2025-11-23 17:53
ftp://ftp.de.debian.org/debian/pool/main/r/r-bioc-genomicalignments/r-bioc-genomicalignments_1.42.0.orig.tar.gz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j4
platform: Linux-5.4.0-216-generic-x86_64-with-glibc2.29
python: 3.8.10
client-version: 1.3.69
compiler: g++ (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
cppcheck: head 2.18.0
head-info: cb76e52 (2025-11-22 14:47:37 +0100)
count: 26 26
elapsed-time: 0.5 0.5
head-timing-info:

old-timing-info:

head results:
GenomicAlignments/src/R_init_GenomicAlignments.c:40:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DL_FUNC [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/coordinate_mapping_methods.c:65:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_INTEGER [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/coordinate_mapping_methods.c:90:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTSXP [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/coordinate_mapping_methods.c:136:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/coordinate_mapping_methods.c:220:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_INTEGER [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/coordinate_mapping_methods.c:244:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTSXP [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/coordinate_mapping_methods.c:289:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/encodeOverlaps_methods.c:16:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/encodeOverlaps_methods.c:315:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/encodeOverlaps_methods.c:354:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/encodeOverlaps_methods.c:466:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_INTEGER [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:103:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:271:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:364:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:406:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:441:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:480:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTSXP [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:597:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:702:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:752:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:805:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:915:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:952:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:1006:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:1111:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_STRING [valueFlowBailoutIncompleteVar]
GenomicAlignments/src/cigar_utils.c:483:22: style: Variable 'ans_row' is reassigned a value before the old one has been used. [redundantAssignment]
GenomicAlignments/src/cigar_utils.c:482:10: note: ans_row is assigned
GenomicAlignments/src/cigar_utils.c:483:22: note: ans_row is overwritten
diff:


DONE