2026-05-04 10:01 ftp://ftp.de.debian.org/debian/pool/main/p/prodigal/prodigal_2.6.3.orig.tar.gz cppcheck-options: --library=posix --library=gnu --library=bsd --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j1 platform: Linux-6.12.85+deb13-amd64-x86_64-with-glibc2.41 python: 3.13.5 client-version: 1.3.70 compiler: g++ (20250906) 15.2.0 cppcheck: head 2.20.0 head-info: e5c4a73 (2026-05-01 11:10:43 +0200) count: 415 91 elapsed-time: 166.2 163.9 head-timing-info: old-timing-info: head results: Prodigal-2.6.3/bitmap.c:24:35: style:inconclusive: Function 'test' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:24:43: style:inconclusive: Function 'test' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:29:27: style:inconclusive: Function 'clear' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:29:35: style:inconclusive: Function 'clear' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:34:25: style:inconclusive: Function 'set' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:34:33: style:inconclusive: Function 'set' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:39:28: style:inconclusive: Function 'toggle' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:39:36: style:inconclusive: Function 'toggle' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/bitmap.c:25:42: style: Clarify calculation precedence for '&' and '?'. [clarifyCalculation] Prodigal-2.6.3/bitmap.c:24:35: style: Parameter 'bm' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/dprog.c:31:25: style:inconclusive: Function 'dprog' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:31:34: style:inconclusive: Function 'dprog' argument 2 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:31:56: style:inconclusive: Function 'dprog' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:31:66: style:inconclusive: Function 'dprog' argument 4 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:123:37: style:inconclusive: Function 'score_connection' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:123:46: style:inconclusive: Function 'score_connection' argument 2 names different: declaration '' definition 'p1'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:123:54: style:inconclusive: Function 'score_connection' argument 3 names different: declaration '' definition 'p2'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:123:76: style:inconclusive: Function 'score_connection' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:124:27: style:inconclusive: Function 'score_connection' argument 5 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:306:40: style:inconclusive: Function 'eliminate_bad_genes' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:306:49: style:inconclusive: Function 'eliminate_bad_genes' argument 2 names different: declaration '' definition 'dbeg'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/dprog.c:306:73: style:inconclusive: Function 'eliminate_bad_genes' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:54:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/gene.c:25:29: style:inconclusive: Function 'add_genes' argument 1 names different: declaration '' definition 'glist'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:25:50: style:inconclusive: Function 'add_genes' argument 2 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:25:59: style:inconclusive: Function 'add_genes' argument 3 names different: declaration '' definition 'dbeg'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:75:39: style:inconclusive: Function 'tweak_final_starts' argument 1 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:75:50: style:inconclusive: Function 'tweak_final_starts' argument 2 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:75:68: style:inconclusive: Function 'tweak_final_starts' argument 3 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:76:29: style:inconclusive: Function 'tweak_final_starts' argument 4 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:76:51: style:inconclusive: Function 'tweak_final_starts' argument 5 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:196:37: style:inconclusive: Function 'record_gene_data' argument 1 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:196:48: style:inconclusive: Function 'record_gene_data' argument 2 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:196:66: style:inconclusive: Function 'record_gene_data' argument 3 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:197:41: style:inconclusive: Function 'record_gene_data' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:197:51: style:inconclusive: Function 'record_gene_data' argument 5 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:329:24: style:inconclusive: Function 'print_genes' argument 1 names different: declaration '' definition 'fp'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:329:42: style:inconclusive: Function 'print_genes' argument 2 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:329:53: style:inconclusive: Function 'print_genes' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:329:71: style:inconclusive: Function 'print_genes' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:330:22: style:inconclusive: Function 'print_genes' argument 5 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:330:32: style:inconclusive: Function 'print_genes' argument 6 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:330:42: style:inconclusive: Function 'print_genes' argument 7 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:330:52: style:inconclusive: Function 'print_genes' argument 8 names different: declaration '' definition 'is_meta'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:330:67: style:inconclusive: Function 'print_genes' argument 9 names different: declaration '' definition 'mdesc'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:331:36: style:inconclusive: Function 'print_genes' argument 10 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:331:48: style:inconclusive: Function 'print_genes' argument 11 names different: declaration '' definition 'header'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:331:62: style:inconclusive: Function 'print_genes' argument 12 names different: declaration '' definition 'short_hdr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:332:24: style:inconclusive: Function 'print_genes' argument 13 names different: declaration '' definition 'version'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:435:31: style:inconclusive: Function 'write_translations' argument 1 names different: declaration '' definition 'fh'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:435:49: style:inconclusive: Function 'write_translations' argument 2 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:435:60: style:inconclusive: Function 'write_translations' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:436:32: style:inconclusive: Function 'write_translations' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:436:52: style:inconclusive: Function 'write_translations' argument 5 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:436:72: style:inconclusive: Function 'write_translations' argument 6 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:437:40: style:inconclusive: Function 'write_translations' argument 7 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:437:50: style:inconclusive: Function 'write_translations' argument 8 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:437:74: style:inconclusive: Function 'write_translations' argument 9 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:438:29: style:inconclusive: Function 'write_translations' argument 10 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:438:41: style:inconclusive: Function 'write_translations' argument 11 names different: declaration '' definition 'short_hdr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:471:34: style:inconclusive: Function 'write_nucleotide_seqs' argument 1 names different: declaration '' definition 'fh'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:471:52: style:inconclusive: Function 'write_nucleotide_seqs' argument 2 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:471:63: style:inconclusive: Function 'write_nucleotide_seqs' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:472:35: style:inconclusive: Function 'write_nucleotide_seqs' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:472:55: style:inconclusive: Function 'write_nucleotide_seqs' argument 5 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:472:75: style:inconclusive: Function 'write_nucleotide_seqs' argument 6 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:473:43: style:inconclusive: Function 'write_nucleotide_seqs' argument 7 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:473:53: style:inconclusive: Function 'write_nucleotide_seqs' argument 8 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:474:29: style:inconclusive: Function 'write_nucleotide_seqs' argument 9 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:474:39: style:inconclusive: Function 'write_nucleotide_seqs' argument 10 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:474:51: style:inconclusive: Function 'write_nucleotide_seqs' argument 11 names different: declaration '' definition 'short_hdr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:509:36: style:inconclusive: Function 'calculate_confidence' argument 1 names different: declaration '' definition 'score'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:509:50: style:inconclusive: Function 'calculate_confidence' argument 2 names different: declaration '' definition 'start_weight'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/gene.c:202:8: style: Variable 'type_string' can be declared as const array [constVariable] Prodigal-2.6.3/gene.c:329:71: style: Parameter 'nod' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:330:67: style: Parameter 'mdesc' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:331:36: style: Parameter 'tinf' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:331:48: style: Parameter 'header' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:331:62: style: Parameter 'short_hdr' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:332:24: style: Parameter 'version' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:435:49: style: Parameter 'genes' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:436:32: style: Parameter 'nod' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:438:41: style: Parameter 'short_hdr' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:471:52: style: Parameter 'genes' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:472:35: style: Parameter 'nod' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:474:51: style: Parameter 'short_hdr' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/gene.c:287:25: error: Undefined behavior: Variable 'genes[i].gene_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:291:25: error: Undefined behavior: Variable 'genes[i].gene_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:299:25: error: Undefined behavior: Variable 'genes[i].gene_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:304:25: error: Undefined behavior: Variable 'genes[i].gene_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:308:25: error: Undefined behavior: Variable 'genes[i].gene_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:310:28: error: Undefined behavior: Variable 'genes[i].gene_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:312:60: error: Undefined behavior: Variable 'genes[i].gene_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:322:60: error: Undefined behavior: Variable 'genes[i].score_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:343:49: error: Undefined behavior: Variable 'run_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:347:42: error: Undefined behavior: Variable 'run_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/gene.c:349:66: error: Undefined behavior: Variable 'run_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/main.c:66:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/main.c:626:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/main.c:631:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/main.c:643:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/main.c:687:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/main.c:328:14: style: The if condition is the same as the previous if condition [duplicateCondition] Prodigal-2.6.3/main.c:320:14: note: First condition Prodigal-2.6.3/main.c:328:14: note: Second condition Prodigal-2.6.3/main.c:350:14: style: The if condition is the same as the previous if condition [duplicateCondition] Prodigal-2.6.3/main.c:341:14: note: First condition Prodigal-2.6.3/main.c:350:14: note: Second condition Prodigal-2.6.3/main.c:383:14: style: The if condition is the same as the previous if condition [duplicateCondition] Prodigal-2.6.3/main.c:375:14: note: First condition Prodigal-2.6.3/main.c:383:14: note: Second condition Prodigal-2.6.3/main.c:396:14: style: The if condition is the same as the previous if condition [duplicateCondition] Prodigal-2.6.3/main.c:388:14: note: First condition Prodigal-2.6.3/main.c:396:14: note: Second condition Prodigal-2.6.3/main.c:114:35: style: Same expression on both sides of '||'. [duplicateExpression] Prodigal-2.6.3/main.c:135:40: style: Same expression on both sides of '||'. [duplicateExpression] Prodigal-2.6.3/main.c:630:18: style:inconclusive: Function 'usage' argument 1 names different: declaration '' definition 'msg'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/main.c:682:39: style:inconclusive: Function 'copy_standard_input_to_file' argument 1 names different: declaration '' definition 'path'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/main.c:682:49: style:inconclusive: Function 'copy_standard_input_to_file' argument 2 names different: declaration '' definition 'quiet'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/main.c:47:22: style: Variable 'start_file' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/main.c:47:35: style: Variable 'trans_file' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/main.c:47:48: style: Variable 'nuc_file' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/main.c:48:9: style: Variable 'input_file' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/main.c:48:22: style: Variable 'output_file' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/main.c:630:18: style: Parameter 'msg' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/main.c:682:39: style: Parameter 'path' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/main.c:87:28: style: Variable 'max_score' is assigned a value that is never used. [unreadVariable] Prodigal-2.6.3/metagenomic.c:27:59: style:inconclusive: Function 'initialize_metagenomic_bins' argument 1 names different: declaration '' definition 'meta'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:490:63: error: Invalid abs() argument nr 1. A non-boolean value is required. [invalidFunctionArgBool] Prodigal-2.6.3/node.c:518:29: error: Invalid abs() argument nr 1. A non-boolean value is required. [invalidFunctionArgBool] Prodigal-2.6.3/node.c:541:15: style: Floating-point cast causes loss of precision. [suspiciousFloatingPointCast] Prodigal-2.6.3/node.c:557:15: style: Floating-point cast causes loss of precision. [suspiciousFloatingPointCast] Prodigal-2.6.3/node.c:642:16: style: Floating-point cast causes loss of precision. [suspiciousFloatingPointCast] Prodigal-2.6.3/node.c:662:16: style: Floating-point cast causes loss of precision. [suspiciousFloatingPointCast] Prodigal-2.6.3/node.c:28:30: style:inconclusive: Function 'add_nodes' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:28:50: style:inconclusive: Function 'add_nodes' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:28:60: style:inconclusive: Function 'add_nodes' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:29:16: style:inconclusive: Function 'add_nodes' argument 4 names different: declaration '' definition 'nodes'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:29:27: style:inconclusive: Function 'add_nodes' argument 5 names different: declaration '' definition 'closed'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:29:41: style:inconclusive: Function 'add_nodes' argument 6 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:29:52: style:inconclusive: Function 'add_nodes' argument 7 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:30:16: style:inconclusive: Function 'add_nodes' argument 8 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:176:38: style:inconclusive: Function 'reset_node_scores' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:176:47: style:inconclusive: Function 'reset_node_scores' argument 2 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:208:46: style:inconclusive: Function 'record_overlapping_starts' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:208:55: style:inconclusive: Function 'record_overlapping_starts' argument 2 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:209:33: style:inconclusive: Function 'record_overlapping_starts' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:209:43: style:inconclusive: Function 'record_overlapping_starts' argument 4 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:263:26: style:inconclusive: Function 'record_gc_bias' argument 1 names different: declaration '' definition 'gc'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:263:44: style:inconclusive: Function 'record_gc_bias' argument 2 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:263:53: style:inconclusive: Function 'record_gc_bias' argument 3 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:264:22: style:inconclusive: Function 'record_gc_bias' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:325:42: style:inconclusive: Function 'calc_dicodon_gene' argument 1 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:325:63: style:inconclusive: Function 'calc_dicodon_gene' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:326:30: style:inconclusive: Function 'calc_dicodon_gene' argument 3 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:326:40: style:inconclusive: Function 'calc_dicodon_gene' argument 4 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:326:60: style:inconclusive: Function 'calc_dicodon_gene' argument 5 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:326:69: style:inconclusive: Function 'calc_dicodon_gene' argument 6 names different: declaration '' definition 'dbeg'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:375:33: style:inconclusive: Function 'score_nodes' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:375:53: style:inconclusive: Function 'score_nodes' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:375:63: style:inconclusive: Function 'score_nodes' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:376:32: style:inconclusive: Function 'score_nodes' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:376:41: style:inconclusive: Function 'score_nodes' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:376:63: style:inconclusive: Function 'score_nodes' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:377:22: style:inconclusive: Function 'score_nodes' argument 7 names different: declaration '' definition 'closed'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:377:34: style:inconclusive: Function 'score_nodes' argument 8 names different: declaration '' definition 'is_meta'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:524:33: style:inconclusive: Function 'calc_orf_gc' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:524:53: style:inconclusive: Function 'calc_orf_gc' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:524:63: style:inconclusive: Function 'calc_orf_gc' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:525:25: style:inconclusive: Function 'calc_orf_gc' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:525:34: style:inconclusive: Function 'calc_orf_gc' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:525:56: style:inconclusive: Function 'calc_orf_gc' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:570:38: style:inconclusive: Function 'raw_coding_score' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:570:58: style:inconclusive: Function 'raw_coding_score' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:570:68: style:inconclusive: Function 'raw_coding_score' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:571:30: style:inconclusive: Function 'raw_coding_score' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:571:39: style:inconclusive: Function 'raw_coding_score' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:571:61: style:inconclusive: Function 'raw_coding_score' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:686:43: style:inconclusive: Function 'determine_sd_usage' argument 1 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:700:31: style:inconclusive: Function 'rbs_score' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:700:51: style:inconclusive: Function 'rbs_score' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:700:61: style:inconclusive: Function 'rbs_score' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:701:17: style:inconclusive: Function 'rbs_score' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:701:26: style:inconclusive: Function 'rbs_score' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:701:48: style:inconclusive: Function 'rbs_score' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:739:37: style:inconclusive: Function 'train_starts_sd' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:739:57: style:inconclusive: Function 'train_starts_sd' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:739:67: style:inconclusive: Function 'train_starts_sd' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:740:33: style:inconclusive: Function 'train_starts_sd' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:740:42: style:inconclusive: Function 'train_starts_sd' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:740:64: style:inconclusive: Function 'train_starts_sd' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:938:40: style:inconclusive: Function 'train_starts_nonsd' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:938:60: style:inconclusive: Function 'train_starts_nonsd' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:938:70: style:inconclusive: Function 'train_starts_nonsd' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:939:33: style:inconclusive: Function 'train_starts_nonsd' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:939:42: style:inconclusive: Function 'train_starts_nonsd' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:939:64: style:inconclusive: Function 'train_starts_nonsd' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1153:48: style:inconclusive: Function 'count_upstream_composition' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1153:57: style:inconclusive: Function 'count_upstream_composition' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1153:67: style:inconclusive: Function 'count_upstream_composition' argument 3 names different: declaration '' definition 'strand'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1154:37: style:inconclusive: Function 'count_upstream_composition' argument 4 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1154:60: style:inconclusive: Function 'count_upstream_composition' argument 5 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1171:48: style:inconclusive: Function 'score_upstream_composition' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1171:57: style:inconclusive: Function 'score_upstream_composition' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1171:77: style:inconclusive: Function 'score_upstream_composition' argument 3 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1172:51: style:inconclusive: Function 'score_upstream_composition' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1193:49: style:inconclusive: Function 'find_best_upstream_motif' argument 1 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1193:70: style:inconclusive: Function 'find_best_upstream_motif' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1194:46: style:inconclusive: Function 'find_best_upstream_motif' argument 3 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1194:56: style:inconclusive: Function 'find_best_upstream_motif' argument 4 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1194:76: style:inconclusive: Function 'find_best_upstream_motif' argument 5 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1195:35: style:inconclusive: Function 'find_best_upstream_motif' argument 6 names different: declaration '' definition 'stage'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1248:33: style:inconclusive: Function 'update_motif_counts' argument 1 names different: declaration '' definition 'mcnt'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1248:59: style:inconclusive: Function 'update_motif_counts' argument 2 names different: declaration '' definition 'zero'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1249:27: style:inconclusive: Function 'update_motif_counts' argument 3 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1249:47: style:inconclusive: Function 'update_motif_counts' argument 4 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1249:57: style:inconclusive: Function 'update_motif_counts' argument 5 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1249:77: style:inconclusive: Function 'update_motif_counts' argument 6 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1250:30: style:inconclusive: Function 'update_motif_counts' argument 7 names different: declaration '' definition 'stage'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1307:32: style:inconclusive: Function 'build_coverage_map' argument 1 names different: declaration '' definition 'real'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1307:54: style:inconclusive: Function 'build_coverage_map' argument 2 names different: declaration '' definition 'good'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1308:25: style:inconclusive: Function 'build_coverage_map' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1308:33: style:inconclusive: Function 'build_coverage_map' argument 4 names different: declaration '' definition 'stage'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1377:37: style:inconclusive: Function 'intergenic_mod' argument 1 names different: declaration '' definition 'n1'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1377:55: style:inconclusive: Function 'intergenic_mod' argument 2 names different: declaration '' definition 'n2'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1378:24: style:inconclusive: Function 'intergenic_mod' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1407:29: style:inconclusive: Function 'write_start_file' argument 1 names different: declaration '' definition 'fh'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1407:47: style:inconclusive: Function 'write_start_file' argument 2 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1407:56: style:inconclusive: Function 'write_start_file' argument 3 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1408:24: style:inconclusive: Function 'write_start_file' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1408:34: style:inconclusive: Function 'write_start_file' argument 5 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1408:44: style:inconclusive: Function 'write_start_file' argument 6 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1408:54: style:inconclusive: Function 'write_start_file' argument 7 names different: declaration '' definition 'is_meta'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1408:69: style:inconclusive: Function 'write_start_file' argument 8 names different: declaration '' definition 'mdesc'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1409:29: style:inconclusive: Function 'write_start_file' argument 9 names different: declaration '' definition 'version'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1409:44: style:inconclusive: Function 'write_start_file' argument 10 names different: declaration '' definition 'header'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1550:20: style:inconclusive: Function 'cross_mask' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1550:27: style:inconclusive: Function 'cross_mask' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1550:36: style:inconclusive: Function 'cross_mask' argument 3 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1550:47: style:inconclusive: Function 'cross_mask' argument 4 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1561:20: style:inconclusive: Function 'dmin' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1561:30: style:inconclusive: Function 'dmin' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1568:20: style:inconclusive: Function 'dmax' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1568:30: style:inconclusive: Function 'dmax' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1575:31: style:inconclusive: Function 'compare_nodes' argument 1 names different: declaration '' definition 'v1'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1575:47: style:inconclusive: Function 'compare_nodes' argument 2 names different: declaration '' definition 'v2'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1588:31: style:inconclusive: Function 'stopcmp_nodes' argument 1 names different: declaration '' definition 'v1'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:1588:47: style:inconclusive: Function 'stopcmp_nodes' argument 2 names different: declaration '' definition 'v2'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/node.c:263:26: style: Parameter 'gc' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1253:18: style: Variable 'mot' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/node.c:1377:37: style: Parameter 'n1' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1377:55: style: Parameter 'n2' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1378:24: style: Parameter 'tinf' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1408:69: style: Parameter 'mdesc' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1409:29: style: Parameter 'version' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1409:44: style: Parameter 'header' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1413:8: style: Variable 'type_string' can be declared as const array [constVariable] Prodigal-2.6.3/node.c:1550:36: style: Parameter 'mlist' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/node.c:1576:17: style: Variable 'n1' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/node.c:1576:22: style: Variable 'n2' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/node.c:1589:17: style: Variable 'n1' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/node.c:1589:22: style: Variable 'n2' can be declared as pointer to const [constVariablePointer] Prodigal-2.6.3/node.c:1422:49: error: Undefined behavior: Variable 'run_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/node.c:1426:42: error: Undefined behavior: Variable 'run_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/node.c:1428:66: error: Undefined behavior: Variable 'run_data' is used as parameter and destination in sprintf(). [sprintfOverlappingData] Prodigal-2.6.3/node.c:527:23: style: Variable 'gsize' is assigned a value that is never used. [unreadVariable] Prodigal-2.6.3/node.c:573:41: style: Variable 'gsize' is assigned a value that is never used. [unreadVariable] Prodigal-2.6.3/sequence.c:43:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/sequence.c:137:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] Prodigal-2.6.3/sequence.c:724:13: style: Array index 'cur_val' is used before limits check. [arrayIndexThenCheck] Prodigal-2.6.3/sequence.c:766:17: style: Array index 'k' is used before limits check. [arrayIndexThenCheck] Prodigal-2.6.3/sequence.c:792:13: style: Array index 'cur_val' is used before limits check. [arrayIndexThenCheck] Prodigal-2.6.3/sequence.c:342:53: style: Condition 'tinf->trans_table==22' is always false [knownConditionTrueFalse] Prodigal-2.6.3/sequence.c:646:29: warning: If memory allocation fails, then there is a possible null pointer dereference: counts [nullPointerOutOfMemory] Prodigal-2.6.3/sequence.c:645:25: note: Assuming allocation function fails Prodigal-2.6.3/sequence.c:645:12: note: Assignment 'counts=(int*)malloc(size*sizeof(int))', assigned value is 0 Prodigal-2.6.3/sequence.c:646:29: note: Null pointer dereference Prodigal-2.6.3/sequence.c:648:5: warning: If memory allocation fails, then there is a possible null pointer dereference: counts [nullPointerOutOfMemory] Prodigal-2.6.3/sequence.c:645:25: note: Assuming allocation function fails Prodigal-2.6.3/sequence.c:645:12: note: Assignment 'counts=(int*)malloc(size*sizeof(int))', assigned value is 0 Prodigal-2.6.3/sequence.c:648:5: note: Null pointer dereference Prodigal-2.6.3/sequence.c:649:5: warning: If memory allocation fails, then there is a possible null pointer dereference: counts [nullPointerOutOfMemory] Prodigal-2.6.3/sequence.c:645:25: note: Assuming allocation function fails Prodigal-2.6.3/sequence.c:645:12: note: Assignment 'counts=(int*)malloc(size*sizeof(int))', assigned value is 0 Prodigal-2.6.3/sequence.c:649:5: note: Null pointer dereference Prodigal-2.6.3/sequence.c:652:47: warning: If memory allocation fails, then there is a possible null pointer dereference: counts [nullPointerOutOfMemory] Prodigal-2.6.3/sequence.c:645:25: note: Assuming allocation function fails Prodigal-2.6.3/sequence.c:645:12: note: Assignment 'counts=(int*)malloc(size*sizeof(int))', assigned value is 0 Prodigal-2.6.3/sequence.c:652:47: note: Null pointer dereference Prodigal-2.6.3/sequence.c:32:29: style:inconclusive: Function 'read_seq_training' argument 1 names different: declaration '' definition 'fp'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:32:48: style:inconclusive: Function 'read_seq_training' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:32:68: style:inconclusive: Function 'read_seq_training' argument 3 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:33:31: style:inconclusive: Function 'read_seq_training' argument 4 names different: declaration '' definition 'gc'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:33:39: style:inconclusive: Function 'read_seq_training' argument 5 names different: declaration '' definition 'do_mask'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:33:54: style:inconclusive: Function 'read_seq_training' argument 6 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:33:66: style:inconclusive: Function 'read_seq_training' argument 7 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:122:26: style:inconclusive: Function 'next_seq_multi' argument 1 names different: declaration '' definition 'fp'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:122:45: style:inconclusive: Function 'next_seq_multi' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:122:65: style:inconclusive: Function 'next_seq_multi' argument 3 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:123:25: style:inconclusive: Function 'next_seq_multi' argument 4 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:123:39: style:inconclusive: Function 'next_seq_multi' argument 5 names different: declaration '' definition 'gc'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:123:47: style:inconclusive: Function 'next_seq_multi' argument 6 names different: declaration '' definition 'do_mask'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:123:62: style:inconclusive: Function 'next_seq_multi' argument 7 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:123:74: style:inconclusive: Function 'next_seq_multi' argument 8 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:124:26: style:inconclusive: Function 'next_seq_multi' argument 9 names different: declaration '' definition 'cur_hdr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:124:41: style:inconclusive: Function 'next_seq_multi' argument 10 names different: declaration '' definition 'new_hdr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:226:62: style:inconclusive: Function 'calc_short_header' argument 3 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:243:30: style:inconclusive: Function 'rcom_seq' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:243:50: style:inconclusive: Function 'rcom_seq' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:243:71: style:inconclusive: Function 'rcom_seq' argument 3 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:244:19: style:inconclusive: Function 'rcom_seq' argument 4 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:259:25: style:inconclusive: Function 'is_a' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:259:34: style:inconclusive: Function 'is_a' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:265:25: style:inconclusive: Function 'is_c' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:265:34: style:inconclusive: Function 'is_c' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:271:25: style:inconclusive: Function 'is_g' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:271:34: style:inconclusive: Function 'is_g' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:277:25: style:inconclusive: Function 'is_t' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:277:34: style:inconclusive: Function 'is_t' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:283:25: style:inconclusive: Function 'is_n' argument 1 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:283:35: style:inconclusive: Function 'is_n' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:288:28: style:inconclusive: Function 'is_stop' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:288:37: style:inconclusive: Function 'is_stop' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:288:58: style:inconclusive: Function 'is_stop' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:329:29: style:inconclusive: Function 'is_start' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:329:38: style:inconclusive: Function 'is_start' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:329:59: style:inconclusive: Function 'is_start' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:357:27: style:inconclusive: Function 'is_atg' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:357:36: style:inconclusive: Function 'is_atg' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:362:27: style:inconclusive: Function 'is_gtg' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:362:36: style:inconclusive: Function 'is_gtg' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:367:27: style:inconclusive: Function 'is_ttg' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:367:36: style:inconclusive: Function 'is_ttg' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:372:26: style:inconclusive: Function 'is_gc' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:372:35: style:inconclusive: Function 'is_gc' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:378:34: style:inconclusive: Function 'gc_content' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:378:43: style:inconclusive: Function 'gc_content' argument 2 names different: declaration '' definition 'a'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:378:50: style:inconclusive: Function 'gc_content' argument 3 names different: declaration '' definition 'b'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:389:27: style:inconclusive: Function 'amino' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:389:36: style:inconclusive: Function 'amino' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:389:57: style:inconclusive: Function 'amino' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:389:67: style:inconclusive: Function 'amino' argument 4 names different: declaration '' definition 'is_init'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:500:20: style:inconclusive: Function 'amino_num' argument 1 names different: declaration '' definition 'aa'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:525:23: style:inconclusive: Function 'amino_letter' argument 1 names different: declaration '' definition 'num'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:551:16: style:inconclusive: Function 'rframe' argument 1 names different: declaration '' definition 'fr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:551:24: style:inconclusive: Function 'rframe' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:559:16: style:inconclusive: Function 'max_fr' argument 1 names different: declaration '' definition 'n1'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:559:24: style:inconclusive: Function 'max_fr' argument 2 names different: declaration '' definition 'n2'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:559:32: style:inconclusive: Function 'max_fr' argument 3 names different: declaration '' definition 'n3'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:572:40: style:inconclusive: Function 'calc_most_gc_frame' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:572:49: style:inconclusive: Function 'calc_most_gc_frame' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:607:17: style:inconclusive: Function 'mer_ndx' argument 1 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:607:37: style:inconclusive: Function 'mer_ndx' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:607:46: style:inconclusive: Function 'mer_ndx' argument 3 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:624:21: style:inconclusive: Function 'mer_text' argument 1 names different: declaration '' definition 'qt'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:624:29: style:inconclusive: Function 'mer_text' argument 2 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:624:38: style:inconclusive: Function 'mer_text' argument 3 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:639:22: style:inconclusive: Function 'calc_mer_bg' argument 1 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:639:42: style:inconclusive: Function 'calc_mer_bg' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:639:62: style:inconclusive: Function 'calc_mer_bg' argument 3 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:639:72: style:inconclusive: Function 'calc_mer_bg' argument 4 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:640:26: style:inconclusive: Function 'calc_mer_bg' argument 5 names different: declaration '' definition 'bg'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:661:41: style:inconclusive: Function 'shine_dalgarno_exact' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:661:50: style:inconclusive: Function 'shine_dalgarno_exact' argument 2 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:661:59: style:inconclusive: Function 'shine_dalgarno_exact' argument 3 names different: declaration '' definition 'start'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:661:74: style:inconclusive: Function 'shine_dalgarno_exact' argument 4 names different: declaration '' definition 'rwt'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:737:38: style:inconclusive: Function 'shine_dalgarno_mm' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:737:47: style:inconclusive: Function 'shine_dalgarno_mm' argument 2 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:737:56: style:inconclusive: Function 'shine_dalgarno_mm' argument 3 names different: declaration '' definition 'start'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:737:71: style:inconclusive: Function 'shine_dalgarno_mm' argument 4 names different: declaration '' definition 'rwt'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:801:14: style:inconclusive: Function 'imin' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:801:21: style:inconclusive: Function 'imin' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/sequence.c:226:30: style: Parameter 'header' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/sequence.c:288:58: style: Parameter 'tinf' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/sequence.c:329:59: style: Parameter 'tinf' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/sequence.c:626:8: style: Variable 'letters' can be declared as const array [constVariable] Prodigal-2.6.3/sequence.c:661:74: style: Parameter 'rwt' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/sequence.c:737:71: style: Parameter 'rwt' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/training.c:25:30: style:inconclusive: Function 'read_training_file' argument 1 names different: declaration '' definition 'fn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:25:52: style:inconclusive: Function 'read_training_file' argument 2 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:38:31: style:inconclusive: Function 'write_training_file' argument 1 names different: declaration '' definition 'fn'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:38:53: style:inconclusive: Function 'write_training_file' argument 2 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:55:48: style:inconclusive: Function 'initialize_metagenome_0' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:81:48: style:inconclusive: Function 'initialize_metagenome_1' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:107:48: style:inconclusive: Function 'initialize_metagenome_2' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:133:48: style:inconclusive: Function 'initialize_metagenome_3' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:159:48: style:inconclusive: Function 'initialize_metagenome_4' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:185:48: style:inconclusive: Function 'initialize_metagenome_5' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:211:48: style:inconclusive: Function 'initialize_metagenome_6' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:237:48: style:inconclusive: Function 'initialize_metagenome_7' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:263:48: style:inconclusive: Function 'initialize_metagenome_8' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:289:48: style:inconclusive: Function 'initialize_metagenome_9' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:315:49: style:inconclusive: Function 'initialize_metagenome_10' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:341:49: style:inconclusive: Function 'initialize_metagenome_11' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:367:49: style:inconclusive: Function 'initialize_metagenome_12' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:393:49: style:inconclusive: Function 'initialize_metagenome_13' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:419:49: style:inconclusive: Function 'initialize_metagenome_14' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:445:49: style:inconclusive: Function 'initialize_metagenome_15' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:471:49: style:inconclusive: Function 'initialize_metagenome_16' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:497:49: style:inconclusive: Function 'initialize_metagenome_17' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:523:49: style:inconclusive: Function 'initialize_metagenome_18' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:549:49: style:inconclusive: Function 'initialize_metagenome_19' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:575:49: style:inconclusive: Function 'initialize_metagenome_20' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:601:49: style:inconclusive: Function 'initialize_metagenome_21' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:627:49: style:inconclusive: Function 'initialize_metagenome_22' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:653:49: style:inconclusive: Function 'initialize_metagenome_23' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:679:49: style:inconclusive: Function 'initialize_metagenome_24' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:705:49: style:inconclusive: Function 'initialize_metagenome_25' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:731:49: style:inconclusive: Function 'initialize_metagenome_26' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:757:49: style:inconclusive: Function 'initialize_metagenome_27' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:783:49: style:inconclusive: Function 'initialize_metagenome_28' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:809:49: style:inconclusive: Function 'initialize_metagenome_29' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:835:49: style:inconclusive: Function 'initialize_metagenome_30' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:861:49: style:inconclusive: Function 'initialize_metagenome_31' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:887:49: style:inconclusive: Function 'initialize_metagenome_32' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:913:49: style:inconclusive: Function 'initialize_metagenome_33' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:939:49: style:inconclusive: Function 'initialize_metagenome_34' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:965:49: style:inconclusive: Function 'initialize_metagenome_35' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:991:49: style:inconclusive: Function 'initialize_metagenome_36' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1017:49: style:inconclusive: Function 'initialize_metagenome_37' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1043:49: style:inconclusive: Function 'initialize_metagenome_38' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1069:49: style:inconclusive: Function 'initialize_metagenome_39' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1095:49: style:inconclusive: Function 'initialize_metagenome_40' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1121:49: style:inconclusive: Function 'initialize_metagenome_41' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1147:49: style:inconclusive: Function 'initialize_metagenome_42' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1173:49: style:inconclusive: Function 'initialize_metagenome_43' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1199:49: style:inconclusive: Function 'initialize_metagenome_44' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1225:49: style:inconclusive: Function 'initialize_metagenome_45' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1251:49: style:inconclusive: Function 'initialize_metagenome_46' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1277:49: style:inconclusive: Function 'initialize_metagenome_47' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1303:49: style:inconclusive: Function 'initialize_metagenome_48' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:1329:49: style:inconclusive: Function 'initialize_metagenome_49' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] Prodigal-2.6.3/training.c:25:30: style: Parameter 'fn' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/training.c:38:31: style: Parameter 'fn' can be declared as pointer to const [constParameterPointer] Prodigal-2.6.3/training.c:38:53: style: Parameter 'tinf' can be declared as pointer to const [constParameterPointer] diff: head Prodigal-2.6.3/bitmap.c:24:35: style:inconclusive: Function 'test' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/bitmap.c:24:43: style:inconclusive: Function 'test' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/bitmap.c:29:27: style:inconclusive: Function 'clear' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/bitmap.c:29:35: style:inconclusive: Function 'clear' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/bitmap.c:34:25: style:inconclusive: Function 'set' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/bitmap.c:34:33: style:inconclusive: Function 'set' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/bitmap.c:39:28: style:inconclusive: Function 'toggle' argument 1 names different: declaration '' definition 'bm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/bitmap.c:39:36: style:inconclusive: Function 'toggle' argument 2 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:123:37: style:inconclusive: Function 'score_connection' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:123:46: style:inconclusive: Function 'score_connection' argument 2 names different: declaration '' definition 'p1'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:123:54: style:inconclusive: Function 'score_connection' argument 3 names different: declaration '' definition 'p2'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:123:76: style:inconclusive: Function 'score_connection' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:124:27: style:inconclusive: Function 'score_connection' argument 5 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:306:40: style:inconclusive: Function 'eliminate_bad_genes' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:306:49: style:inconclusive: Function 'eliminate_bad_genes' argument 2 names different: declaration '' definition 'dbeg'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:306:73: style:inconclusive: Function 'eliminate_bad_genes' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:31:25: style:inconclusive: Function 'dprog' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:31:34: style:inconclusive: Function 'dprog' argument 2 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:31:56: style:inconclusive: Function 'dprog' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/dprog.c:31:66: style:inconclusive: Function 'dprog' argument 4 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:196:37: style:inconclusive: Function 'record_gene_data' argument 1 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:196:48: style:inconclusive: Function 'record_gene_data' argument 2 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:196:66: style:inconclusive: Function 'record_gene_data' argument 3 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:197:41: style:inconclusive: Function 'record_gene_data' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:197:51: style:inconclusive: Function 'record_gene_data' argument 5 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:25:29: style:inconclusive: Function 'add_genes' argument 1 names different: declaration '' definition 'glist'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:25:50: style:inconclusive: Function 'add_genes' argument 2 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:25:59: style:inconclusive: Function 'add_genes' argument 3 names different: declaration '' definition 'dbeg'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:329:24: style:inconclusive: Function 'print_genes' argument 1 names different: declaration '' definition 'fp'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:329:42: style:inconclusive: Function 'print_genes' argument 2 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:329:53: style:inconclusive: Function 'print_genes' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:329:71: style:inconclusive: Function 'print_genes' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:330:22: style:inconclusive: Function 'print_genes' argument 5 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:330:32: style:inconclusive: Function 'print_genes' argument 6 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:330:42: style:inconclusive: Function 'print_genes' argument 7 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:330:52: style:inconclusive: Function 'print_genes' argument 8 names different: declaration '' definition 'is_meta'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:330:67: style:inconclusive: Function 'print_genes' argument 9 names different: declaration '' definition 'mdesc'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:331:36: style:inconclusive: Function 'print_genes' argument 10 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:331:48: style:inconclusive: Function 'print_genes' argument 11 names different: declaration '' definition 'header'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:331:62: style:inconclusive: Function 'print_genes' argument 12 names different: declaration '' definition 'short_hdr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:332:24: style:inconclusive: Function 'print_genes' argument 13 names different: declaration '' definition 'version'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:435:31: style:inconclusive: Function 'write_translations' argument 1 names different: declaration '' definition 'fh'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:435:49: style:inconclusive: Function 'write_translations' argument 2 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:435:60: style:inconclusive: Function 'write_translations' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:436:32: style:inconclusive: Function 'write_translations' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:436:52: style:inconclusive: Function 'write_translations' argument 5 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:436:72: style:inconclusive: Function 'write_translations' argument 6 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:437:40: style:inconclusive: Function 'write_translations' argument 7 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:437:50: style:inconclusive: Function 'write_translations' argument 8 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:437:74: style:inconclusive: Function 'write_translations' argument 9 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:438:29: style:inconclusive: Function 'write_translations' argument 10 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:438:41: style:inconclusive: Function 'write_translations' argument 11 names different: declaration '' definition 'short_hdr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:471:34: style:inconclusive: Function 'write_nucleotide_seqs' argument 1 names different: declaration '' definition 'fh'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:471:52: style:inconclusive: Function 'write_nucleotide_seqs' argument 2 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:471:63: style:inconclusive: Function 'write_nucleotide_seqs' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:472:35: style:inconclusive: Function 'write_nucleotide_seqs' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:472:55: style:inconclusive: Function 'write_nucleotide_seqs' argument 5 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:472:75: style:inconclusive: Function 'write_nucleotide_seqs' argument 6 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:473:43: style:inconclusive: Function 'write_nucleotide_seqs' argument 7 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:473:53: style:inconclusive: Function 'write_nucleotide_seqs' argument 8 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:474:29: style:inconclusive: Function 'write_nucleotide_seqs' argument 9 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:474:39: style:inconclusive: Function 'write_nucleotide_seqs' argument 10 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:474:51: style:inconclusive: Function 'write_nucleotide_seqs' argument 11 names different: declaration '' definition 'short_hdr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:509:36: style:inconclusive: Function 'calculate_confidence' argument 1 names different: declaration '' definition 'score'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:509:50: style:inconclusive: Function 'calculate_confidence' argument 2 names different: declaration '' definition 'start_weight'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:75:39: style:inconclusive: Function 'tweak_final_starts' argument 1 names different: declaration '' definition 'genes'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:75:50: style:inconclusive: Function 'tweak_final_starts' argument 2 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:75:68: style:inconclusive: Function 'tweak_final_starts' argument 3 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:76:29: style:inconclusive: Function 'tweak_final_starts' argument 4 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/gene.c:76:51: style:inconclusive: Function 'tweak_final_starts' argument 5 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/main.c:630:18: style:inconclusive: Function 'usage' argument 1 names different: declaration '' definition 'msg'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/main.c:682:39: style:inconclusive: Function 'copy_standard_input_to_file' argument 1 names different: declaration '' definition 'path'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/main.c:682:49: style:inconclusive: Function 'copy_standard_input_to_file' argument 2 names different: declaration '' definition 'quiet'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/metagenomic.c:27:59: style:inconclusive: Function 'initialize_metagenomic_bins' argument 1 names different: declaration '' definition 'meta'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1153:48: style:inconclusive: Function 'count_upstream_composition' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1153:57: style:inconclusive: Function 'count_upstream_composition' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1153:67: style:inconclusive: Function 'count_upstream_composition' argument 3 names different: declaration '' definition 'strand'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1154:37: style:inconclusive: Function 'count_upstream_composition' argument 4 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1154:60: style:inconclusive: Function 'count_upstream_composition' argument 5 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1171:48: style:inconclusive: Function 'score_upstream_composition' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1171:57: style:inconclusive: Function 'score_upstream_composition' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1171:77: style:inconclusive: Function 'score_upstream_composition' argument 3 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1172:51: style:inconclusive: Function 'score_upstream_composition' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1193:49: style:inconclusive: Function 'find_best_upstream_motif' argument 1 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1193:70: style:inconclusive: Function 'find_best_upstream_motif' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1194:46: style:inconclusive: Function 'find_best_upstream_motif' argument 3 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1194:56: style:inconclusive: Function 'find_best_upstream_motif' argument 4 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1194:76: style:inconclusive: Function 'find_best_upstream_motif' argument 5 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1195:35: style:inconclusive: Function 'find_best_upstream_motif' argument 6 names different: declaration '' definition 'stage'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1248:33: style:inconclusive: Function 'update_motif_counts' argument 1 names different: declaration '' definition 'mcnt'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1248:59: style:inconclusive: Function 'update_motif_counts' argument 2 names different: declaration '' definition 'zero'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1249:27: style:inconclusive: Function 'update_motif_counts' argument 3 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1249:47: style:inconclusive: Function 'update_motif_counts' argument 4 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1249:57: style:inconclusive: Function 'update_motif_counts' argument 5 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1249:77: style:inconclusive: Function 'update_motif_counts' argument 6 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1250:30: style:inconclusive: Function 'update_motif_counts' argument 7 names different: declaration '' definition 'stage'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1307:32: style:inconclusive: Function 'build_coverage_map' argument 1 names different: declaration '' definition 'real'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1307:54: style:inconclusive: Function 'build_coverage_map' argument 2 names different: declaration '' definition 'good'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1308:25: style:inconclusive: Function 'build_coverage_map' argument 3 names different: declaration '' definition 'ng'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1308:33: style:inconclusive: Function 'build_coverage_map' argument 4 names different: declaration '' definition 'stage'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1377:37: style:inconclusive: Function 'intergenic_mod' argument 1 names different: declaration '' definition 'n1'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1377:55: style:inconclusive: Function 'intergenic_mod' argument 2 names different: declaration '' definition 'n2'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1378:24: style:inconclusive: Function 'intergenic_mod' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1407:29: style:inconclusive: Function 'write_start_file' argument 1 names different: declaration '' definition 'fh'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1407:47: style:inconclusive: Function 'write_start_file' argument 2 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1407:56: style:inconclusive: Function 'write_start_file' argument 3 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1408:24: style:inconclusive: Function 'write_start_file' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1408:34: style:inconclusive: Function 'write_start_file' argument 5 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1408:44: style:inconclusive: Function 'write_start_file' argument 6 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1408:54: style:inconclusive: Function 'write_start_file' argument 7 names different: declaration '' definition 'is_meta'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1408:69: style:inconclusive: Function 'write_start_file' argument 8 names different: declaration '' definition 'mdesc'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1409:29: style:inconclusive: Function 'write_start_file' argument 9 names different: declaration '' definition 'version'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1409:44: style:inconclusive: Function 'write_start_file' argument 10 names different: declaration '' definition 'header'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1550:20: style:inconclusive: Function 'cross_mask' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1550:27: style:inconclusive: Function 'cross_mask' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1550:36: style:inconclusive: Function 'cross_mask' argument 3 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1550:47: style:inconclusive: Function 'cross_mask' argument 4 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1561:20: style:inconclusive: Function 'dmin' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1561:30: style:inconclusive: Function 'dmin' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1568:20: style:inconclusive: Function 'dmax' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1568:30: style:inconclusive: Function 'dmax' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1575:31: style:inconclusive: Function 'compare_nodes' argument 1 names different: declaration '' definition 'v1'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1575:47: style:inconclusive: Function 'compare_nodes' argument 2 names different: declaration '' definition 'v2'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1588:31: style:inconclusive: Function 'stopcmp_nodes' argument 1 names different: declaration '' definition 'v1'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:1588:47: style:inconclusive: Function 'stopcmp_nodes' argument 2 names different: declaration '' definition 'v2'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:176:38: style:inconclusive: Function 'reset_node_scores' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:176:47: style:inconclusive: Function 'reset_node_scores' argument 2 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:208:46: style:inconclusive: Function 'record_overlapping_starts' argument 1 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:208:55: style:inconclusive: Function 'record_overlapping_starts' argument 2 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:209:33: style:inconclusive: Function 'record_overlapping_starts' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:209:43: style:inconclusive: Function 'record_overlapping_starts' argument 4 names different: declaration '' definition 'flag'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:263:26: style:inconclusive: Function 'record_gc_bias' argument 1 names different: declaration '' definition 'gc'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:263:44: style:inconclusive: Function 'record_gc_bias' argument 2 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:263:53: style:inconclusive: Function 'record_gc_bias' argument 3 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:264:22: style:inconclusive: Function 'record_gc_bias' argument 4 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:28:30: style:inconclusive: Function 'add_nodes' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:28:50: style:inconclusive: Function 'add_nodes' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:28:60: style:inconclusive: Function 'add_nodes' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:29:16: style:inconclusive: Function 'add_nodes' argument 4 names different: declaration '' definition 'nodes'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:29:27: style:inconclusive: Function 'add_nodes' argument 5 names different: declaration '' definition 'closed'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:29:41: style:inconclusive: Function 'add_nodes' argument 6 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:29:52: style:inconclusive: Function 'add_nodes' argument 7 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:30:16: style:inconclusive: Function 'add_nodes' argument 8 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:325:42: style:inconclusive: Function 'calc_dicodon_gene' argument 1 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:325:63: style:inconclusive: Function 'calc_dicodon_gene' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:326:30: style:inconclusive: Function 'calc_dicodon_gene' argument 3 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:326:40: style:inconclusive: Function 'calc_dicodon_gene' argument 4 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:326:60: style:inconclusive: Function 'calc_dicodon_gene' argument 5 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:326:69: style:inconclusive: Function 'calc_dicodon_gene' argument 6 names different: declaration '' definition 'dbeg'. [funcArgNamesDifferentUnnamed] 2.20.0 Prodigal-2.6.3/node.c:331:54: style: Variable 'prob[i]' is assigned a value that is never used. [unreadVariable] head Prodigal-2.6.3/node.c:375:33: style:inconclusive: Function 'score_nodes' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:375:53: style:inconclusive: Function 'score_nodes' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:375:63: style:inconclusive: Function 'score_nodes' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:376:32: style:inconclusive: Function 'score_nodes' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:376:41: style:inconclusive: Function 'score_nodes' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:376:63: style:inconclusive: Function 'score_nodes' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:377:22: style:inconclusive: Function 'score_nodes' argument 7 names different: declaration '' definition 'closed'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:377:34: style:inconclusive: Function 'score_nodes' argument 8 names different: declaration '' definition 'is_meta'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:524:33: style:inconclusive: Function 'calc_orf_gc' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:524:53: style:inconclusive: Function 'calc_orf_gc' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:524:63: style:inconclusive: Function 'calc_orf_gc' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:525:25: style:inconclusive: Function 'calc_orf_gc' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:525:34: style:inconclusive: Function 'calc_orf_gc' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:525:56: style:inconclusive: Function 'calc_orf_gc' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:570:38: style:inconclusive: Function 'raw_coding_score' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:570:58: style:inconclusive: Function 'raw_coding_score' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:570:68: style:inconclusive: Function 'raw_coding_score' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:571:30: style:inconclusive: Function 'raw_coding_score' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:571:39: style:inconclusive: Function 'raw_coding_score' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:571:61: style:inconclusive: Function 'raw_coding_score' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:686:43: style:inconclusive: Function 'determine_sd_usage' argument 1 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:700:31: style:inconclusive: Function 'rbs_score' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:700:51: style:inconclusive: Function 'rbs_score' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:700:61: style:inconclusive: Function 'rbs_score' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:701:17: style:inconclusive: Function 'rbs_score' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:701:26: style:inconclusive: Function 'rbs_score' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:701:48: style:inconclusive: Function 'rbs_score' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:739:37: style:inconclusive: Function 'train_starts_sd' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:739:57: style:inconclusive: Function 'train_starts_sd' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:739:67: style:inconclusive: Function 'train_starts_sd' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:740:33: style:inconclusive: Function 'train_starts_sd' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:740:42: style:inconclusive: Function 'train_starts_sd' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:740:64: style:inconclusive: Function 'train_starts_sd' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:938:40: style:inconclusive: Function 'train_starts_nonsd' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:938:60: style:inconclusive: Function 'train_starts_nonsd' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:938:70: style:inconclusive: Function 'train_starts_nonsd' argument 3 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:939:33: style:inconclusive: Function 'train_starts_nonsd' argument 4 names different: declaration '' definition 'nod'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:939:42: style:inconclusive: Function 'train_starts_nonsd' argument 5 names different: declaration '' definition 'nn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/node.c:939:64: style:inconclusive: Function 'train_starts_nonsd' argument 6 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:122:26: style:inconclusive: Function 'next_seq_multi' argument 1 names different: declaration '' definition 'fp'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:122:45: style:inconclusive: Function 'next_seq_multi' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:122:65: style:inconclusive: Function 'next_seq_multi' argument 3 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:123:25: style:inconclusive: Function 'next_seq_multi' argument 4 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:123:39: style:inconclusive: Function 'next_seq_multi' argument 5 names different: declaration '' definition 'gc'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:123:47: style:inconclusive: Function 'next_seq_multi' argument 6 names different: declaration '' definition 'do_mask'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:123:62: style:inconclusive: Function 'next_seq_multi' argument 7 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:123:74: style:inconclusive: Function 'next_seq_multi' argument 8 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:124:26: style:inconclusive: Function 'next_seq_multi' argument 9 names different: declaration '' definition 'cur_hdr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:124:41: style:inconclusive: Function 'next_seq_multi' argument 10 names different: declaration '' definition 'new_hdr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:226:62: style:inconclusive: Function 'calc_short_header' argument 3 names different: declaration '' definition 'sctr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:243:30: style:inconclusive: Function 'rcom_seq' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:243:50: style:inconclusive: Function 'rcom_seq' argument 2 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:243:71: style:inconclusive: Function 'rcom_seq' argument 3 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:244:19: style:inconclusive: Function 'rcom_seq' argument 4 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:259:25: style:inconclusive: Function 'is_a' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:259:34: style:inconclusive: Function 'is_a' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:265:25: style:inconclusive: Function 'is_c' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:265:34: style:inconclusive: Function 'is_c' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:271:25: style:inconclusive: Function 'is_g' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:271:34: style:inconclusive: Function 'is_g' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:277:25: style:inconclusive: Function 'is_t' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:277:34: style:inconclusive: Function 'is_t' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:283:25: style:inconclusive: Function 'is_n' argument 1 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:283:35: style:inconclusive: Function 'is_n' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:288:28: style:inconclusive: Function 'is_stop' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:288:37: style:inconclusive: Function 'is_stop' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:288:58: style:inconclusive: Function 'is_stop' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:329:29: style:inconclusive: Function 'is_start' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:329:38: style:inconclusive: Function 'is_start' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:329:59: style:inconclusive: Function 'is_start' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:32:29: style:inconclusive: Function 'read_seq_training' argument 1 names different: declaration '' definition 'fp'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:32:48: style:inconclusive: Function 'read_seq_training' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:32:68: style:inconclusive: Function 'read_seq_training' argument 3 names different: declaration '' definition 'useq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:33:31: style:inconclusive: Function 'read_seq_training' argument 4 names different: declaration '' definition 'gc'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:33:39: style:inconclusive: Function 'read_seq_training' argument 5 names different: declaration '' definition 'do_mask'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:33:54: style:inconclusive: Function 'read_seq_training' argument 6 names different: declaration '' definition 'mlist'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:33:66: style:inconclusive: Function 'read_seq_training' argument 7 names different: declaration '' definition 'nm'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:357:27: style:inconclusive: Function 'is_atg' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:357:36: style:inconclusive: Function 'is_atg' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:362:27: style:inconclusive: Function 'is_gtg' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:362:36: style:inconclusive: Function 'is_gtg' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:367:27: style:inconclusive: Function 'is_ttg' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:367:36: style:inconclusive: Function 'is_ttg' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:372:26: style:inconclusive: Function 'is_gc' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:372:35: style:inconclusive: Function 'is_gc' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:378:34: style:inconclusive: Function 'gc_content' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:378:43: style:inconclusive: Function 'gc_content' argument 2 names different: declaration '' definition 'a'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:378:50: style:inconclusive: Function 'gc_content' argument 3 names different: declaration '' definition 'b'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:389:27: style:inconclusive: Function 'amino' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:389:36: style:inconclusive: Function 'amino' argument 2 names different: declaration '' definition 'n'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:389:57: style:inconclusive: Function 'amino' argument 3 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:389:67: style:inconclusive: Function 'amino' argument 4 names different: declaration '' definition 'is_init'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:500:20: style:inconclusive: Function 'amino_num' argument 1 names different: declaration '' definition 'aa'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:525:23: style:inconclusive: Function 'amino_letter' argument 1 names different: declaration '' definition 'num'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:551:16: style:inconclusive: Function 'rframe' argument 1 names different: declaration '' definition 'fr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:551:24: style:inconclusive: Function 'rframe' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:559:16: style:inconclusive: Function 'max_fr' argument 1 names different: declaration '' definition 'n1'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:559:24: style:inconclusive: Function 'max_fr' argument 2 names different: declaration '' definition 'n2'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:559:32: style:inconclusive: Function 'max_fr' argument 3 names different: declaration '' definition 'n3'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:572:40: style:inconclusive: Function 'calc_most_gc_frame' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:572:49: style:inconclusive: Function 'calc_most_gc_frame' argument 2 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:607:17: style:inconclusive: Function 'mer_ndx' argument 1 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:607:37: style:inconclusive: Function 'mer_ndx' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:607:46: style:inconclusive: Function 'mer_ndx' argument 3 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:624:21: style:inconclusive: Function 'mer_text' argument 1 names different: declaration '' definition 'qt'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:624:29: style:inconclusive: Function 'mer_text' argument 2 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:624:38: style:inconclusive: Function 'mer_text' argument 3 names different: declaration '' definition 'ndx'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:639:22: style:inconclusive: Function 'calc_mer_bg' argument 1 names different: declaration '' definition 'len'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:639:42: style:inconclusive: Function 'calc_mer_bg' argument 2 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:639:62: style:inconclusive: Function 'calc_mer_bg' argument 3 names different: declaration '' definition 'rseq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:639:72: style:inconclusive: Function 'calc_mer_bg' argument 4 names different: declaration '' definition 'slen'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:640:26: style:inconclusive: Function 'calc_mer_bg' argument 5 names different: declaration '' definition 'bg'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:661:41: style:inconclusive: Function 'shine_dalgarno_exact' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:661:50: style:inconclusive: Function 'shine_dalgarno_exact' argument 2 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:661:59: style:inconclusive: Function 'shine_dalgarno_exact' argument 3 names different: declaration '' definition 'start'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:661:74: style:inconclusive: Function 'shine_dalgarno_exact' argument 4 names different: declaration '' definition 'rwt'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:737:38: style:inconclusive: Function 'shine_dalgarno_mm' argument 1 names different: declaration '' definition 'seq'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:737:47: style:inconclusive: Function 'shine_dalgarno_mm' argument 2 names different: declaration '' definition 'pos'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:737:56: style:inconclusive: Function 'shine_dalgarno_mm' argument 3 names different: declaration '' definition 'start'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:737:71: style:inconclusive: Function 'shine_dalgarno_mm' argument 4 names different: declaration '' definition 'rwt'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:801:14: style:inconclusive: Function 'imin' argument 1 names different: declaration '' definition 'x'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/sequence.c:801:21: style:inconclusive: Function 'imin' argument 2 names different: declaration '' definition 'y'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1017:49: style:inconclusive: Function 'initialize_metagenome_37' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1043:49: style:inconclusive: Function 'initialize_metagenome_38' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1069:49: style:inconclusive: Function 'initialize_metagenome_39' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:107:48: style:inconclusive: Function 'initialize_metagenome_2' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1095:49: style:inconclusive: Function 'initialize_metagenome_40' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1121:49: style:inconclusive: Function 'initialize_metagenome_41' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1147:49: style:inconclusive: Function 'initialize_metagenome_42' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1173:49: style:inconclusive: Function 'initialize_metagenome_43' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1199:49: style:inconclusive: Function 'initialize_metagenome_44' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1225:49: style:inconclusive: Function 'initialize_metagenome_45' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1251:49: style:inconclusive: Function 'initialize_metagenome_46' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1277:49: style:inconclusive: Function 'initialize_metagenome_47' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1303:49: style:inconclusive: Function 'initialize_metagenome_48' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:1329:49: style:inconclusive: Function 'initialize_metagenome_49' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:133:48: style:inconclusive: Function 'initialize_metagenome_3' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:159:48: style:inconclusive: Function 'initialize_metagenome_4' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:185:48: style:inconclusive: Function 'initialize_metagenome_5' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:211:48: style:inconclusive: Function 'initialize_metagenome_6' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:237:48: style:inconclusive: Function 'initialize_metagenome_7' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:25:30: style:inconclusive: Function 'read_training_file' argument 1 names different: declaration '' definition 'fn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:25:52: style:inconclusive: Function 'read_training_file' argument 2 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:263:48: style:inconclusive: Function 'initialize_metagenome_8' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:289:48: style:inconclusive: Function 'initialize_metagenome_9' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:315:49: style:inconclusive: Function 'initialize_metagenome_10' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:341:49: style:inconclusive: Function 'initialize_metagenome_11' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:367:49: style:inconclusive: Function 'initialize_metagenome_12' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:38:31: style:inconclusive: Function 'write_training_file' argument 1 names different: declaration '' definition 'fn'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:38:53: style:inconclusive: Function 'write_training_file' argument 2 names different: declaration '' definition 'tinf'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:393:49: style:inconclusive: Function 'initialize_metagenome_13' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:419:49: style:inconclusive: Function 'initialize_metagenome_14' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:445:49: style:inconclusive: Function 'initialize_metagenome_15' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:471:49: style:inconclusive: Function 'initialize_metagenome_16' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:497:49: style:inconclusive: Function 'initialize_metagenome_17' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:523:49: style:inconclusive: Function 'initialize_metagenome_18' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:549:49: style:inconclusive: Function 'initialize_metagenome_19' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:55:48: style:inconclusive: Function 'initialize_metagenome_0' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:575:49: style:inconclusive: Function 'initialize_metagenome_20' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:601:49: style:inconclusive: Function 'initialize_metagenome_21' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:627:49: style:inconclusive: Function 'initialize_metagenome_22' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:653:49: style:inconclusive: Function 'initialize_metagenome_23' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:679:49: style:inconclusive: Function 'initialize_metagenome_24' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:705:49: style:inconclusive: Function 'initialize_metagenome_25' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:731:49: style:inconclusive: Function 'initialize_metagenome_26' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:757:49: style:inconclusive: Function 'initialize_metagenome_27' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:783:49: style:inconclusive: Function 'initialize_metagenome_28' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:809:49: style:inconclusive: Function 'initialize_metagenome_29' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:81:48: style:inconclusive: Function 'initialize_metagenome_1' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:835:49: style:inconclusive: Function 'initialize_metagenome_30' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:861:49: style:inconclusive: Function 'initialize_metagenome_31' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:887:49: style:inconclusive: Function 'initialize_metagenome_32' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:913:49: style:inconclusive: Function 'initialize_metagenome_33' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:939:49: style:inconclusive: Function 'initialize_metagenome_34' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:965:49: style:inconclusive: Function 'initialize_metagenome_35' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] head Prodigal-2.6.3/training.c:991:49: style:inconclusive: Function 'initialize_metagenome_36' argument 1 names different: declaration '' definition 'tptr'. [funcArgNamesDifferentUnnamed] DONE