2024-04-12 04:03
ftp://ftp.de.debian.org/debian/pool/main/r/r-cran-seqinr/r-cran-seqinr_4.2-36.orig.tar.gz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning -D__GNUC__ --platform=unix64 -j4
platform: Linux-6.1.0-18-amd64-x86_64-with-glibc2.36
python: 3.11.2
client-version: 1.3.56
compiler: g++ (Debian 12.2.0-14) 12.2.0
cppcheck: head 2.13.0
head-info: 686e28d (2024-04-12 06:02:30 +0200)
count: 51 45
elapsed-time: 16.2 31.4
head-timing-info:

old-timing-info:

head results:
seqinr/src/fastacc.c:8:8: style: Variable 'pbits_in_char' can be declared as pointer to const [constVariablePointer]
seqinr/src/fastacc.c:8:24: style: Variable 'pnoc' can be declared as pointer to const [constVariablePointer]
seqinr/src/fastacc.c:9:18: style: Variable 'ptarget' can be declared as pointer to const [constVariablePointer]
seqinr/src/fastacc.c:9:28: style: Variable 'pdatabase' can be declared as pointer to const [constVariablePointer]
seqinr/src/getzlibsock.c:28:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
seqinr/src/packagename_init.c:41:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
seqinr/src/util.c:19:9: style: Variable 'string' can be declared as pointer to const [constVariablePointer]
seqinr/src/util.c:54:15: style: Variable 'dna' can be declared as const array [constVariable]
seqinr/src/getzlibsock.c:192:7: style: The if condition is the same as the previous if condition [duplicateCondition]
seqinr/src/getzlibsock.c:190:7: note: First condition
seqinr/src/getzlibsock.c:192:7: note: Second condition
seqinr/src/getzlibsock.c:197:6: style: The if condition is the same as the previous if condition [duplicateCondition]
seqinr/src/getzlibsock.c:195:8: note: First condition
seqinr/src/getzlibsock.c:197:6: note: Second condition
seqinr/src/getzlibsock.c:29:13: style: Variable 'ans2' is assigned a value that is never used. [unreadVariable]
seqinr/src/getzlibsock.c:61:10: style: Variable 'nprotect' is assigned a value that is never used. [unreadVariable]
seqinr/src/getzlibsock.c:87:10: style: Variable 'nprotect' is assigned a value that is never used. [unreadVariable]
seqinr/src/getzlibsock.c:119:11: style: Variable 'nprotect' is assigned a value that is never used. [unreadVariable]
seqinr/src/getzlibsock.c:138:10: style: Variable 'nprotect' is assigned a value that is never used. [unreadVariable]
seqinr/src/zsockr.c:53:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Z_NULL [valueFlowBailoutIncompleteVar]
seqinr/src/zsockr.c:103:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
seqinr/src/zsockr.c:129:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
seqinr/src/zsockr.c:52:8: style: Condition 'big==NULL' is always false [knownConditionTrueFalse]
seqinr/src/zsockr.c:145:7: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
seqinr/src/alignment.c:146:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
seqinr/src/alignment.c:452:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
seqinr/src/alignment.c:574:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
seqinr/src/alignment.c:676:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
seqinr/src/alignment.c:779:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
seqinr/src/kaks.c:872:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pos [valueFlowBailoutIncompleteVar]
seqinr/src/alignment.c:55:25: error: Memory leak: seq [memleak]
seqinr/src/alignment.c:57:26: error: Memory leak: seq [memleak]
seqinr/src/alignment.c:57:26: error: Memory leak: seqname [memleak]
seqinr/src/alignment.c:878:3: error: Common realloc mistake: 'seq' nulled but not freed upon failure [memleakOnRealloc]
seqinr/src/alignment.c:879:3: error: Common realloc mistake: 'seqname' nulled but not freed upon failure [memleakOnRealloc]
seqinr/src/alignment.c:880:3: error: Common realloc mistake: 'comments' nulled but not freed upon failure [memleakOnRealloc]
seqinr/src/alignment.c:111:34: warning: Either the condition '(fic=fopen(fic_name,"r"))==NULL' is redundant or there is possible null pointer dereference: fic. [nullPointerRedundantCheck]
seqinr/src/alignment.c:104:35: note: Assuming that condition '(fic=fopen(fic_name,"r"))==NULL' is not redundant
seqinr/src/alignment.c:111:34: note: Null pointer dereference
seqinr/src/alignment.c:461:34: warning: Either the condition 'in==NULL' is redundant or there is possible null pointer dereference: in. [nullPointerRedundantCheck]
seqinr/src/alignment.c:455:7: note: Assuming that condition 'in==NULL' is not redundant
seqinr/src/alignment.c:461:34: note: Null pointer dereference
seqinr/src/alignment.c:582:31: warning: Either the condition 'in==NULL' is redundant or there is possible null pointer dereference: in. [nullPointerRedundantCheck]
seqinr/src/alignment.c:578:8: note: Assuming that condition 'in==NULL' is not redundant
seqinr/src/alignment.c:582:31: note: Null pointer dereference
seqinr/src/alignment.c:685:35: warning: Either the condition '(in=fopen(fname,"r"))==NULL' is redundant or there is possible null pointer dereference: in. [nullPointerRedundantCheck]
seqinr/src/alignment.c:680:31: note: Assuming that condition '(in=fopen(fname,"r"))==NULL' is not redundant
seqinr/src/alignment.c:685:35: note: Null pointer dereference
seqinr/src/alignment.c:83:9: style: Variable 'fic_name' can be declared as pointer to const [constVariablePointer]
seqinr/src/alignment.c:271:7: style: Variable 'mat_pos' can be declared as const array [constVariable]
seqinr/src/alignment.c:443:9: style: Variable 'fname' can be declared as pointer to const [constVariablePointer]
seqinr/src/alignment.c:564:9: style: Variable 'fname' can be declared as pointer to const [constVariablePointer]
seqinr/src/alignment.c:667:9: style: Variable 'fname' can be declared as pointer to const [constVariablePointer]
seqinr/src/alignment.c:670:24: style: Variable 'i' can be declared as pointer to const [constVariablePointer]
seqinr/src/alignment.c:769:9: style: Variable 'fname' can be declared as pointer to const [constVariablePointer]
seqinr/src/kaks.c:393:15: style: Parameter 'cod' can be declared as pointer to const [constParameterPointer]
seqinr/src/kaks.c:623:18: style: Parameter 'cod1' can be declared as pointer to const [constParameterPointer]
seqinr/src/kaks.c:623:30: style: Parameter 'cod2' can be declared as pointer to const [constParameterPointer]
seqinr/src/kaks.c:764:76: style: Parameter 'aa' can be declared as pointer to const [constParameterPointer]
seqinr/src/kaks.c:764:98: style: Parameter 'pos' can be declared as pointer to const [constParameterPointer]
seqinr/src/kaks.c:811:76: style: Parameter 'aa' can be declared as pointer to const [constParameterPointer]
seqinr/src/kaks.c:797:39: warning: Uninitialized variable: n [uninitvar]
seqinr/src/kaks.c:796:30: note: Assuming condition is false
seqinr/src/kaks.c:797:39: note: Uninitialized variable: n
seqinr/src/kaks.c:871:40: style: Unused variable: pos [unusedVariable]
diff:
head seqinr/src/alignment.c:452:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
head seqinr/src/alignment.c:574:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
head seqinr/src/alignment.c:676:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
head seqinr/src/alignment.c:779:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VECSXP [valueFlowBailoutIncompleteVar]
head seqinr/src/zsockr.c:103:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
head seqinr/src/zsockr.c:129:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]


DONE