2022-06-25 03:10
ftp://ftp.de.debian.org/debian/pool/main/s/samtools/samtools_1.14.orig.tar.gz
cppcheck-options: --library=posix --library=gnu  --showtime=top5 --check-library --inconclusive --enable=style,information --inline-suppr --template=daca2 -D__GNUC__ --platform=unix64 -rp=temp -j4
platform: Linux-5.10.0-15-amd64-x86_64-with-glibc2.31
python: 3.9.2
client-version: 1.3.25
compiler: g++ (Debian 10.2.1-6) 10.2.1 20210110
cppcheck: head 2.8
head-info: 11860cc (2022-06-24 13:55:04 +0200)
count: 163 160
elapsed-time: 8.3 13.5
head-timing-info:
 Overall time: 0s

old-timing-info:
 Overall time: 0s

head results:
samtools-1.14/bam2bcf_indel.c:35:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_SET_INIT_STR is a macro then please configure it. [unknownMacro]
samtools-1.14/amplicon_stats.c:53:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_MAP_INIT_INT64 is a macro then please configure it. [unknownMacro]
samtools-1.14/bam.c:35:40: style:inconclusive: Function 'bam_get_library' argument 1 names different: declaration 'header' definition 'h'. [funcArgNamesDifferent]
samtools-1.14/bam.h:32:40: note: Function 'bam_get_library' argument 1 names different: declaration 'header' definition 'h'.
samtools-1.14/bam.c:35:40: note: Function 'bam_get_library' argument 1 names different: declaration 'header' definition 'h'.
samtools-1.14/bam2depth.c:495:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_MAP_INIT_STR is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_addrprg.c:199:9: warning: Conversion of char literal 'O' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_addrprg.c:199:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_cat.c:501:21: error: Common realloc mistake: 'infns' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/bam_cat.c:530:9: error: Common realloc mistake: 'infns' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/bam_cat.c:467:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_cat.c:467:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_import.c:424:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_import.c:424:9: warning: Conversion of char literal 'O' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_import.c:424:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_import.c:363:14: error: Uninitialized variable: res [uninitvar]
samtools-1.14/bam_import.c:290:23: note: Assuming condition is false
samtools-1.14/bam_import.c:363:14: note: Uninitialized variable: res
samtools-1.14/bam_index.c:125:35: warning: Either the condition '!count0' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
samtools-1.14/bam_index.c:126:9: note: Assuming that condition '!count0' is not redundant
samtools-1.14/bam_index.c:125:35: note: Null pointer addition
samtools-1.14/bam_index.c:183:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_index.c:183:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_lpileup.c:42:1: error: There is an unknown macro here somewhere. Configuration is required. If KSORT_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_markdup.c:192:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_fastq.c:563:33: error: Array 'state->fpi[3]' accessed at index -3, which is out of bounds. [negativeIndex]
samtools-1.14/bam_fastq.c:557:9: note: After for loop, j has value 3
samtools-1.14/bam_fastq.c:560:14: note: Compound assignment '-=', assigned value is 0
samtools-1.14/bam_fastq.c:560:14: note: Compound assignment '-=', assigned value is -3
samtools-1.14/bam_fastq.c:563:15: note: Assuming that condition 'j==i' is not redundant
samtools-1.14/bam_fastq.c:563:33: note: Negative array index
samtools-1.14/bam_fastq.c:373:28: portability: Undefined behaviour, when 'l' is 4 the pointer arithmetic 'fn+l' is out of bounds. [pointerOutOfBoundsCond]
samtools-1.14/bam_fastq.c:373:12: note: Assuming that condition 'l>3' is not redundant
samtools-1.14/bam_fastq.c:373:28: note: Pointer arithmetic overflow
samtools-1.14/bam_fastq.c:374:28: portability: Undefined behaviour, when 'l' is 5 the pointer arithmetic 'fn+l' is out of bounds. [pointerOutOfBoundsCond]
samtools-1.14/bam_fastq.c:374:12: note: Assuming that condition 'l>4' is not redundant
samtools-1.14/bam_fastq.c:374:28: note: Pointer arithmetic overflow
samtools-1.14/bam_fastq.c:375:28: portability: Undefined behaviour, when 'l' is 6 the pointer arithmetic 'fn+l' is out of bounds. [pointerOutOfBoundsCond]
samtools-1.14/bam_fastq.c:375:12: note: Assuming that condition 'l>5' is not redundant
samtools-1.14/bam_fastq.c:375:28: note: Pointer arithmetic overflow
samtools-1.14/bam_fastq.c:201:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_fastq.c:201:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_mate.c:150:15: style: Redundant initialization for 'first'. The initialized value is overwritten before it is read. [redundantInitialization]
samtools-1.14/bam_mate.c:145:19: note: first is initialized
samtools-1.14/bam_mate.c:150:15: note: first is overwritten
samtools-1.14/bam_mate.c:151:16: style: Redundant initialization for 'second'. The initialized value is overwritten before it is read. [redundantInitialization]
samtools-1.14/bam_mate.c:146:20: note: second is initialized
samtools-1.14/bam_mate.c:151:16: note: second is overwritten
samtools-1.14/bam_mate.c:147:49: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
samtools-1.14/bam_mate.c:148:50: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation]
samtools-1.14/bam_mate.c:437:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_mate.c:437:9: warning: Conversion of char literal 'O' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_mate.c:437:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam2bcf.c:679:19: debug: Wrong data detected by condition !tok->next()->astOperand1() [DacaWrongData]
samtools-1.14/bam2bcf.c:437:16: style: Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
samtools-1.14/bam2bcf.c:439:16: style: Expression 'log(1 + x)' can be replaced by 'log1p(x)' to avoid loss of precision. [unpreciseMathCall]
samtools-1.14/bam2bcf.c:207:23: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
samtools-1.14/bam2bcf.c:211:32: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
samtools-1.14/bam2bcf.c:213:32: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
samtools-1.14/bam2bcf.c:215:32: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
samtools-1.14/bam2bcf.c:677:42: style:inconclusive: Function 'bcf_call2bcf' argument 2 names different: declaration 'b' definition 'rec'. [funcArgNamesDifferent]
samtools-1.14/bam2bcf.h:130:46: note: Function 'bcf_call2bcf' argument 2 names different: declaration 'b' definition 'rec'.
samtools-1.14/bam2bcf.c:677:42: note: Function 'bcf_call2bcf' argument 2 names different: declaration 'b' definition 'rec'.
samtools-1.14/bam2bcf.c:613:21: style: Local variable 'tmp' shadows outer variable [shadowVariable]
samtools-1.14/bam2bcf.c:526:21: note: Shadowed declaration
samtools-1.14/bam2bcf.c:613:21: note: Shadow variable
samtools-1.14/bam2bcf.c:267:22: style: Parameter 'pos' can be declared as pointer to const [constParameter]
samtools-1.14/bam2bcf.c:330:29: style: Parameter 'a' can be declared as pointer to const [constParameter]
samtools-1.14/bam2bcf.c:330:37: style: Parameter 'b' can be declared as pointer to const [constParameter]
samtools-1.14/bam2bcf.c:371:31: style: Parameter 'a' can be declared as pointer to const [constParameter]
samtools-1.14/bam2bcf.c:371:39: style: Parameter 'b' can be declared as pointer to const [constParameter]
samtools-1.14/bam2bcf.c:404:27: style: Parameter 'a' can be declared as pointer to const [constParameter]
samtools-1.14/bam2bcf.c:404:35: style: Parameter 'b' can be declared as pointer to const [constParameter]
samtools-1.14/bam2bcf.c:588:32: error: Uninitialized variable: g [uninitvar]
samtools-1.14/bam2bcf.c:576:27: note: Assuming condition is false
samtools-1.14/bam2bcf.c:588:32: note: Uninitialized variable: g
samtools-1.14/bam_ampliconclip.c:891:13: warning: Either the condition '(stats_fp=fopen(param->stats_file,"w"))==NULL' is redundant or there is possible null pointer dereference: stats_fp. [nullPointerRedundantCheck]
samtools-1.14/bam_ampliconclip.c:884:56: note: Assuming that condition '(stats_fp=fopen(param->stats_file,"w"))==NULL' is not redundant
samtools-1.14/bam_ampliconclip.c:891:13: note: Null pointer dereference
samtools-1.14/bam_ampliconclip.c:401:18: style: Local variable 'i' shadows outer variable [shadowVariable]
samtools-1.14/bam_ampliconclip.c:292:14: note: Shadowed declaration
samtools-1.14/bam_ampliconclip.c:401:18: note: Shadow variable
samtools-1.14/bam_ampliconclip.c:959:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_ampliconclip.c:959:9: warning: Conversion of char literal 'O' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_ampliconclip.c:959:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_md.c:250:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_md.c:250:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_rmdup.c:41:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_SET_INIT_STR is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_rmdupse.c:45:1: error: There is an unknown macro here somewhere. Configuration is required. If KLIST_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_samples.c:37:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_MAP_INIT_STR is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_sort.c:95:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_split.c:490:17: style: Local variable 'i' shadows outer variable [shadowVariable]
samtools-1.14/bam_split.c:446:12: note: Shadowed declaration
samtools-1.14/bam_split.c:490:17: note: Shadow variable
samtools-1.14/bam_split.c:110:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_split.c:110:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_tview.h:42:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_MAP_INIT_STR is a macro then please configure it. [unknownMacro]
samtools-1.14/bamshuf.c:84:1: error: There is an unknown macro here somewhere. Configuration is required. If KSORT_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_stat.c:287:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_stat.c:287:9: warning: Conversion of char literal 'O' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_stat.c:287:9: warning: Conversion of char literal '@' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/bam_quickcheck.c:157:17: style: Local variable 'ret' shadows outer variable [shadowVariable]
samtools-1.14/bam_quickcheck.c:119:9: note: Shadowed declaration
samtools-1.14/bam_quickcheck.c:157:17: note: Shadow variable
samtools-1.14/bedcov.c:41:1: error: There is an unknown macro here somewhere. Configuration is required. If KSTREAM_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/bedidx.c:45:1: error: There is an unknown macro here somewhere. Configuration is required. If KSORT_INIT_STATIC is a macro then please configure it. [unknownMacro]
samtools-1.14/cut_target.c:231:17: error: Common realloc mistake: 'cns' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/cut_target.c:71:13: style: Local variable 'q' shadows outer variable [shadowVariable]
samtools-1.14/cut_target.c:62:11: note: Shadowed declaration
samtools-1.14/cut_target.c:71:13: note: Shadow variable
samtools-1.14/cut_target.c:95:71: style: Parameter 'cns' can be declared as pointer to const [constParameter]
samtools-1.14/cut_target.c:182:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/cut_target.c:182:9: warning: Conversion of char literal 'f' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/dict.c:35:1: error: There is an unknown macro here somewhere. Configuration is required. If KSEQ_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/coverage.c:257:21: warning: %i in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
samtools-1.14/coverage.c:258:79: warning: %i in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
samtools-1.14/coverage.c:553:5: warning: Size of pointer 'n_plp' used instead of size of its data. [pointerSize]
samtools-1.14/coverage.c:324:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/misc/ace2sam.c:35:1: error: There is an unknown macro here somewhere. Configuration is required. If KSTREAM_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/misc/maq2sam.c:174:9: warning: %d in format string (no. 2) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
samtools-1.14/misc/md5fa.c:32:1: error: There is an unknown macro here somewhere. Configuration is required. If KSEQ_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/misc/wgsim.c:46:1: error: There is an unknown macro here somewhere. Configuration is required. If KSEQ_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/lz4/lz4.c:567:29: style:inconclusive: Boolean expression 'ip>anchor' is used in bitwise operation. Did you mean '&&'? [bitwiseOnBoolean]
samtools-1.14/lz4/lz4.c:1159:65: style:inconclusive: Boolean expression '(endOnInput?(ip<iend-((1U<<(8-4))-1)):1)!=0' is used in bitwise operation. Did you mean '&&'? [bitwiseOnBoolean]
samtools-1.14/lz4/lz4.c:413:27: style:inconclusive: Function 'LZ4_compressBound' argument 1 names different: declaration 'inputSize' definition 'isize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:165:38: note: Function 'LZ4_compressBound' argument 1 names different: declaration 'inputSize' definition 'isize'.
samtools-1.14/lz4/lz4.c:413:27: note: Function 'LZ4_compressBound' argument 1 names different: declaration 'inputSize' definition 'isize'.
samtools-1.14/lz4/lz4.c:677:96: style:inconclusive: Function 'LZ4_compress_fast_extState' argument 5 names different: declaration 'maxDestSize' definition 'maxOutputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:186:108: note: Function 'LZ4_compress_fast_extState' argument 5 names different: declaration 'maxDestSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:677:96: note: Function 'LZ4_compress_fast_extState' argument 5 names different: declaration 'maxDestSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:697:59: style:inconclusive: Function 'LZ4_compress_fast' argument 3 names different: declaration 'sourceSize' definition 'inputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:175:71: note: Function 'LZ4_compress_fast' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:697:59: note: Function 'LZ4_compress_fast' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:697:74: style:inconclusive: Function 'LZ4_compress_fast' argument 4 names different: declaration 'maxDestSize' definition 'maxOutputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:175:87: note: Function 'LZ4_compress_fast' argument 4 names different: declaration 'maxDestSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:697:74: note: Function 'LZ4_compress_fast' argument 4 names different: declaration 'maxDestSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:715:62: style:inconclusive: Function 'LZ4_compress_default' argument 3 names different: declaration 'sourceSize' definition 'inputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:135:73: note: Function 'LZ4_compress_default' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:715:62: note: Function 'LZ4_compress_default' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:715:77: style:inconclusive: Function 'LZ4_compress_default' argument 4 names different: declaration 'maxDestSize' definition 'maxOutputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:135:89: note: Function 'LZ4_compress_default' argument 4 names different: declaration 'maxDestSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:715:77: note: Function 'LZ4_compress_default' argument 4 names different: declaration 'maxDestSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:910:39: style:inconclusive: Function 'LZ4_compress_destSize' argument 1 names different: declaration 'source' definition 'src'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:200:51: note: Function 'LZ4_compress_destSize' argument 1 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:910:39: note: Function 'LZ4_compress_destSize' argument 1 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:910:50: style:inconclusive: Function 'LZ4_compress_destSize' argument 2 names different: declaration 'dest' definition 'dst'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:200:65: note: Function 'LZ4_compress_destSize' argument 2 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:910:50: note: Function 'LZ4_compress_destSize' argument 2 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:910:60: style:inconclusive: Function 'LZ4_compress_destSize' argument 3 names different: declaration 'sourceSizePtr' definition 'srcSizePtr'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:200:76: note: Function 'LZ4_compress_destSize' argument 3 names different: declaration 'sourceSizePtr' definition 'srcSizePtr'.
samtools-1.14/lz4/lz4.c:910:60: note: Function 'LZ4_compress_destSize' argument 3 names different: declaration 'sourceSizePtr' definition 'srcSizePtr'.
samtools-1.14/lz4/lz4.c:910:76: style:inconclusive: Function 'LZ4_compress_destSize' argument 4 names different: declaration 'targetDestSize' definition 'targetDstSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:200:95: note: Function 'LZ4_compress_destSize' argument 4 names different: declaration 'targetDestSize' definition 'targetDstSize'.
samtools-1.14/lz4/lz4.c:910:76: note: Function 'LZ4_compress_destSize' argument 4 names different: declaration 'targetDestSize' definition 'targetDstSize'.
samtools-1.14/lz4/lz4.c:941:37: style:inconclusive: Function 'LZ4_resetStream' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:247:48: note: Function 'LZ4_resetStream' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:941:37: note: Function 'LZ4_resetStream' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:946:35: style:inconclusive: Function 'LZ4_freeStream' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:241:56: note: Function 'LZ4_freeStream' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:946:35: note: Function 'LZ4_freeStream' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:955:33: style:inconclusive: Function 'LZ4_loadDict' argument 1 names different: declaration 'streamPtr' definition 'LZ4_dict'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:255:44: note: Function 'LZ4_loadDict' argument 1 names different: declaration 'streamPtr' definition 'LZ4_dict'.
samtools-1.14/lz4/lz4.c:955:33: note: Function 'LZ4_loadDict' argument 1 names different: declaration 'streamPtr' definition 'LZ4_dict'.
samtools-1.14/lz4/lz4.c:1006:47: style:inconclusive: Function 'LZ4_compress_fast_continue' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:265:58: note: Function 'LZ4_compress_fast_continue' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:1006:47: note: Function 'LZ4_compress_fast_continue' argument 1 names different: declaration 'streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:1006:71: style:inconclusive: Function 'LZ4_compress_fast_continue' argument 2 names different: declaration 'src' definition 'source'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:265:81: note: Function 'LZ4_compress_fast_continue' argument 2 names different: declaration 'src' definition 'source'.
samtools-1.14/lz4/lz4.c:1006:71: note: Function 'LZ4_compress_fast_continue' argument 2 names different: declaration 'src' definition 'source'.
samtools-1.14/lz4/lz4.c:1006:85: style:inconclusive: Function 'LZ4_compress_fast_continue' argument 3 names different: declaration 'dst' definition 'dest'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:265:92: note: Function 'LZ4_compress_fast_continue' argument 3 names different: declaration 'dst' definition 'dest'.
samtools-1.14/lz4/lz4.c:1006:85: note: Function 'LZ4_compress_fast_continue' argument 3 names different: declaration 'dst' definition 'dest'.
samtools-1.14/lz4/lz4.c:1006:95: style:inconclusive: Function 'LZ4_compress_fast_continue' argument 4 names different: declaration 'srcSize' definition 'inputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:265:101: note: Function 'LZ4_compress_fast_continue' argument 4 names different: declaration 'srcSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:1006:95: note: Function 'LZ4_compress_fast_continue' argument 4 names different: declaration 'srcSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:1006:110: style:inconclusive: Function 'LZ4_compress_fast_continue' argument 5 names different: declaration 'dstCapacity' definition 'maxOutputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:265:114: note: Function 'LZ4_compress_fast_continue' argument 5 names different: declaration 'dstCapacity' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1006:110: note: Function 'LZ4_compress_fast_continue' argument 5 names different: declaration 'dstCapacity' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1081:33: style:inconclusive: Function 'LZ4_saveDict' argument 1 names different: declaration 'streamPtr' definition 'LZ4_dict'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:273:44: note: Function 'LZ4_saveDict' argument 1 names different: declaration 'streamPtr' definition 'LZ4_dict'.
samtools-1.14/lz4/lz4.c:1081:33: note: Function 'LZ4_saveDict' argument 1 names different: declaration 'streamPtr' definition 'LZ4_dict'.
samtools-1.14/lz4/lz4.c:1325:129: style:inconclusive: Function 'LZ4_decompress_safe_continue' argument 5 names different: declaration 'maxDecompressedSize' definition 'maxOutputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:310:140: note: Function 'LZ4_decompress_safe_continue' argument 5 names different: declaration 'maxDecompressedSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1325:129: note: Function 'LZ4_decompress_safe_continue' argument 5 names different: declaration 'maxDecompressedSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1397:91: style:inconclusive: Function 'LZ4_decompress_safe_usingDict' argument 4 names different: declaration 'maxDecompressedSize' definition 'maxOutputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:319:103: note: Function 'LZ4_decompress_safe_usingDict' argument 4 names different: declaration 'maxDecompressedSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1397:91: note: Function 'LZ4_decompress_safe_usingDict' argument 4 names different: declaration 'maxDecompressedSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1418:68: style:inconclusive: Function 'LZ4_compress_limitedOutput' argument 3 names different: declaration 'sourceSize' definition 'inputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:438:133: note: Function 'LZ4_compress_limitedOutput' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:1418:68: note: Function 'LZ4_compress_limitedOutput' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:1419:54: style:inconclusive: Function 'LZ4_compress' argument 3 names different: declaration 'sourceSize' definition 'inputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:437:133: note: Function 'LZ4_compress' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:1419:54: note: Function 'LZ4_compress' argument 3 names different: declaration 'sourceSize' definition 'inputSize'.
samtools-1.14/lz4/lz4.c:1420:68: style:inconclusive: Function 'LZ4_compress_limitedOutput_withState' argument 2 names different: declaration 'source' definition 'src'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:440:138: note: Function 'LZ4_compress_limitedOutput_withState' argument 2 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:1420:68: note: Function 'LZ4_compress_limitedOutput_withState' argument 2 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:1420:79: style:inconclusive: Function 'LZ4_compress_limitedOutput_withState' argument 3 names different: declaration 'dest' definition 'dst'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:440:152: note: Function 'LZ4_compress_limitedOutput_withState' argument 3 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:1420:79: note: Function 'LZ4_compress_limitedOutput_withState' argument 3 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:1420:88: style:inconclusive: Function 'LZ4_compress_limitedOutput_withState' argument 4 names different: declaration 'inputSize' definition 'srcSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:440:162: note: Function 'LZ4_compress_limitedOutput_withState' argument 4 names different: declaration 'inputSize' definition 'srcSize'.
samtools-1.14/lz4/lz4.c:1420:88: note: Function 'LZ4_compress_limitedOutput_withState' argument 4 names different: declaration 'inputSize' definition 'srcSize'.
samtools-1.14/lz4/lz4.c:1420:101: style:inconclusive: Function 'LZ4_compress_limitedOutput_withState' argument 5 names different: declaration 'maxOutputSize' definition 'dstSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:440:177: note: Function 'LZ4_compress_limitedOutput_withState' argument 5 names different: declaration 'maxOutputSize' definition 'dstSize'.
samtools-1.14/lz4/lz4.c:1420:101: note: Function 'LZ4_compress_limitedOutput_withState' argument 5 names different: declaration 'maxOutputSize' definition 'dstSize'.
samtools-1.14/lz4/lz4.c:1421:54: style:inconclusive: Function 'LZ4_compress_withState' argument 2 names different: declaration 'source' definition 'src'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:439:138: note: Function 'LZ4_compress_withState' argument 2 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:1421:54: note: Function 'LZ4_compress_withState' argument 2 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:1421:65: style:inconclusive: Function 'LZ4_compress_withState' argument 3 names different: declaration 'dest' definition 'dst'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:439:152: note: Function 'LZ4_compress_withState' argument 3 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:1421:65: note: Function 'LZ4_compress_withState' argument 3 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:1421:74: style:inconclusive: Function 'LZ4_compress_withState' argument 4 names different: declaration 'inputSize' definition 'srcSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:439:162: note: Function 'LZ4_compress_withState' argument 4 names different: declaration 'inputSize' definition 'srcSize'.
samtools-1.14/lz4/lz4.c:1421:74: note: Function 'LZ4_compress_withState' argument 4 names different: declaration 'inputSize' definition 'srcSize'.
samtools-1.14/lz4/lz4.c:1422:56: style:inconclusive: Function 'LZ4_compress_limitedOutput_continue' argument 1 names different: declaration 'LZ4_streamPtr' definition 'LZ4_stream'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:442:127: note: Function 'LZ4_compress_limitedOutput_continue' argument 1 names different: declaration 'LZ4_streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:1422:56: note: Function 'LZ4_compress_limitedOutput_continue' argument 1 names different: declaration 'LZ4_streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:1422:80: style:inconclusive: Function 'LZ4_compress_limitedOutput_continue' argument 2 names different: declaration 'source' definition 'src'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:442:154: note: Function 'LZ4_compress_limitedOutput_continue' argument 2 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:1422:80: note: Function 'LZ4_compress_limitedOutput_continue' argument 2 names different: declaration 'source' definition 'src'.
samtools-1.14/lz4/lz4.c:1422:91: style:inconclusive: Function 'LZ4_compress_limitedOutput_continue' argument 3 names different: declaration 'dest' definition 'dst'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:442:168: note: Function 'LZ4_compress_limitedOutput_continue' argument 3 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:1422:91: note: Function 'LZ4_compress_limitedOutput_continue' argument 3 names different: declaration 'dest' definition 'dst'.
samtools-1.14/lz4/lz4.c:1422:100: style:inconclusive: Function 'LZ4_compress_limitedOutput_continue' argument 4 names different: declaration 'inputSize' definition 'srcSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:442:178: note: Function 'LZ4_compress_limitedOutput_continue' argument 4 names different: declaration 'inputSize' definition 'srcSize'.
samtools-1.14/lz4/lz4.c:1422:100: note: Function 'LZ4_compress_limitedOutput_continue' argument 4 names different: declaration 'inputSize' definition 'srcSize'.
samtools-1.14/lz4/lz4.c:1422:113: style:inconclusive: Function 'LZ4_compress_limitedOutput_continue' argument 5 names different: declaration 'maxOutputSize' definition 'maxDstSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:442:193: note: Function 'LZ4_compress_limitedOutput_continue' argument 5 names different: declaration 'maxOutputSize' definition 'maxDstSize'.
samtools-1.14/lz4/lz4.c:1422:113: note: Function 'LZ4_compress_limitedOutput_continue' argument 5 names different: declaration 'maxOutputSize' definition 'maxDstSize'.
samtools-1.14/lz4/lz4.c:1423:42: style:inconclusive: Function 'LZ4_compress_continue' argument 1 names different: declaration 'LZ4_streamPtr' definition 'LZ4_stream'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:441:127: note: Function 'LZ4_compress_continue' argument 1 names different: declaration 'LZ4_streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:1423:42: note: Function 'LZ4_compress_continue' argument 1 names different: declaration 'LZ4_streamPtr' definition 'LZ4_stream'.
samtools-1.14/lz4/lz4.c:1459:35: style:inconclusive: Function 'LZ4_slideInputBuffer' argument 1 names different: declaration 'state' definition 'LZ4_Data'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:452:95: note: Function 'LZ4_slideInputBuffer' argument 1 names different: declaration 'state' definition 'LZ4_Data'.
samtools-1.14/lz4/lz4.c:1459:35: note: Function 'LZ4_slideInputBuffer' argument 1 names different: declaration 'state' definition 'LZ4_Data'.
samtools-1.14/lz4/lz4.c:1468:51: style:inconclusive: Function 'LZ4_decompress_safe_withPrefix64k' argument 1 names different: declaration 'src' definition 'source'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:455:125: note: Function 'LZ4_decompress_safe_withPrefix64k' argument 1 names different: declaration 'src' definition 'source'.
samtools-1.14/lz4/lz4.c:1468:51: note: Function 'LZ4_decompress_safe_withPrefix64k' argument 1 names different: declaration 'src' definition 'source'.
samtools-1.14/lz4/lz4.c:1468:65: style:inconclusive: Function 'LZ4_decompress_safe_withPrefix64k' argument 2 names different: declaration 'dst' definition 'dest'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:455:136: note: Function 'LZ4_decompress_safe_withPrefix64k' argument 2 names different: declaration 'dst' definition 'dest'.
samtools-1.14/lz4/lz4.c:1468:65: note: Function 'LZ4_decompress_safe_withPrefix64k' argument 2 names different: declaration 'dst' definition 'dest'.
samtools-1.14/lz4/lz4.c:1468:95: style:inconclusive: Function 'LZ4_decompress_safe_withPrefix64k' argument 4 names different: declaration 'maxDstSize' definition 'maxOutputSize'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:455:165: note: Function 'LZ4_decompress_safe_withPrefix64k' argument 4 names different: declaration 'maxDstSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1468:95: note: Function 'LZ4_decompress_safe_withPrefix64k' argument 4 names different: declaration 'maxDstSize' definition 'maxOutputSize'.
samtools-1.14/lz4/lz4.c:1473:51: style:inconclusive: Function 'LZ4_decompress_fast_withPrefix64k' argument 1 names different: declaration 'src' definition 'source'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:456:125: note: Function 'LZ4_decompress_fast_withPrefix64k' argument 1 names different: declaration 'src' definition 'source'.
samtools-1.14/lz4/lz4.c:1473:51: note: Function 'LZ4_decompress_fast_withPrefix64k' argument 1 names different: declaration 'src' definition 'source'.
samtools-1.14/lz4/lz4.c:1473:65: style:inconclusive: Function 'LZ4_decompress_fast_withPrefix64k' argument 2 names different: declaration 'dst' definition 'dest'. [funcArgNamesDifferent]
samtools-1.14/lz4/lz4.h:456:136: note: Function 'LZ4_decompress_fast_withPrefix64k' argument 2 names different: declaration 'dst' definition 'dest'.
samtools-1.14/lz4/lz4.c:1473:65: note: Function 'LZ4_decompress_fast_withPrefix64k' argument 2 names different: declaration 'dst' definition 'dest'.
samtools-1.14/lz4/lz4.c:171:23: style: union member 'Anonymous0::u' is never used. [unusedStructMember]
samtools-1.14/phase.c:42:1: error: There is an unknown macro here somewhere. Configuration is required. If KSTREAM_INIT is a macro then please configure it. [unknownMacro]
samtools-1.14/sam_utils.c:41:33: style: Parameter 'fp' can be declared as pointer to const [constParameter]
samtools-1.14/sam_view.c:46:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_SET_INIT_STR is a macro then please configure it. [unknownMacro]
samtools-1.14/padding.c:259:13: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:288:17: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:290:17: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:292:21: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:301:24: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:312:21: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/sample.c:32:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_MAP_INIT_STR is a macro then please configure it. [unknownMacro]
samtools-1.14/padding.c:316:13: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:318:17: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:321:21: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:323:17: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/padding.c:456:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/padding.c:456:9: warning: Conversion of char literal 'T' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/padding.c:406:28: style: Variable 'unpadded_len' is assigned a value that is never used. [unreadVariable]
samtools-1.14/stats_isize.h:41:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_MAP_INIT_INT is a macro then please configure it. [unknownMacro]
samtools-1.14/bam_plcmd.c:478:18: debug: Wrong data detected by condition !tok->next()->astOperand1() [DacaWrongData]
samtools-1.14/bam_plcmd.c:479:17: debug: Wrong data detected by condition !tok->next()->astOperand1() [DacaWrongData]
samtools-1.14/bam_plcmd.c:1436:40: warning: fscanf() without field width limits can crash with huge input data. [invalidscanf]
samtools-1.14/bam_plcmd.c:1131:9: error: Common realloc mistake: 'files' nulled but not freed upon failure [memleakOnRealloc]
samtools-1.14/bam_plcmd.c:1380:104: error: Memory leak: mplp.reg [memleak]
samtools-1.14/bam_plcmd.c:1436:30: warning:inconclusive: Either the condition '(fp_rg=fopen(optarg,"r"))==NULL' is redundant or there is possible null pointer dereference: fp_rg. [nullPointerRedundantCheck]
samtools-1.14/bam_plcmd.c:1434:50: note: Assuming that condition '(fp_rg=fopen(optarg,"r"))==NULL' is not redundant
samtools-1.14/bam_plcmd.c:1436:30: note: Null pointer dereference
samtools-1.14/bam_plcmd.c:98:21: style: Local variable 'j' shadows outer variable [shadowVariable]
samtools-1.14/bam_plcmd.c:74:9: note: Shadowed declaration
samtools-1.14/bam_plcmd.c:98:21: note: Shadow variable
samtools-1.14/bam_plcmd.c:858:25: style: Local variable 'n' shadows outer argument [shadowArgument]
samtools-1.14/bam_plcmd.c:476:43: note: Shadowed declaration
samtools-1.14/bam_plcmd.c:858:25: note: Shadow variable
samtools-1.14/bam_plcmd.c:966:43: warning:inconclusive: Found suspicious operator '*', result is not used. [constStatement]
samtools-1.14/bam_plcmd.c:443:52: style: Parameter 'n_plp' can be declared as pointer to const [constParameter]
samtools-1.14/bam_plcmd.c:1276:9: warning: Conversion of char literal '-' to bool always evaluates to true. [incorrectCharBooleanError]
samtools-1.14/test/test.c:43:9: error: Return value of allocation function 'freopen' is not stored. [leakReturnValNotUsed]
samtools-1.14/tmp_file.c:108:9: warning: %d in format string (no. 2) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
samtools-1.14/test/split/test_filter_header_rg.c:227:9: style: The if condition is the same as the previous if condition [duplicateCondition]
samtools-1.14/test/split/test_filter_header_rg.c:225:9: note: First condition
samtools-1.14/test/split/test_filter_header_rg.c:227:9: note: Second condition
samtools-1.14/test/split/test_filter_header_rg.c:270:9: style: The if condition is the same as the previous if condition [duplicateCondition]
samtools-1.14/test/split/test_filter_header_rg.c:268:9: note: First condition
samtools-1.14/test/split/test_filter_header_rg.c:270:9: note: Second condition
diff:
head samtools-1.14/bam2bcf.c:207:23: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
head samtools-1.14/bam2bcf.c:211:32: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
head samtools-1.14/bam2bcf.c:213:32: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
head samtools-1.14/bam2bcf.c:215:32: warning: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
head samtools-1.14/bam2bcf.c:267:22: style: Parameter 'pos' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam2bcf.c:267:22: style: Parameter 'pos' can be declared with const [constParameter]
head samtools-1.14/bam2bcf.c:330:29: style: Parameter 'a' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam2bcf.c:330:29: style: Parameter 'a' can be declared with const [constParameter]
head samtools-1.14/bam2bcf.c:330:37: style: Parameter 'b' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam2bcf.c:330:37: style: Parameter 'b' can be declared with const [constParameter]
head samtools-1.14/bam2bcf.c:371:31: style: Parameter 'a' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam2bcf.c:371:31: style: Parameter 'a' can be declared with const [constParameter]
head samtools-1.14/bam2bcf.c:371:39: style: Parameter 'b' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam2bcf.c:371:39: style: Parameter 'b' can be declared with const [constParameter]
head samtools-1.14/bam2bcf.c:404:27: style: Parameter 'a' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam2bcf.c:404:27: style: Parameter 'a' can be declared with const [constParameter]
head samtools-1.14/bam2bcf.c:404:35: style: Parameter 'b' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam2bcf.c:404:35: style: Parameter 'b' can be declared with const [constParameter]
head samtools-1.14/bam_plcmd.c:443:52: style: Parameter 'n_plp' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/bam_plcmd.c:443:52: style: Parameter 'n_plp' can be declared with const [constParameter]
head samtools-1.14/cut_target.c:95:71: style: Parameter 'cns' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/cut_target.c:95:71: style: Parameter 'cns' can be declared with const [constParameter]
2.8 samtools-1.14/lz4/lz4.c:1133:56: error: Pointer addition with NULL pointer. [nullPointerArithmetic]
     samtools-1.14/lz4/lz4.c:1475:128: note: Calling function 'LZ4_decompress_generic', 10th argument 'NULL' value is 0
     samtools-1.14/lz4/lz4.c:1133:56: note: Null pointer addition
head samtools-1.14/sam_utils.c:41:33: style: Parameter 'fp' can be declared as pointer to const [constParameter]
2.8 samtools-1.14/sam_utils.c:41:33: style: Parameter 'fp' can be declared with const [constParameter]


DONE