2025-09-15 21:24
ftp://ftp.de.debian.org/debian/pool/main/r/raxml/raxml_8.2.13+dfsg.orig.tar.xz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j1
platform: Linux-6.8.0-79-generic-x86_64-with-glibc2.39
python: 3.12.3
client-version: 1.3.69
compiler: g++ (Ubuntu 14.2.0-4ubuntu2~24.04) 14.2.0
cppcheck: head 2.18.0
head-info: 3e169d6 (2025-09-15 13:38:15 +0200)
count: 1087 1087
elapsed-time: 194.0 195.3
head-timing-info:

old-timing-info:

head results:
standard-RAxML-8.2.13/ancestralStates.c:84:42: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:132:34: style: Parameter 'v' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:132:64: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:162:59: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:165:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:165:47: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:170:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:170:11: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:170:20: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:170:25: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:316:67: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:325:6: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:358:44: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:359:27: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:359:49: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:360:27: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:360:41: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:368:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:368:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:511:40: style: Parameter 'extEV' can be declared as const array [constParameter]
standard-RAxML-8.2.13/ancestralStates.c:512:23: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:512:45: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:513:23: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:513:37: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/ancestralStates.c:521:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:521:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/ancestralStates.c:972:3: style: Variable 'ancestral' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/avxLikelihood.c:241:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:570:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:952:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:1092:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:1519:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:1762:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:2478:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:2977:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:3551:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _CMP_LT_OS [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/avxLikelihood.c:1918:8: style: Variable 'vr' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/avxLikelihood.c:1907:11: note: vr is assigned
standard-RAxML-8.2.13/avxLikelihood.c:1918:8: note: vr is overwritten
standard-RAxML-8.2.13/avxLikelihood.c:1923:5: style: Variable 'vr' is assigned an expression that holds the same value. [redundantAssignment]
standard-RAxML-8.2.13/avxLikelihood.c:1907:11: note: vr is assigned 'x2_ptr' here.
standard-RAxML-8.2.13/avxLikelihood.c:1923:5: note: Variable 'vr' is assigned an expression that holds the same value.
standard-RAxML-8.2.13/avxLikelihood.c:2638:10: style: Variable 'scale' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/avxLikelihood.c:2502:10: note: scale is assigned
standard-RAxML-8.2.13/avxLikelihood.c:2638:10: note: scale is overwritten
standard-RAxML-8.2.13/avxLikelihood.c:3137:10: style: Variable 'scale' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/avxLikelihood.c:3001:10: note: scale is assigned
standard-RAxML-8.2.13/avxLikelihood.c:3137:10: note: scale is overwritten
standard-RAxML-8.2.13/avxLikelihood.c:4066:16: style: Local variable 'minlikelihood_avx' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/avxLikelihood.c:3872:15: note: Shadowed declaration
standard-RAxML-8.2.13/avxLikelihood.c:4066:16: note: Shadow variable
standard-RAxML-8.2.13/avxLikelihood.c:67:31: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:67:53: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:68:53: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:350:36: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:350:58: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:351:58: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:352:25: style: Parameter 'x1_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:352:47: style: Parameter 'x2_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:352:69: style: Parameter 'x3_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:861:54: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:862:49: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:1031:55: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:1032:50: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:1333:54: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:1334:48: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:1659:17: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:1661:59: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:1662:53: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:2180:34: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:2180:56: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:2181:43: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:2184:6: style: Variable 'uX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/avxLikelihood.c:2185:6: style: Variable 'uX2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/avxLikelihood.c:2678:31: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:2678:53: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:2679:40: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:2682:6: style: Variable 'uX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/avxLikelihood.c:2683:6: style: Variable 'uX2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/avxLikelihood.c:3175:32: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:3175:54: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:3176:41: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:3177:21: style: Parameter 'x1_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:3177:43: style: Parameter 'x2_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:3177:65: style: Parameter 'x3_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/avxLikelihood.c:3186:6: style: Variable 'uX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/avxLikelihood.c:3187:6: style: Variable 'uX2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:117:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:150:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CLOCKS_PER_SEC [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:613:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SSIZE_MAX [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:644:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:963:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable node [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:1102:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:1276:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:1784:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:3442:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:5640:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable opterr [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:11787:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:12462:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIu64 [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:12812:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:13719:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _MM_FLUSH_ZERO_ON [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/axml.c:11256:24: warning: Assert statement modifies 'bytes_written'. [assignmentInAssert]
standard-RAxML-8.2.13/axml.c:2087:31: error: Array 'finalBinaryStates[6]' accessed at index 6, which is out of bounds. [arrayIndexOutOfBounds]
standard-RAxML-8.2.13/axml.c:2081:2: note: After for loop, i has value 6
standard-RAxML-8.2.13/axml.c:2087:31: note: Array index out of bounds
standard-RAxML-8.2.13/axml.c:5520:12: warning: Either the condition 'i>=128' is redundant or the array 'id[128]' is accessed at index 128, which is out of bounds. [arrayIndexOutOfBoundsCond]
standard-RAxML-8.2.13/axml.c:5514:12: note: Assuming that condition 'i>=128' is not redundant
standard-RAxML-8.2.13/axml.c:5520:12: note: Array index out of bounds
standard-RAxML-8.2.13/axml.c:6697:10: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
standard-RAxML-8.2.13/axml.c:6695:48: note: outer condition: !yFileSet
standard-RAxML-8.2.13/axml.c:6697:10: note: identical inner condition: !yFileSet
standard-RAxML-8.2.13/axml.c:730:16: style: The if condition is the same as the previous if condition [duplicateCondition]
standard-RAxML-8.2.13/axml.c:719:16: note: First condition
standard-RAxML-8.2.13/axml.c:730:16: note: Second condition
standard-RAxML-8.2.13/axml.c:1604:16: style: The if condition is the same as the previous if condition [duplicateCondition]
standard-RAxML-8.2.13/axml.c:1598:16: note: First condition
standard-RAxML-8.2.13/axml.c:1604:16: note: Second condition
standard-RAxML-8.2.13/axml.c:5953:8: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:5974:8: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:6036:10: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:6060:10: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:6084:8: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:6112:10: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:6122:7: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:6220:7: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
standard-RAxML-8.2.13/axml.c:11363:40: warning: If resource allocation fails, then there is a possible null pointer dereference: stream [nullPointerOutOfResources]
standard-RAxML-8.2.13/axml.c:11405:12: note: Assuming allocation function fails
standard-RAxML-8.2.13/axml.c:11405:12: note: Assignment 'f=fopen(binaryModelParamsInputFileName,"r")', assigned value is 0
standard-RAxML-8.2.13/axml.c:11409:52: note: Calling function 'myfread', 4th argument 'f' value is 0
standard-RAxML-8.2.13/axml.c:11363:40: note: Null pointer dereference
standard-RAxML-8.2.13/axml.c:11256:24: style: Redundant initialization for 'bytes_written'. The initialized value is overwritten before it is read. [redundantInitialization]
standard-RAxML-8.2.13/axml.c:11254:19: note: bytes_written is initialized
standard-RAxML-8.2.13/axml.c:11256:24: note: bytes_written is overwritten
standard-RAxML-8.2.13/axml.c:5850:8: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
standard-RAxML-8.2.13/axml.c:14016:4: style: Statements following noreturn function 'subtreeEPA()' will never be executed. [unreachableCode]
standard-RAxML-8.2.13/axml.c:2378:9: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:2355:5: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:2378:9: note: Shadow variable
standard-RAxML-8.2.13/axml.c:2831:9: style: Local variable 'count' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:2672:7: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:2831:9: note: Shadow variable
standard-RAxML-8.2.13/axml.c:3293:7: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:3281:5: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:3293:7: note: Shadow variable
standard-RAxML-8.2.13/axml.c:3294:7: style: Local variable 'w' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:3284:5: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:3294:7: note: Shadow variable
standard-RAxML-8.2.13/axml.c:5951:12: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:5561:5: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:5951:12: note: Shadow variable
standard-RAxML-8.2.13/axml.c:5972:12: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:5561:5: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:5972:12: note: Shadow variable
standard-RAxML-8.2.13/axml.c:6565:6: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:5561:5: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:6565:6: note: Shadow variable
standard-RAxML-8.2.13/axml.c:7982:4: style: Local variable 'treeID' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:7914:62: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:7982:4: note: Shadow variable
standard-RAxML-8.2.13/axml.c:11516:4: style: Local variable 'model' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:11397:5: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:11516:4: note: Shadow variable
standard-RAxML-8.2.13/axml.c:12854:7: style: Local variable 'f' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/axml.c:12785:6: note: Shadowed declaration
standard-RAxML-8.2.13/axml.c:12854:7: note: Shadow variable
standard-RAxML-8.2.13/axml.c:108:59: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:253:46: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:281:31: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:289:33: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:318:22: style: Variable 'yptr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:476:21: style: Parameter 'filename' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:571:44: style: Parameter 'z' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:1041:34: style: Parameter 'buffer' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:1134:5: style: Variable 'genericChars32' can be declared as const array [constVariable]
standard-RAxML-8.2.13/axml.c:1469:5: style: Variable 'genericChars32' can be declared as const array [constVariable]
standard-RAxML-8.2.13/axml.c:2276:6: style: Variable 'category' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:2349:83: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:2540:81: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:2654:46: style: Parameter 'tipJ' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:2654:67: style: Parameter 'tipK' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:2665:62: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:3102:51: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:3346:19: style: Variable 'tip' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:3365:34: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:3371:18: style: Variable 'tip' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:3760:30: style: Parameter 'model' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:4740:47: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:4768:34: style: Parameter 'outgr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:5508:31: style: Parameter 'id' can be declared as const array [constParameter]
standard-RAxML-8.2.13/axml.c:5538:38: style: Parameter 'argv' can be declared as const array [constParameter]
standard-RAxML-8.2.13/axml.c:5650:9: style: Variable 'long_options' can be declared as const array [constVariable]
standard-RAxML-8.2.13/axml.c:5708:6: style: Variable 'ascModels' can be declared as const array [constVariable]
standard-RAxML-8.2.13/axml.c:5758:6: style: Variable 'autoModels' can be declared as const array [constVariable]
standard-RAxML-8.2.13/axml.c:7225:5: style: Variable 'result' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:7881:97: style: Parameter 'fileName' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:8191:30: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:8229:42: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:10354:8: style: Variable 'rc1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:10355:8: style: Variable 'rc2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:10369:8: style: Variable 'rc1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:10370:8: style: Variable 'rc2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:10546:55: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:11127:6: style: Variable 'aPtr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:11128:6: style: Variable 'bPtr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:11140:87: style: Parameter 'fileName' can be declared as const array [constParameter]
standard-RAxML-8.2.13/axml.c:11260:28: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:11389:41: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:11436:3: style: Variable 'modelNames' can be declared as const array [constVariable]
standard-RAxML-8.2.13/axml.c:11649:44: style: Parameter 'array' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:11766:34: style: Parameter 'quartetGroupFileName' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:12730:57: style: Parameter 'bestVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/axml.c:13442:6: style: Variable 'tip' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:13847:10: style: Variable 'info' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:13864:5: style: Variable 'info' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:13938:12: style: Variable 'info' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/axml.c:7257:22: style: Variable 'infoFileExists' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:12983:11: style: Variable 'right' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:13231:28: style: Variable 'checkDistances' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:13847:15: style: Variable 'info' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:13864:10: style: Variable 'info' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:13938:17: style: Variable 'info' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:13847:10: style: Variable 'info' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:13864:5: style: Variable 'info' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:13938:12: style: Variable 'info' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/bipartitionList.c:862:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/bipartitionList.c:1085:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bipNumber [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/bipartitionList.c:1097:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable supportFromTreeset [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/bipartitionList.c:2000:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIu64 [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/bipartitionList.c:4022:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable supportFromTreeset [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/bipartitionList.c:159:18: style: Array index 'i' is used before limits check. [arrayIndexThenCheck]
standard-RAxML-8.2.13/bipartitionList.c:1263:4: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
standard-RAxML-8.2.13/bipartitionList.c:5440:7: style: Same expression used in consecutive assignments of 'sum' and 'relSum'. [duplicateAssignExpression]
standard-RAxML-8.2.13/bipartitionList.c:5441:7: note: Same expression used in consecutive assignments of 'sum' and 'relSum'.
standard-RAxML-8.2.13/bipartitionList.c:5440:7: note: Same expression used in consecutive assignments of 'sum' and 'relSum'.
standard-RAxML-8.2.13/bipartitionList.c:1295:9: style: Redundant initialization for 'n'. The initialized value is overwritten before it is read. [redundantInitialization]
standard-RAxML-8.2.13/bipartitionList.c:1286:7: note: n is initialized
standard-RAxML-8.2.13/bipartitionList.c:1295:9: note: n is overwritten
standard-RAxML-8.2.13/bipartitionList.c:89:54: style: Parameter 'fileName' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:315:36: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:446:38: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:471:36: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:497:41: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:565:46: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:628:40: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:960:41: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1017:47: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1043:43: style: Parameter 'A' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1043:60: style: Parameter 'C' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1361:56: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1361:73: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1419:44: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1419:62: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1445:42: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:1464:129: style: Parameter 'maxima' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2135:22: style: Variable 'vector' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:2160:10: style: Variable 'supportVector' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:2302:47: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2325:50: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2374:35: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2407:66: style: Parameter 'seq' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2407:91: style: Parameter 'translate' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2407:179: style: Parameter 'taxonToReduction' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2420:6: style: Variable 'bipartition' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:2525:74: style: Parameter 'seq' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2525:171: style: Parameter 'taxonToReduction' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2525:194: style: Parameter 'taxonHasDegree' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2544:6: style: Variable 'bipartition' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:2747:47: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:2762:37: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:3264:22: style: Variable 'vector' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:3305:32: style: Parameter 'vect1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:3305:47: style: Parameter 'vect2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:3360:120: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:3410:19: style: Variable 'set' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:3461:191: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:3519:21: style: Variable 'set' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:3985:6: style: Variable 'A' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:3986:6: style: Variable 'C' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:4047:32: style: Parameter 'bipA' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:4047:52: style: Parameter 'bipB' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:4060:134: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:4197:6: style: Variable 'A' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:4198:6: style: Variable 'B' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:4450:5: style: Variable 'bipA' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:4826:62: style: Parameter 'mask' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:4934:45: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:4934:136: style: Parameter 'mask' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5073:7: style: Variable 'toInsert' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:5167:35: style: Parameter 'v' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5178:48: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5196:6: style: Variable 'ca' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:5197:6: style: Variable 'cb' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:5217:6: style: Variable 'ca' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:5218:6: style: Variable 'cb' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:5238:6: style: Variable 'ca' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:5239:6: style: Variable 'cb' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/bipartitionList.c:5281:51: style: Parameter 'A' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5281:67: style: Parameter 'C' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5281:85: style: Parameter 'mask' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5327:55: style: Parameter 'A' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5327:71: style: Parameter 'C' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5327:89: style: Parameter 'mask1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5327:111: style: Parameter 'mask2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5692:42: style: Parameter 'refBip' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5836:46: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/bipartitionList.c:5274:13: style: int result is assigned to long variable. If the variable is long to avoid loss of information, then you have loss of information. [truncLongCastAssignment]
standard-RAxML-8.2.13/bipartitionList.c:4915:10: style: struct member 'referenceMaskArray::entries' is never used. [unusedStructMember]
standard-RAxML-8.2.13/bipartitionList.c:4918:10: style: struct member 'referenceMaskArray::length' is never used. [unusedStructMember]
standard-RAxML-8.2.13/bipartitionList.c:4921:18: style: struct member 'referenceMaskArray::taxonMasks' is never used. [unusedStructMember]
standard-RAxML-8.2.13/bipartitionList.c:4924:18: style: struct member 'referenceMaskArray::bitMasks' is never used. [unusedStructMember]
standard-RAxML-8.2.13/bipartitionList.c:4927:11: style: struct member 'referenceMaskArray::frequencies' is never used. [unusedStructMember]
standard-RAxML-8.2.13/classify.c:543:8: style: Condition '!updateEPA(tr,q,j)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/classify.c:543:19: note: Calling function 'updateEPA' returns 1
standard-RAxML-8.2.13/classify.c:543:8: note: Condition '!updateEPA(tr,q,j)' is always false
standard-RAxML-8.2.13/classify.c:60:43: style: Parameter 'b' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/classify.c:60:54: style: Parameter 'bb' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/classify.c:99:55: style: Parameter 'b' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/classify.c:99:66: style: Parameter 'bb' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/classify.c:137:6: style: Variable 'bInf' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/classify.c:221:3: style: Variable 'nameptr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/classify.c:454:31: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/classify.c:1562:9: style: Variable 'rc1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/classify.c:1563:9: style: Variable 'rc2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/classify.c:1649:6: style: Variable 'inserts' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/classify.c:1665:4: style: Variable 'tipX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/classify.c:1695:49: style: Parameter 'jointFormatTreeFileName' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/classify.c:78:16: style: Variable 'x' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2981:6: style: Same expression used in consecutive assignments of 'states' and 'ascWidth'. [duplicateAssignExpression]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2982:6: note: Same expression used in consecutive assignments of 'states' and 'ascWidth'.
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2981:6: note: Same expression used in consecutive assignments of 'states' and 'ascWidth'.
standard-RAxML-8.2.13/evaluateGenericSpecial.c:105:74: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:105:88: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:138:78: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:138:92: style: Parameter 'EIGN' can be declared as const array [constParameter]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:164:36: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:164:46: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:164:56: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:164:67: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:166:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:171:6: style: Variable 'diagptable' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:172:6: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:173:6: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:269:35: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:269:45: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:272:24: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:272:46: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:273:38: style: Parameter 'weightVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:281:6: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:282:6: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:377:37: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:377:47: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:380:26: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:380:48: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:381:40: style: Parameter 'weightVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:389:6: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:390:6: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:494:38: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:494:48: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:494:58: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:497:20: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:497:42: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:502:6: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:503:6: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:609:42: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:609:52: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:609:62: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:612:24: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:612:46: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:612:151: style: Parameter 'weights' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:617:6: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:618:6: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:744:44: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:744:54: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:744:64: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:744:75: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:746:37: style: Parameter 'tFreqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:747:26: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:747:48: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:755:6: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:756:6: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:886:73: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:886:87: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1225:40: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1225:50: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1225:60: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1225:71: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1227:22: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1230:12: style: Variable 'diagptable' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1230:26: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1230:33: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1310:45: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1310:55: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1310:65: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1310:76: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1312:27: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1315:12: style: Variable 'diagptable' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1315:26: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1315:33: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1363:47: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1363:57: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1363:67: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1363:78: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1365:27: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1368:12: style: Variable 'diagptable' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1368:26: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1368:33: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1416:46: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1416:56: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1416:66: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1416:77: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1418:21: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1421:12: style: Variable 'diagptable' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1421:26: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1421:33: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1469:43: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1469:53: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1469:63: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1469:74: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1471:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1478:12: style: Variable 'diagptable' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1478:25: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1478:30: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1548:44: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1548:54: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1548:64: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1551:26: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1551:54: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1558:12: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1558:17: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1656:50: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1656:60: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1656:70: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1656:81: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1658:37: style: Parameter 'tFreqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1659:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1659:47: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1662:12: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1662:17: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1728:36: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1728:46: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1728:56: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1728:67: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1730:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1737:12: style: Variable 'diagptable' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1737:25: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1737:30: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1993:37: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1993:47: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1993:57: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1996:26: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:1996:54: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2003:12: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2003:17: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2131:43: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2131:53: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2131:63: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2131:74: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2133:37: style: Parameter 'tFreqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2134:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2134:47: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2137:12: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2137:17: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2207:42: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2207:52: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2207:62: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2210:24: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2210:46: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2214:12: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2214:19: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2301:45: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2301:55: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2301:65: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2304:27: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2304:49: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2304:96: style: Parameter 'weights' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2308:12: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2308:19: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2482:47: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2482:57: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2482:67: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2485:22: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2485:44: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2489:12: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2489:19: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2539:49: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2539:59: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2539:69: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2542:24: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2542:46: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2546:12: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2546:19: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2596:49: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2596:59: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2596:69: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2599:24: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2599:46: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2603:12: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2603:19: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2653:47: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2653:57: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2653:67: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2653:78: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2655:33: style: Parameter 'tFreqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2656:22: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2656:44: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2662:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2662:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2725:52: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2725:62: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2725:72: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2725:83: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2727:38: style: Parameter 'tFreqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2728:27: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2728:49: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2734:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2734:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2798:54: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2798:64: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2798:74: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2798:85: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2800:33: style: Parameter 'tFreqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2801:22: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2801:44: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2807:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2807:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2871:54: style: Parameter 'ex1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2871:64: style: Parameter 'ex2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2871:74: style: Parameter 'wptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2871:85: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2873:33: style: Parameter 'tFreqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2874:22: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2874:44: style: Parameter 'diagptable' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2880:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2880:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2948:6: style: Variable 'pz' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2997:7: style: Variable 'x1_gap' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:2998:7: style: Variable 'x2_gap' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:3007:7: style: Variable 'x1_gapColumn' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluateGenericSpecial.c:3008:7: style: Variable 'x2_gapColumn' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:353:7: style: Variable 'lz' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:352:8: note: lz is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:353:7: note: lz is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:877:7: style: Variable 'lz' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:876:8: note: lz is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:877:7: note: lz is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:924:7: style: Variable 'lz' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:923:8: note: lz is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:924:7: note: lz is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:978:7: style: Variable 'lz' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:977:8: note: lz is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:978:7: note: lz is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1029:7: style: Variable 'lz' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1028:8: note: lz is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1029:7: note: lz is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1082:7: style: Variable 'lz' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1081:8: note: lz is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1082:7: note: lz is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1134:7: style: Variable 'lz' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1133:8: note: lz is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1134:7: note: lz is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1440:14: style: Variable 'result' is reassigned a value before the old one has been used. 'break;' missing? [redundantAssignInSwitch]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1432:14: note: $symbol is assigned
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1440:14: note: $symbol is overwritten
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:246:24: style: Parameter 'ti' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:246:36: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:246:50: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:246:62: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:249:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:249:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:330:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:330:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:378:22: style: Parameter 'ti' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:378:34: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:378:48: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:378:60: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:381:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:381:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:457:25: style: Parameter 'ti' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:457:37: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:457:51: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:457:63: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:460:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:460:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:537:24: style: Parameter 'ti' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:537:36: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:537:50: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:537:62: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:540:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:540:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:616:24: style: Parameter 'ti' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:616:36: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:616:50: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:616:62: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:619:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:619:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:695:27: style: Parameter 'ti' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:695:39: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:695:53: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:695:65: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:699:11: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:699:16: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:779:27: style: Parameter 'ti' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:779:39: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:779:53: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:779:65: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:783:11: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:783:16: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:855:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:855:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:903:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:903:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:955:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:955:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1008:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1008:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1059:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1059:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1111:13: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/evaluatePartialGenericSpecial.c:1111:18: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastDNAparsimony.c:2590:11: warning: If resource allocation fails, then there is a possible null pointer dereference: treeFile [nullPointerOutOfResources]
standard-RAxML-8.2.13/fastDNAparsimony.c:2589:19: note: Assuming allocation function fails
standard-RAxML-8.2.13/fastDNAparsimony.c:2589:19: note: Assignment 'treeFile=fopen(labelledTreeFileName,"wb")', assigned value is 0
standard-RAxML-8.2.13/fastDNAparsimony.c:2590:11: note: Null pointer dereference
standard-RAxML-8.2.13/fastDNAparsimony.c:2591:10: warning: If resource allocation fails, then there is a possible null pointer dereference: treeFile [nullPointerOutOfResources]
standard-RAxML-8.2.13/fastDNAparsimony.c:2589:19: note: Assuming allocation function fails
standard-RAxML-8.2.13/fastDNAparsimony.c:2589:19: note: Assignment 'treeFile=fopen(labelledTreeFileName,"wb")', assigned value is 0
standard-RAxML-8.2.13/fastDNAparsimony.c:2591:10: note: Null pointer dereference
standard-RAxML-8.2.13/fastDNAparsimony.c:755:14: style: Local variable 'k' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/fastDNAparsimony.c:639:6: note: Shadowed declaration
standard-RAxML-8.2.13/fastDNAparsimony.c:755:14: note: Shadow variable
standard-RAxML-8.2.13/fastDNAparsimony.c:1793:11: style: Local variable 'j' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/fastDNAparsimony.c:1737:2: note: Shadowed declaration
standard-RAxML-8.2.13/fastDNAparsimony.c:1793:11: note: Shadow variable
standard-RAxML-8.2.13/fastDNAparsimony.c:2534:9: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/fastDNAparsimony.c:2334:5: note: Shadowed declaration
standard-RAxML-8.2.13/fastDNAparsimony.c:2534:9: note: Shadow variable
standard-RAxML-8.2.13/fastDNAparsimony.c:127:32: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/fastDNAparsimony.c:622:6: style: Variable 'ti' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastDNAparsimony.c:1201:55: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/fastDNAparsimony.c:1519:40: style: Parameter 'informative' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/fastDNAparsimony.c:2317:11: style: Variable 'rc1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastDNAparsimony.c:2318:11: style: Variable 'rc2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastDNAparsimony.c:1575:8: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/fastSearch.c:403:20: style: Variable 'rc1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastSearch.c:404:20: style: Variable 'rc2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastSearch.c:418:11: style: Variable 'rc1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastSearch.c:419:11: style: Variable 'rc2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/fastSearch.c:736:33: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/fastSearch.c:755:53: style: Parameter 'col' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/fastSearch.c:755:65: style: Parameter 'loglk' can be declared as const array [constParameter]
standard-RAxML-8.2.13/fastSearch.c:755:83: style: Parameter 'siteloglk' can be declared as const array [constParameter]
standard-RAxML-8.2.13/fastSearch.c:1417:16: style: Variable 'interchanges' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/leaveDropping.c:286:23: style: Array index 'i' is used before limits check. [arrayIndexThenCheck]
standard-RAxML-8.2.13/leaveDropping.c:471:16: style: Return value 'next!=((struct HashElem*)NULL)' is always true [knownConditionTrueFalse]
standard-RAxML-8.2.13/leaveDropping.c:917:5: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
standard-RAxML-8.2.13/leaveDropping.c:917:5: warning: %d in format string (no. 2) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
standard-RAxML-8.2.13/leaveDropping.c:119:44: style: Parameter 'bitVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/leaveDropping.c:496:6: style: Variable 'profileElem' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:513:6: style: Variable 'a' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:514:6: style: Variable 'b' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:542:6: style: Variable 'profileElemAttr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:950:6: style: Variable 'randForTaxa' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:959:54: style: Parameter 'hashTable' can be declared as pointer to const. However it seems that 'dropsetEqualFunctionSparse' is a callback function, if 'hashTable' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
standard-RAxML-8.2.13/leaveDropping.c:992:17: note: You might need to cast the function pointer here
standard-RAxML-8.2.13/leaveDropping.c:959:54: note: Parameter 'hashTable' can be declared as pointer to const
standard-RAxML-8.2.13/leaveDropping.c:966:6: style: Variable 'a' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:967:6: style: Variable 'b' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:982:23: style: Parameter 'droppedTaxa' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/leaveDropping.c:995:6: style: Variable 'elemA' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/leaveDropping.c:1093:94: style: Parameter 'droppedTaxa' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/leaveDropping.c:1093:124: style: Parameter 'profileElemAttr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/leaveDropping.c:1426:80: style: Parameter 'droppedTaxa' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/leaveDropping.c:106:9: style: struct member 'SparseBitVector::elems' is never used. [unusedStructMember]
standard-RAxML-8.2.13/leaveDropping.c:107:16: style: struct member 'SparseBitVector::length' is never used. [unusedStructMember]
standard-RAxML-8.2.13/legacyCode.c:84:0: error: #else without #if [preprocessorErrorDirective]
standard-RAxML-8.2.13/legacyCode.c:84:2: error: #else without #if [preprocessorErrorDirective]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1263:15: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1185:11: note: Assignment 'lh=0.0', assigned value is 0.0
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1212:17: note: Assuming condition is false
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1263:15: note: Invalid argument
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1430:15: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1331:11: note: Assignment 'lh=0.0', assigned value is 0.0
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1368:17: note: Assuming condition is false
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1430:15: note: Invalid argument
standard-RAxML-8.2.13/makenewzGenericSpecial.c:68:21: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:68:43: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:75:11: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:75:16: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:126:21: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:126:43: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:129:11: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:129:16: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:293:74: style: Parameter 'sum' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:295:18: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:295:32: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:295:43: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:295:65: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:441:67: style: Parameter 'sum' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:443:18: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:443:32: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:443:43: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:443:65: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:616:21: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:616:43: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:619:17: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:619:24: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:688:26: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:688:48: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:691:17: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:691:24: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:735:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:735:47: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:738:17: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:738:24: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:782:21: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:782:43: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:785:17: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:785:24: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:828:21: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:828:43: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:831:17: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:831:24: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:960:36: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:960:85: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:960:96: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:961:93: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:964:26: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1026:33: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1026:82: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1026:93: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1028:30: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1034:6: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1096:35: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1096:55: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1096:95: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1100:6: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1174:34: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1181:13: style: Parameter 'weightVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1181:35: style: Parameter 'ascScaler' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1215:3: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1320:36: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1320:56: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1327:15: style: Parameter 'weightVector' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1327:37: style: Parameter 'ascScaler' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1371:3: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1492:40: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1492:60: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1492:100: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1493:93: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1494:34: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1497:6: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1576:41: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1576:90: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1576:101: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1577:91: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1580:26: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1638:43: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1638:92: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1638:103: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1639:93: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1642:26: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1700:43: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1700:92: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1700:103: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1701:93: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1704:26: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1764:64: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1764:85: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1764:105: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1766:15: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1766:26: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1768:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1833:57: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1833:78: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1833:98: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1835:15: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1835:26: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1837:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1919:23: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1919:45: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1921:11: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1921:16: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1989:21: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1989:43: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1990:64: style: Parameter 'x1_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:1990:86: style: Parameter 'x2_gap' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2087:23: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2087:45: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2089:11: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2089:16: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2158:57: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2158:71: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2158:99: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2162:38: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2297:57: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2297:71: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2297:99: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2301:38: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2463:20: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2463:42: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2466:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2466:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2545:24: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2545:46: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2548:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2548:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2737:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2737:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2805:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2805:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2881:20: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2881:42: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2884:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2884:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2939:25: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2939:47: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2942:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2942:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2995:20: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2995:42: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2998:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:2998:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3051:20: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3051:42: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3054:11: style: Variable 'left' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3054:18: style: Variable 'right' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3275:38: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3275:58: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3275:98: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3278:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3331:42: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3331:62: style: Parameter 'EIGN' can be declared as const array [constParameter]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3331:105: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3332:88: style: Parameter 'weights' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3334:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3402:43: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3402:63: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3402:103: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3405:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3458:45: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3458:65: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3458:105: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3461:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3514:45: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3514:65: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3514:105: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3517:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3570:43: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3570:63: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3570:103: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3571:90: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3572:30: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3574:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3642:48: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3642:68: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3642:108: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3643:94: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3644:35: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3646:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3713:50: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3713:70: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3713:110: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3714:89: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3715:30: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3717:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3784:50: style: Parameter 'gammaRates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3784:70: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3784:110: style: Parameter 'wrptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3785:89: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3786:30: style: Parameter 'iptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:3788:12: style: Variable 'sum' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:4169:4: style: Variable 'ex1_asc' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:4170:4: style: Variable 'ex2_asc' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/makenewzGenericSpecial.c:4608:48: style: Parameter 'z0' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:3984:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable 0.453642210148e [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/models.c:4006:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable 0.5e [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/models.c:4068:20: style: Same expression on both sides of '/'. [duplicateExpression]
standard-RAxML-8.2.13/models.c:3651:9: style: Local variable 'l' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/models.c:3519:5: note: Shadowed declaration
standard-RAxML-8.2.13/models.c:3651:9: note: Shadow variable
standard-RAxML-8.2.13/models.c:4237:5: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/models.c:4208:2: note: Shadowed declaration
standard-RAxML-8.2.13/models.c:4237:5: note: Shadow variable
standard-RAxML-8.2.13/models.c:70:74: style: Parameter 'partitionData' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:178:19: style: Variable 'yptr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/models.c:534:60: style: Parameter 'rates' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:534:75: style: Parameter 'freqs' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:552:101: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:3497:12: style: Parameter 'frequencies' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:3506:6: style: Variable 'initialRates' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/models.c:4285:30: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:4285:68: style: Parameter 'f' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:4308:6: style: Variable 's' can be declared as const array [constVariable]
standard-RAxML-8.2.13/models.c:4527:70: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/models.c:351:9: style: Variable 'acc' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/models.c:355:11: style: Variable 'acc' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/models.c:4545:34: style: Variable 'temp' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/multiple.c:266:46: style:inconclusive: Function 'computeNextReplicate' argument 2 names different: declaration 'seed' definition 'randomSeed'. [funcArgNamesDifferent]
standard-RAxML-8.2.13/axml.h:1447:53: note: Function 'computeNextReplicate' argument 2 names different: declaration 'seed' definition 'randomSeed'.
standard-RAxML-8.2.13/multiple.c:266:46: note: Function 'computeNextReplicate' argument 2 names different: declaration 'seed' definition 'randomSeed'.
standard-RAxML-8.2.13/multiple.c:219:4: style: Local variable 'j' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/multiple.c:198:2: note: Shadowed declaration
standard-RAxML-8.2.13/multiple.c:219:4: note: Shadow variable
standard-RAxML-8.2.13/multiple.c:648:14: style: Local variable 'f' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/multiple.c:570:9: note: Shadowed declaration
standard-RAxML-8.2.13/multiple.c:648:14: note: Shadow variable
standard-RAxML-8.2.13/multiple.c:1855:2: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/multiple.c:1455:7: note: Shadowed declaration
standard-RAxML-8.2.13/multiple.c:1855:2: note: Shadow variable
standard-RAxML-8.2.13/multiple.c:1861:3: style: Local variable 'f' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/multiple.c:1470:9: note: Shadowed declaration
standard-RAxML-8.2.13/multiple.c:1861:3: note: Shadow variable
standard-RAxML-8.2.13/multiple.c:72:36: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/multiple.c:241:38: style: Parameter 'originalRateCategories' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/multiple.c:241:67: style: Parameter 'originalInvariant' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/multiple.c:266:63: style: Parameter 'originalRateCategories' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/multiple.c:266:92: style: Parameter 'originalInvariant' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/multiple.c:266:155: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/multiple.c:274:6: style: Variable 'weights' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/multiple.c:328:3: style: Variable 'origSeq' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/multiple.c:1435:39: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/multiple.c:1467:13: style: Variable 'newBest' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7696:9: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7694:9: note: outer condition: !p->x
standard-RAxML-8.2.13/newviewGenericSpecial.c:7696:9: note: identical inner condition: !p->x
standard-RAxML-8.2.13/newviewGenericSpecial.c:76:29: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:81:29: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:86:47: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:86:61: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:86:74: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:185:50: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:185:64: style: Parameter 'EI' can be declared as const array [constParameter]
standard-RAxML-8.2.13/newviewGenericSpecial.c:185:80: style: Parameter 'EIGN' can be declared as const array [constParameter]
standard-RAxML-8.2.13/newviewGenericSpecial.c:229:49: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:230:12: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:232:32: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:232:54: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:233:48: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:236:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:236:11: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:236:20: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:236:25: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:382:53: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:383:34: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:383:56: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:384:24: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:384:38: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:384:50: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:390:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:390:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:533:50: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:539:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:539:11: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:539:20: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:539:25: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:695:52: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:697:29: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:697:43: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:709:6: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:709:11: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:866:49: style: Parameter 'rptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:866:63: style: Parameter 'EI' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:866:76: style: Parameter 'EIGN' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1190:57: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1190:67: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1192:32: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1192:54: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1193:49: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1196:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1197:6: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1198:6: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1198:11: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1688:16: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1689:33: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1689:55: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1690:29: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1690:43: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1690:55: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1694:6: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1694:11: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1866:50: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1866:60: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1868:32: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1868:54: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1869:49: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1872:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1873:6: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1874:6: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:1874:11: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4547:16: style: Parameter 'EV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4548:33: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4548:55: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4549:29: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4549:43: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4549:55: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4562:6: style: Variable 'x1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4563:6: style: Variable 'x2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4575:5: style: Variable 'uX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4577:5: style: Variable 'uX2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:4634:10: style: Variable 'uX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5144:52: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5145:15: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5147:35: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5147:57: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5148:51: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5151:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5151:11: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5151:20: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5151:25: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5449:57: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5450:13: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5452:33: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5452:55: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5453:49: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5456:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5456:11: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5456:20: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5456:25: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5601:59: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5602:13: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5604:33: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5604:55: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5605:49: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5608:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5608:11: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5608:20: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5608:25: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5751:59: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5752:15: style: Parameter 'cptr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5754:35: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5754:57: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5755:51: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5758:6: style: Variable 'le' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5758:11: style: Variable 'ri' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5758:20: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5758:25: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5904:49: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5905:30: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5905:52: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5906:20: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5906:34: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5906:46: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5908:12: style: Variable 'uX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5908:18: style: Variable 'uX2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5911:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:5911:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6287:53: style: Parameter 'extEV' can be declared as const array [constParameter]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6288:34: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6288:56: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6289:24: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6289:38: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6289:50: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6291:12: style: Variable 'uX1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6291:18: style: Variable 'uX2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6294:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:6294:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7233:54: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7234:35: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7234:57: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7235:25: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7235:39: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7235:51: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7240:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7240:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7379:56: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7380:37: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7380:59: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7381:27: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7381:41: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7381:53: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7386:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7386:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7524:56: style: Parameter 'extEV' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7525:37: style: Parameter 'tipX1' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7525:59: style: Parameter 'tipX2' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7526:27: style: Parameter 'left' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7526:41: style: Parameter 'right' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7526:53: style: Parameter 'wgt' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7531:11: style: Variable 'vl' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7531:16: style: Variable 'vr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7880:4: style: Variable 'x1_gapColumn' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7881:4: style: Variable 'x2_gapColumn' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7882:4: style: Variable 'x3_gapColumn' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7892:4: style: Variable 'x1_gap' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:7893:4: style: Variable 'x2_gap' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:8051:5: style: Variable 'ex2_asc' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:8069:5: style: Variable 'ex2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:8095:5: style: Variable 'ex1_asc' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:8096:5: style: Variable 'ex2_asc' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:8116:5: style: Variable 'ex1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/newviewGenericSpecial.c:8117:5: style: Variable 'ex2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/optimizeModel.c:1256:29: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
standard-RAxML-8.2.13/optimizeModel.c:1246:10: note: Assignment 'c=0.0', assigned value is 0.0
standard-RAxML-8.2.13/optimizeModel.c:1252:16: note: Assuming condition is false
standard-RAxML-8.2.13/optimizeModel.c:1256:29: note: Invalid argument
standard-RAxML-8.2.13/optimizeModel.c:1286:60: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
standard-RAxML-8.2.13/optimizeModel.c:1276:10: note: Assignment 'c=0.0', assigned value is 0.0
standard-RAxML-8.2.13/optimizeModel.c:1282:16: note: Assuming condition is false
standard-RAxML-8.2.13/optimizeModel.c:1286:60: note: Invalid argument
standard-RAxML-8.2.13/optimizeModel.c:3633:3: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
standard-RAxML-8.2.13/optimizeModel.c:3635:3: note: Found duplicate branches for 'if' and 'else'.
standard-RAxML-8.2.13/optimizeModel.c:3633:3: note: Found duplicate branches for 'if' and 'else'.
standard-RAxML-8.2.13/optimizeModel.c:1303:120: style:inconclusive: Function 'optParamGeneric' argument 6 names different: declaration 'lim_inf' definition '_lim_inf'. [funcArgNamesDifferent]
standard-RAxML-8.2.13/optimizeModel.c:93:120: note: Function 'optParamGeneric' argument 6 names different: declaration 'lim_inf' definition '_lim_inf'.
standard-RAxML-8.2.13/optimizeModel.c:1303:120: note: Function 'optParamGeneric' argument 6 names different: declaration 'lim_inf' definition '_lim_inf'.
standard-RAxML-8.2.13/optimizeModel.c:1303:137: style:inconclusive: Function 'optParamGeneric' argument 7 names different: declaration 'lim_sup' definition '_lim_sup'. [funcArgNamesDifferent]
standard-RAxML-8.2.13/optimizeModel.c:93:136: note: Function 'optParamGeneric' argument 7 names different: declaration 'lim_sup' definition '_lim_sup'.
standard-RAxML-8.2.13/optimizeModel.c:1303:137: note: Function 'optParamGeneric' argument 7 names different: declaration 'lim_sup' definition '_lim_sup'.
standard-RAxML-8.2.13/optimizeModel.c:173:42: style: Parameter 'linkList' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:173:58: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:458:62: style: Parameter 'value' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:458:94: style: Parameter 'converged' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:650:46: style: Parameter 'bx' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:650:70: style: Parameter 'fb' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:651:75: style: Parameter 'lim_inf' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:651:92: style: Parameter 'lim_sup' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:869:30: style: Parameter 'lim_inf' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:869:47: style: Parameter 'lim_sup' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:1245:6: style: Variable 'w' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/optimizeModel.c:1275:6: style: Variable 'w' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/optimizeModel.c:1783:30: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:1805:38: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:2178:18: style: Variable 'rc1' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/optimizeModel.c:2179:18: style: Variable 'rc2' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/optimizeModel.c:2942:4: style: Variable 'rates' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/optimizeModel.c:2943:4: style: Variable 'f' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/optimizeModel.c:3622:47: style: Parameter 'z' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:3622:56: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:3685:34: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:3727:41: style: Parameter 'lower' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:3727:56: style: Parameter 'upper' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:3745:35: style: Parameter 'xold' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:3745:62: style: Parameter 'g' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:3873:98: style: Parameter 'bound_check' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/optimizeModel.c:2503:9: style: Variable 'accWgt' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/optimizeModel.c:2506:9: style: Variable 'scaler' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/optimizeModel.c:2507:9: style: Variable 'accRat' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/optimizeModel.c:2660:12: style: Variable 'found' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/optimizeModel.c:2821:5: style: Variable 'p' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/parsePartitions.c:614:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/parsePartitions.c:996:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/parsePartitions.c:1405:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/parsePartitions.c:1475:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/parsePartitions.c:63:21: warning: Either the condition 'cc' is redundant or there is possible null pointer dereference: line. [nullPointerRedundantCheck]
standard-RAxML-8.2.13/parsePartitions.c:681:10: note: Assuming that condition 'cc' is not redundant
standard-RAxML-8.2.13/parsePartitions.c:677:38: note: Calling function 'lineContainsOnlyWhiteChars', 1st argument 'cc' value is 0
standard-RAxML-8.2.13/parsePartitions.c:63:21: note: Null pointer dereference
standard-RAxML-8.2.13/parsePartitions.c:61:49: style: Parameter 'line' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/parsePartitions.c:94:6: style: Variable 'start' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/parsePartitions.c:645:41: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/parsePartitions.c:656:46: style: Parameter 'rdta' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/parsePartitions.c:1359:17: style: Variable 'tipI' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/parsePartitions.c:1385:56: style: Parameter 'fileName' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/parsePartitions.c:1469:21: style: Variable 'bracketTypes' can be declared as const array [constVariable]
standard-RAxML-8.2.13/parsePartitions.c:1392:12: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/rapidBootstrap.c:345:11: style: Condition '!qupdate(tr,p)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/rapidBootstrap.c:345:20: note: Calling function 'qupdate' returns 1
standard-RAxML-8.2.13/rapidBootstrap.c:345:11: note: Condition '!qupdate(tr,p)' is always false
standard-RAxML-8.2.13/rapidBootstrap.c:242:8: style: Variable 'impr' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/rapidBootstrap.c:237:8: note: impr is assigned
standard-RAxML-8.2.13/rapidBootstrap.c:242:8: note: impr is overwritten
standard-RAxML-8.2.13/rapidBootstrap.c:79:14: style: Variable 'difference' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/rapidBootstrap.c:158:14: style: Variable 'difference' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/rmqs.c:356:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIu64 [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/rmqs.c:186:23: style:inconclusive: Function 'RMQ_succinct' argument 1 names different: declaration 'a' definition '_a'. [funcArgNamesDifferent]
standard-RAxML-8.2.13/rmq.h:15:23: note: Function 'RMQ_succinct' argument 1 names different: declaration 'a' definition '_a'.
standard-RAxML-8.2.13/rmqs.c:186:23: note: Function 'RMQ_succinct' argument 1 names different: declaration 'a' definition '_a'.
standard-RAxML-8.2.13/rmqs.c:186:33: style:inconclusive: Function 'RMQ_succinct' argument 2 names different: declaration 'n' definition '_n'. [funcArgNamesDifferent]
standard-RAxML-8.2.13/rmq.h:15:32: note: Function 'RMQ_succinct' argument 2 names different: declaration 'n' definition '_n'.
standard-RAxML-8.2.13/rmqs.c:186:33: note: Function 'RMQ_succinct' argument 2 names different: declaration 'n' definition '_n'.
standard-RAxML-8.2.13/rmqs.c:279:6: style: Local variable 'a' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/rmqs.h:13:12: note: Shadowed declaration
standard-RAxML-8.2.13/rmqs.c:279:6: note: Shadow variable
standard-RAxML-8.2.13/rmqs.c:292:6: style: Local variable 'a' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/rmqs.h:13:12: note: Shadowed declaration
standard-RAxML-8.2.13/rmqs.c:292:6: note: Shadow variable
standard-RAxML-8.2.13/rogueEPA.c:227:46: style: Parameter 'adef' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/searchAlgo.c:1047:7: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
standard-RAxML-8.2.13/searchAlgo.c:1045:14: note: outer condition: !x->x
standard-RAxML-8.2.13/searchAlgo.c:1047:7: note: identical inner condition: !x->x
standard-RAxML-8.2.13/searchAlgo.c:1056:7: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
standard-RAxML-8.2.13/searchAlgo.c:1054:14: note: outer condition: !y->x
standard-RAxML-8.2.13/searchAlgo.c:1056:7: note: identical inner condition: !y->x
standard-RAxML-8.2.13/searchAlgo.c:180:7: style: Condition '!update(tr,p)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/searchAlgo.c:180:15: note: Calling function 'update' returns 1
standard-RAxML-8.2.13/searchAlgo.c:180:7: note: Condition '!update(tr,p)' is always false
standard-RAxML-8.2.13/searchAlgo.c:276:8: style: Condition '!update(tr,q)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/searchAlgo.c:276:16: note: Calling function 'update' returns 1
standard-RAxML-8.2.13/searchAlgo.c:276:8: note: Condition '!update(tr,q)' is always false
standard-RAxML-8.2.13/searchAlgo.c:363:7: style: Condition '!update(tr,p)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/searchAlgo.c:363:15: note: Calling function 'update' returns 1
standard-RAxML-8.2.13/searchAlgo.c:363:7: note: Condition '!update(tr,p)' is always false
standard-RAxML-8.2.13/searchAlgo.c:706:11: style: Condition '!insertBIG(tr,p,q,tr->numBranches)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/searchAlgo.c:706:22: note: Calling function 'insertBIG' returns 1
standard-RAxML-8.2.13/searchAlgo.c:706:11: note: Condition '!insertBIG(tr,p,q,tr->numBranches)' is always false
standard-RAxML-8.2.13/searchAlgo.c:841:53: style: Condition 'maxtrav>0' is always true [knownConditionTrueFalse]
standard-RAxML-8.2.13/searchAlgo.c:788:15: note: Assuming that condition 'maxtrav<1' is not redundant
standard-RAxML-8.2.13/searchAlgo.c:841:53: note: Condition 'maxtrav>0' is always true
standard-RAxML-8.2.13/searchAlgo.c:1030:11: style: Condition '!insertBIG(tr,p,q,tr->numBranches)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/searchAlgo.c:1030:22: note: Calling function 'insertBIG' returns 1
standard-RAxML-8.2.13/searchAlgo.c:1030:11: note: Condition '!insertBIG(tr,p,q,tr->numBranches)' is always false
standard-RAxML-8.2.13/searchAlgo.c:1036:11: style: Condition '!insertRestoreBIG(tr,p,q)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/searchAlgo.c:1036:29: note: Calling function 'insertRestoreBIG' returns 1
standard-RAxML-8.2.13/searchAlgo.c:1036:11: note: Condition '!insertRestoreBIG(tr,p,q)' is always false
standard-RAxML-8.2.13/searchAlgo.c:1153:22: style: Variable 'maxtrav' is reassigned a value before the old one has been used. [redundantAssignment]
standard-RAxML-8.2.13/searchAlgo.c:1151:11: note: maxtrav is assigned
standard-RAxML-8.2.13/searchAlgo.c:1153:22: note: maxtrav is overwritten
standard-RAxML-8.2.13/searchAlgo.c:1106:3: style: Variable 'weights' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/searchAlgo.c:1105:4: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/searchAlgo.c:1110:6: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/topologies.c:583:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable scrNum [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/topologies.c:619:22: style: Condition '!restoreTree(bt->byScore[rank],tr)' is always false [knownConditionTrueFalse]
standard-RAxML-8.2.13/topologies.c:619:35: note: Calling function 'restoreTree' returns 1
standard-RAxML-8.2.13/topologies.c:619:22: note: Condition '!restoreTree(bt->byScore[rank],tr)' is always false
standard-RAxML-8.2.13/topologies.c:128:39: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/topologies.c:689:39: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/treeIO.c:710:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:724:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:780:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:887:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:941:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:1005:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:1023:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:1375:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:1597:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:1740:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:2092:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable node [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:2195:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
standard-RAxML-8.2.13/treeIO.c:90:18: style: Array index 'i' is used before limits check. [arrayIndexThenCheck]
standard-RAxML-8.2.13/treeIO.c:491:9: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/treeIO.c:464:7: note: Shadowed declaration
standard-RAxML-8.2.13/treeIO.c:491:9: note: Shadow variable
standard-RAxML-8.2.13/treeIO.c:1222:11: style: Local variable 'i' shadows outer variable [shadowVariable]
standard-RAxML-8.2.13/treeIO.c:1183:15: note: Shadowed declaration
standard-RAxML-8.2.13/treeIO.c:1222:11: note: Shadow variable
standard-RAxML-8.2.13/treeIO.c:241:10: style: Variable 'nameptr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/treeIO.c:399:10: style: Variable 'nameptr' can be declared as pointer to const [constVariablePointer]
standard-RAxML-8.2.13/treeIO.c:669:54: style: Parameter 'fileName' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/treeIO.c:669:70: style: Parameter 'permission' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/treeIO.c:1013:52: style: Parameter 'where' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/treeIO.c:1967:39: style: Parameter 'tr' can be declared as pointer to const [constParameterPointer]
standard-RAxML-8.2.13/treeIO.c:182:7: style: Variable 'z' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/treeIO.c:962:11: style: Variable 'ch' is assigned a value that is never used. [unreadVariable]
standard-RAxML-8.2.13/axml.c:161:12: error: Null pointer dereference: f [ctunullpointer]
standard-RAxML-8.2.13/axml.c:4994:19: note: Calling function printVersionInfo, 2nd argument is null
standard-RAxML-8.2.13/axml.c:4851:2: note: Calling function printBoth, 1st argument is null
standard-RAxML-8.2.13/axml.c:161:12: note: Dereferencing argument f that is null
standard-RAxML-8.2.13/axml.c:11363:40: warning: If resource allocation fails, then there is a possible null pointer dereference: stream [ctunullpointerOutOfResources]
standard-RAxML-8.2.13/axml.c:11405:12: note: Assuming allocation function fails
standard-RAxML-8.2.13/axml.c:11405:12: note: Assignment 'f=fopen(binaryModelParamsInputFileName,"r")', assigned value is 0
standard-RAxML-8.2.13/axml.c:11409:10: note: Calling function myfread, 4th argument is null
standard-RAxML-8.2.13/axml.c:11363:40: note: Dereferencing argument stream that is null
standard-RAxML-8.2.13/parsePartitions.c:63:21: warning: Null pointer dereference: line [ctunullpointer]
standard-RAxML-8.2.13/parsePartitions.c:681:10: note: Assuming that condition 'cc' is not redundant
standard-RAxML-8.2.13/parsePartitions.c:677:37: note: Calling function lineContainsOnlyWhiteChars, 1st argument is null
standard-RAxML-8.2.13/parsePartitions.c:63:21: note: Dereferencing argument line that is null
diff:


DONE