2025-11-23 17:53
ftp://ftp.de.debian.org/debian/pool/main/r/r-bioc-dropletutils/r-bioc-dropletutils_1.26.0+ds.orig.tar.xz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j4
platform: Linux-6.12.57+deb13-amd64-x86_64-with-glibc2.41
python: 3.13.5
client-version: 1.3.67
compiler: g++ (Debian 14.2.0-19) 14.2.0
cppcheck: head 2.18.0
head-info: cb76e52 (2025-11-22 14:47:37 +0100)
count: 21 21
elapsed-time: 0.2 0.2
head-timing-info:

old-timing-info:

head results:
DropletUtils/src/RcppExports.cpp:23:1: error: There is an unknown macro here somewhere. Configuration is required. If END_RCPP is a macro then please configure it. [unknownMacro]
DropletUtils/src/get_cell_barcodes.cpp:16:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable H5F_ACC_RDONLY [valueFlowBailoutIncompleteVar]
DropletUtils/src/get_cell_barcodes.cpp:14:50: performance: Function parameter 'fname' should be passed by const reference. [passedByValue]
DropletUtils/src/get_cell_barcodes.cpp:14:69: performance: Function parameter 'dname' should be passed by const reference. [passedByValue]
DropletUtils/src/find_swapped.cpp:143:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
DropletUtils/src/hashed_deltas.cpp:35:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable first [valueFlowBailoutIncompleteVar]
DropletUtils/src/hashed_deltas.cpp:98:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NA_INTEGER [valueFlowBailoutIncompleteVar]
DropletUtils/src/hashed_deltas.cpp:134:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NaReal [valueFlowBailoutIncompleteVar]
DropletUtils/src/hashed_deltas.cpp:183:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NaReal [valueFlowBailoutIncompleteVar]
DropletUtils/src/group_cells.cpp:59:38: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm]
DropletUtils/src/group_cells.cpp:60:40: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm]
DropletUtils/src/find_chimeric.cpp:85:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable R_NilValue [valueFlowBailoutIncompleteVar]
DropletUtils/src/hashed_deltas.cpp:96:10: style:inconclusive: Technically the member function 'hash_ambient_adjuster::fill_best' can be const. [functionConst]
DropletUtils/src/hashed_deltas.cpp:132:15: style: Variable 'corrected' can be declared as reference to const [constVariableReference]
DropletUtils/src/hashed_deltas.cpp:181:15: style: Variable 'corrected' can be declared as reference to const [constVariableReference]
DropletUtils/src/montecarlo_pval.cpp:49:21: style: Consider using std::transform algorithm instead of a raw loop. [useStlAlgorithm]
DropletUtils/src/find_swapped.cpp:149:14: style: Local variable 'ostart' shadows outer variable [shadowVariable]
DropletUtils/src/find_swapped.cpp:110:10: note: Shadowed declaration
DropletUtils/src/find_swapped.cpp:149:14: note: Shadow variable
DropletUtils/src/find_swapped.cpp:149:39: style: Local variable 'oend' shadows outer variable [shadowVariable]
DropletUtils/src/find_swapped.cpp:110:35: note: Shadowed declaration
DropletUtils/src/find_swapped.cpp:149:39: note: Shadow variable
DropletUtils/src/find_swapped.cpp:63:19: style: Consider using std::accumulate algorithm instead of a raw loop. [useStlAlgorithm]
DropletUtils/src/find_chimeric.cpp:92:14: style: Local variable 'ostart' shadows outer variable [shadowVariable]
DropletUtils/src/find_chimeric.cpp:52:10: note: Shadowed declaration
DropletUtils/src/find_chimeric.cpp:92:14: note: Shadow variable
DropletUtils/src/find_chimeric.cpp:92:39: style: Local variable 'oend' shadows outer variable [shadowVariable]
DropletUtils/src/find_chimeric.cpp:52:35: note: Shadowed declaration
DropletUtils/src/find_chimeric.cpp:92:39: note: Shadow variable
diff:


DONE