:23:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable curState_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:32:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:44:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:59:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Strand [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Evaluator.cpp:74:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_DBL_INF [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/EvaluatorImpl.cpp:182:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EXTEND_BUFFER_COLUMNS [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/EvaluatorImpl.cpp:260:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Align [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:116:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:168:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_FLOAT_INF [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:177:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NEG_FLOAT_INF [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:187:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:212:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:226:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:228:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:230:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:248:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TEMPLATE_TOO_SMALL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:254:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:256:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:265:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:27:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ScoreDiff [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:286:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fwdTpl_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:304:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:47:78: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ScoreDiff [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:78:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Integrator.cpp:99:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable evals_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelFactory.cpp:110:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelFactory.cpp:133:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelFactory.cpp:32:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelFactory.cpp:60:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelFactory.cpp:80:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable second [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelFactory.h:72:72: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable COMPILED [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelFormFactory.cpp:57:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable second [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelSelection.cpp:35:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelSelection.cpp:45:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/ModelSelection.cpp:62:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Mutation.cpp:133:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Mutation.cpp:21:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INSERTION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Mutation.cpp:26:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INSERTION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Mutation.cpp:31:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSTITUTION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Mutation.cpp:36:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSTITUTION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Mutation.cpp:47:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Mutation.cpp:75:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/MutationTracker.h:187:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:149:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:174:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ScoreComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:199:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:311:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_INFO [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:395:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:472:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_ERROR [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:510:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_ERROR [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Polish.cpp:72:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ambiguousBaseContainsPureBase [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:202:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kDefaultTplPos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:219:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Idx [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:346:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable emissions_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:354:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:448:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable emissions_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:452:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:508:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kDefaultTplPos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:515:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Idx [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:633:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kDefaultTplPos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:651:77: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:711:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REBANDING_THRESHOLD [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Recursor.h:762:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable scoreDiff_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Simulator.h:56:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/SparsePoa.cpp:120:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/SparsePoa.cpp:55:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/SparsePoa.cpp:84:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/SubreadResultCounter.cpp:40:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AlphaBetaMismatch [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/SubreadResultCounter.cpp:64:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Success [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/SubreadResultCounter.cpp:92:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Other [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/SubreadResultCounter.cpp:98:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Success [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:160:63: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Idx [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:199:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pinStart_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:223:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable end_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:237:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable start_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:294:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable tpl_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:320:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pinStart_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:369:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable end_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:36:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Base [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:377:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutOff_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:382:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutStart_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:42:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:57:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pinEnd_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Template.cpp:76:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Timer.cpp:27:74: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable tick [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/Timer.cpp:47:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable tick [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:207:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FLT_MAX [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:241:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:265:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bandExtend_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:302:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable matchScores_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:338:63: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable config_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:424:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FLT_MAX [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:457:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable matchScores_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:519:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bandExtend_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:535:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable target [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:544:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable gapBlockBeginH_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:551:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable targetLen [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:559:65: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable query [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:587:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable globalScore_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:686:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cigar_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/BandedChainAlignment.cpp:763:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable gapOpenPenalty_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:136:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable query_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:138:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable refStart_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:140:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable refEnd_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:144:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable transcript_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:170:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable internal [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:209:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable target_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:234:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable refStart_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:252:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable internal [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/align/PairwiseAlignment.cpp:281:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Consensus.cpp:45:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NO_CALL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Filters.cpp:53:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/IPoaModel.cpp:138:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Input.cpp:106:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable referenceFilename [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Input.cpp:94:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable referenceFilename [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Intervals.cpp:137:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Output.cpp:38:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_INFO [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Output.cpp:49:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable processedBasesPerRef_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:143:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:158:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_WARN [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:183:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST_AND_STRAND_BALANCED [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:27:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ARROW [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:42:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:54:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:64:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Settings.cpp:85:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/Workflow.cpp:157:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/io/FastaWriter.cpp:45:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/io/FastqWriter.cpp:33:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/io/GffWriter.cpp:117:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/genomicconsensus/experimental/io/VcfWriter.cpp:38:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs.cpp:202:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs.cpp:247:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs.cpp:273:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable fixed [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs.cpp:353:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PBLOG_FATAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs.cpp:514:56: performance: Searching before insertion is not necessary. Instead of 'movieNames[movieName]=make_shared(movieName)' consider using 'movieNames.try_emplace(movieName, make_shared(movieName));'. [stlFindInsert] head unanimity-3.3.0/src/main/ccs_sim.cpp:117:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs_sim.cpp:164:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GENOMIC [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs_sim.cpp:223:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/ccs_sim.cpp:33:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/genomic_sim.cpp:121:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/genomic_sim.cpp:187:73: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REVERSE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/genomic_sim.cpp:268:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/main/genomic_sim.cpp:37:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/matrix/ScaledMatrix.cpp:38:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/matrix/SparseMatrix.h:82:48: style:inconclusive: Member variable 'SparseMatrix::columns_' uses an uninitialized argument 'nCols_' due to the order of declarations. [initializerList] unanimity-3.3.0/src/matrix/SparseMatrix.cpp:20:7: note: Member variable 'SparseMatrix::columns_' uses an uninitialized argument 'nCols_' due to the order of declarations. unanimity-3.3.0/src/matrix/SparseMatrix.h:82:48: note: Member variable 'SparseMatrix::columns_' uses an uninitialized argument 'nCols_' due to the order of declarations. head unanimity-3.3.0/src/models/CounterWeight.h:20:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:109:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:121:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:137:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DELETION [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:150:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EmissionContextNumber [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:221:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable detail [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:269:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable s [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:51:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ILLEGAL_BASE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/HelperFunctions.h:65:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ILLEGAL_PW [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/MarginalModelForm.cpp:142:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/MarginalModelForm.cpp:264:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Marginal [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/P6C4NoCov_Model.cpp:189:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/P6C4NoCov_Model.cpp:288:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable P6C4NoCov [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:109:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/PwSnrAModelForm.cpp:299:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PwSnrA [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/PwSnrModelForm.cpp:109:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/PwSnrModelForm.cpp:300:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PwSnr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P1C1Beta_Model.cpp:159:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P1C1Beta_Model.cpp:247:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P1C1Beta [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P1C1v1_Model.cpp:247:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P1C1v1_Model.cpp:402:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P1C1v1 [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P1C1v2_Model.cpp:245:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P1C1v2_Model.cpp:397:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P1C1v2 [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P2C2v5_Model.cpp:232:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FIRST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/S_P2C2v5_Model.cpp:384:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable S_P2C2v5 [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/SnrModelForm.cpp:160:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MATCH [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/models/SnrModelForm.cpp:298:1: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Snr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaAlignmentMatrix.cpp:51:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable right [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraph.cpp:66:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraph.cpp:68:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraph.cpp:70:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraph.cpp:72:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable impl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraphImpl.h:147:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NullVertex [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraphImpl.h:155:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NullVertex [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:104:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ReachingScore [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:233:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:24:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Base [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:348:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Score [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/PoaGraphTraversals.cpp:75:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SpanningReads [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/src/poa/RangeFinder.cpp:130:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable none [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestAlignment.cpp:329:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LEFT [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestAlignment.cpp:564:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestAlignment.cpp:694:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:180:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:240:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NO_CALL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:260:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:281:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:360:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:380:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST_AND_STRAND_BALANCED [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:414:91: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:450:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable reads_ [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus.cpp:486:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FILE_ORDER [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1055:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST_AND_STRAND_BALANCED [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1092:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LONGEST [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1128:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SPANNING [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1170:88: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FILE_ORDER [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:125:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NO_CALL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:1371:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable name [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:139:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:156:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:170:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:187:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOWERCASE_REFERENCE [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:237:72: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ARROW [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:607:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable interval [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestGenomicConsensus_Experimental.cpp:630:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable interval [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestIntegrator.cpp:215:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestIntegrator.cpp:317:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestIntegrator.cpp:371:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestIntegrator.cpp:393:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TEMPLATE_TOO_SMALL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestIntegrator.cpp:405:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestLoadModels.cpp:100:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestLoadModels.cpp:260:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VALID [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestMutationTracker.cpp:113:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestMutationTracker.cpp:131:81: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestMutationTracker.cpp:95:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SiteComparer [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:120:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:209:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:296:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:35:71: performance: Function parameter 'description' should be passed by const reference. [passedByValue] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:376:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:386:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:395:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:426:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEMIGLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:436:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:480:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:497:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:510:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOCAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:603:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:66:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPoaConsensus.cpp:92:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GLOBAL [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestPolish.cpp:55:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORWARD [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:108:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ReverseComplementedRead [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:119:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DataDir [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:220:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ExtentOnRead [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:257:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ExtentOnRead [valueFlowBailoutIncompleteVar] 2.13.0 unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:61:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Sequence [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestSparsePoa.cpp:65:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ReverseComplementedRead [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/tests/unit/TestTemplate.cpp:196:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:118:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:245:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:392:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:411:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:425:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:436:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:438:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:441:80: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:442:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:447:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:534:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:56:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.cpp:80:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar] 2.13.0 unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:195:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable second [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:345:14: style: The destructor '~OptionGroup' overrides a destructor in a base class but is not marked with a 'override' specifier. [missingOverride] unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:208:14: note: Virtual destructor in base class unanimity-3.3.0/third-party/cpp-optparse/OptionParser.h:345:14: note: Destructor in derived class head unanimity-3.3.0/third-party/cpp-optparse/test.cpp:154:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/test.cpp:22:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/test.cpp:25:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cpp-optparse/test.cpp:38:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cssw/ssw.c:157:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cssw/ssw.c:336:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cssw/ssw.c:383:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cssw/ssw.c:599:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] head unanimity-3.3.0/third-party/cssw/ssw.c:814:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] DONE