2026-05-04 08:09
ftp://ftp.de.debian.org/debian/pool/main/p/plast/plast_2.3.2+dfsg.orig.tar.xz
cppcheck-options: --library=posix --library=gnu --library=bsd --library=zlib  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j1
platform: Linux-6.8.0-1047-aws-aarch64-with-glibc2.35
python: 3.10.12
client-version: 1.4.0
compiler: g++ (Ubuntu 11.4.0-1ubuntu1~22.04.3) 11.4.0
cppcheck: head 2.20.0
head-info: e5c4a73 (2026-05-01 11:10:43 +0200)
count: 1001 961
elapsed-time: 3.6 3.2
head-timing-info:

old-timing-info:

head results:
plast_source_v2.3.2/src/algo/core/impl/AbstractAlgorithm.cpp:276:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable isFilled [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AbstractAlgorithm.cpp:436:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Method [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AbstractAlgorithm.cpp:476:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable nbAlignPerHit [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AbstractAlgorithm.cpp:518:86: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isRunning [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AbstractAlgorithm.cpp:580:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ITER_ON_GOING [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AbstractAlgorithm.cpp:645:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _algo [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgoIndexatorNucleotide.cpp:87:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _subjectDatabase [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgoIndexatorNucleotide.cpp:103:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sbjHasChanged [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgoIndexatorNucleotide.cpp:120:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _qryHasChanged [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgoIndexatorNucleotide.cpp:137:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _queryDatabase [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgorithmPlastn.cpp:97:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _subjectFrames [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgorithmPlastn.cpp:181:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable XdroppofGap [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgorithmPlastn.cpp:240:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _filter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgorithmPlastn.cpp:345:80: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable extendGapCost [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgorithmPlastn.cpp:391:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _hspContainer [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgorithmPlastn.cpp:421:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _subjectFrames [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/AlgorithmPlastn.cpp:482:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentPass [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/BasicAlgoIndexator.cpp:122:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _subjectDatabase [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/BasicAlgoIndexator.cpp:153:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _queryDatabase [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/BasicAlgoIndexator.cpp:183:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _queryIndex [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/BasicAlgoIndexator.cpp:48:5: style: Class 'IndexBuildCommand' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/algo/core/impl/BasicAlgoIndexator.cpp:59:5: style: Class 'IndexMergeCommand' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:75:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sbjDbList [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:101:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sbjDbList [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:287:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable subjectUri [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:311:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable queryUri [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:180:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:208:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:259:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/algo/core/impl/DatabasesProvider.cpp:353:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:154:75: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ENUM_TYPE_UNKNOWN [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:183:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ENUM_PLASTP [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:330:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_NB_PROCESSORS [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:394:75: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ENUM_TYPE_UNKNOWN [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:490:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FACTORY_STATISTICS [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:518:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSEED [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:553:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ENUM_PLASTP [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:672:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_OPTIM_FILTER_UNGAP [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:746:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FACTORY_HIT_SMALLGAP [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:791:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FACTORY_HIT_FULLGAP [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:861:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FACTORY_HIT_COMPOSITION [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:921:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FACTORY_GAP_RESULT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:951:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FACTORY_UNGAP_RESULT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:980:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_OUTPUT_FILE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:1033:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FACTORY_SPLITTER [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:1085:72: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _properties [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:1106:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_ALGO_TYPE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:345:10: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:349:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:345:10: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:590:10: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:594:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:590:10: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:689:10: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:693:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:689:10: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:756:10: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:760:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:756:10: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:926:5: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:930:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:926:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:953:5: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:957:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:953:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:1039:10: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:1043:5: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:1039:10: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:396:15: style: Redundant initialization for 'databaseType'. The initialized value is overwritten before it is read. [redundantInitialization]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:394:53: note: databaseType is initialized
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:396:15: note: databaseType is overwritten
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:809:16: style: Variable 'result' is reassigned a value before the old one has been used. [redundantAssignment]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:795:16: note: result is assigned
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:809:16: note: result is overwritten
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:879:16: style: Variable 'result' is reassigned a value before the old one has been used. [redundantAssignment]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:865:16: note: result is assigned
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:879:16: note: result is overwritten
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:923:34: style: Redundant initialization for 'prop'. The initialized value is overwritten before it is read. [redundantInitialization]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:921:21: note: prop is initialized
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoConfig.cpp:923:34: note: prop is overwritten
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:119:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _properties [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:225:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_ALGO_TYPE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:259:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _parametersList [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:455:91: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FRAME_1 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:547:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_ALGO_TYPE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:645:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_SUBJECT_URI [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:594:11: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:595:6: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:594:11: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:134:10: style: The scope of the variable 'inferType' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:252:17: style: The scope of the variable 'keyFinal' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:151:43: style: Variable 'subjectProp' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/core/impl/DefaultAlgoEnvironment.cpp:553:25: style: Variable 'prop' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/core/impl/PlastnAlgoConfig.cpp:124:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ENUM_PLASTN [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/PlastnAlgoConfig.cpp:309:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_INDEX_FILTER_SEED [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/PlastnAlgoConfig.cpp:387:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_MAX_HIT_PER_QUERY [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/ScoreMatrix.cpp:52:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _matrix [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/ScoreMatrix.cpp:72:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _matrix [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/ScoreMatrix.cpp:246:100: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NCBI [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/core/impl/ScoreMatrix.cpp:51:19: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/core/impl/ScoreMatrix.cpp:52:15: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/core/impl/ScoreMatrix.cpp:56:23: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/common/AbstractHitIterator.cpp:54:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _splitIterators [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/common/AbstractHitIterator.cpp:77:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _splitIterators [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/common/AbstractHitIterator.cpp:155:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _splitIterators [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/common/AbstractPipeHitIterator.cpp:60:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sourceIterator [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/common/AbstractPipeHitIterator.cpp:86:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sourceIterator [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/common/AbstractPipeHitIterator.cpp:135:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sourceIterator [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/common/AbstractPipeHitIterator.cpp:138:19: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/gap/CompositionHitIterator.cpp:121:5: error: There is an unknown macro here somewhere. Configuration is required. If HIT_STATS is a macro then please configure it. [unknownMacro]
plast_source_v2.3.2/src/algo/hits/gap/FullGapHitIterator.cpp:140:5: error: There is an unknown macro here somewhere. Configuration is required. If HIT_STATS is a macro then please configure it. [unknownMacro]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIterator.cpp:129:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable smallGapBandLength [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIterator.cpp:166:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable smallGapBandLength [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIterator.cpp:239:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable smallGapBandLength [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIterator.cpp:163:9: style: The scope of the variable 'score_gap_col' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIterator.cpp:164:9: style: The scope of the variable 'score_gap_row' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIterator.cpp:165:9: style: The scope of the variable 'next_score' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIterator.cpp:139:13: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:165:5: error: There is an unknown macro here somewhere. Configuration is required. If HIT_STATS is a macro then please configure it. [unknownMacro]
plast_source_v2.3.2/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp:130:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ITER_ON_GOING [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/hsp/HspExtensionCmd.cpp:135:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ITER_ON_GOING [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/hsp/HspExtensionCmd.cpp:185:43: style: Variable 'info' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:132:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:198:93: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Entry [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:426:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _match [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:503:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _match [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:198:16: style: Condition 'maxNb1<nb1' is always true [knownConditionTrueFalse]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:184:21: note: Assignment 'maxNb1=0', assigned value is 0
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:198:16: note: Condition 'maxNb1<nb1' is always true
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:199:16: style: Condition 'maxNb2<nb2' is always true [knownConditionTrueFalse]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:185:21: note: Assignment 'maxNb2=0', assigned value is 0
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:199:16: note: Condition 'maxNb2<nb2' is always true
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:198:51: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:199:51: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:241:59: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:294:59: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:339:38: style: The scope of the variable 's2' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:345:38: style: The scope of the variable 'threshold' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:465:27: style: Variable 'score' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:541:27: style: Variable 'score' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:62:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _indexDb1 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:91:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _indexDb1 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:135:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:181:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:223:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isLocalDone [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:251:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isGlobalDone [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:415:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbOccurMaxDb [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:246:30: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:436:35: style: Variable 'current' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIterator.cpp:311:25: style: Variable 'lastIdx' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/hits/seed/SeedHitIteratorCached.cpp:154:9: error: There is an unknown macro here somewhere. Configuration is required. If HIT_STATS is a macro then please configure it. [unknownMacro]
plast_source_v2.3.2/src/algo/hits/ungap/UngapExtendHitIterator.cpp:105:5: error: There is an unknown macro here somewhere. Configuration is required. If HIT_STATS is a macro then please configure it. [unknownMacro]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:96:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ungapNeighbourLength [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:86:13: style: The scope of the variable 'loop1' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:87:13: style: The scope of the variable 'loop2' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:89:12: style: The scope of the variable 'score' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:90:12: style: The scope of the variable 'scoreMax' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:86:19: style: Variable 'loop1' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:87:19: style: Variable 'loop2' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:89:21: style: Variable 'score' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIterator.cpp:90:21: style: Variable 'scoreMax' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp:145:5: error: There is an unknown macro here somewhere. Configuration is required. If HIT_STATS is a macro then please configure it. [unknownMacro]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp:107:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp:111:20: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp:113:11: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp:129:23: warning: Potentially invalid type conversion in old-style C cast, clarify/fix with C++ cast [dangerousTypeCast]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:114:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_STATS_MSG2 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:129:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lambda [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:146:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lambda [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:193:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable matrixKind [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:292:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:311:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:331:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _seqInfoMap [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:347:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:551:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lambda [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:96:27: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:352:17: style: The scope of the variable 'cutoffs' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:354:17: style: The scope of the variable 'eff_searchsp' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:96:16: style: Variable 'current' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:352:37: style: Variable 'cutoffs' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:354:37: style: Variable 'eff_searchsp' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/stats/impl/Statistics.cpp:355:37: style: Variable 'evalue' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:175:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable openGapCost [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:250:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable penalty [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:283:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BLAST_KARLIN_LAMBDA0_DEFAULT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:344:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BLAST_KARLIN_LAMBDA_ACCURACY_DEFAULT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:484:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BLAST_KARLIN_K_SUMLIMIT_DEFAULT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:617:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_STATS_MSG2 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:579:12: style: Expression 'exp(x) - 1' can be replaced by 'expm1(x)' to avoid loss of precision. [unpreciseMathCall]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:488:4: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:414:21: style: The scope of the variable 'first' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:414:28: style: The scope of the variable 'last' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:421:18: style: The scope of the variable 'score_avg' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:433:25: style: The scope of the variable 'ptr1' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:433:32: style: The scope of the variable 'ptr2' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:433:39: style: The scope of the variable 'ptr1e' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:364:10: style: Variable 'probs' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:494:63: style: Variable 'oldsum2' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsPlastn.cpp:529:13: style: Variable 'oldsum2' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:99:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _parameters [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:144:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable matrixKind [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:229:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable db_length [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:289:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lambda [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:97:27: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:114:39: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:115:39: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:285:15: style: The scope of the variable 'c' can be reduced. [variableScope]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:97:16: style: Variable 'current' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:162:23: style: Variable 'found' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/algo/stats/impl/StatisticsSpouge.cpp:193:23: style: Variable 'found' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/core/impl/AbstractAlignmentContainer.cpp:47:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/AbstractAlignmentContainer.cpp:60:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/Alignment.cpp:87:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable QUERY [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/AlignmentContainerFactory.cpp:108:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBJECT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/AlignmentContainerFactory.cpp:170:25: style: Expression is always false because 'else if' condition matches previous condition at line 166. [multiCondition]
plast_source_v2.3.2/src/alignment/core/impl/AlignmentContainerFactory.cpp:171:25: style: Expression is always false because 'else if' condition matches previous condition at line 167. [multiCondition]
plast_source_v2.3.2/src/alignment/core/impl/AlignmentContainerFactory.cpp:172:25: style: Expression is always false because 'else if' condition matches previous condition at line 168. [multiCondition]
plast_source_v2.3.2/src/alignment/core/impl/AlignmentContainerFactory.cpp:82:37: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/AlignmentContainerFactory.cpp:199:101: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/AlignmentContainerFactory.cpp:205:97: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:101:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:130:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:178:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbSeqLevel1 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:241:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:385:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:447:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBJECT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:464:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:428:38: style:inconclusive: Technically the member function 'alignment::core::impl::SortAlignmentsFunctor::operator()' can be const. [functionConst]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:434:32: style:inconclusive: Technically the member function 'alignment::core::impl::SortHitsFunctor::operator()' can be const. [functionConst]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:71:51: warning: Either the condition 'containerLevel2' is redundant or there is possible null pointer dereference: containerLevel2. [nullPointerRedundantCheck]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:82:13: note: Assuming that condition 'containerLevel2' is not redundant
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:71:51: note: Null pointer dereference
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:71:89: warning: Either the condition 'containerLevel2' is redundant or there is possible null pointer dereference: containerLevel2. [nullPointerRedundantCheck]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:82:13: note: Assuming that condition 'containerLevel2' is not redundant
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:71:89: note: Null pointer dereference
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:181:52: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:244:28: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:245:28: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:302:10: style: The scope of the variable 'foundIncludedAlign' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:302:29: style: Variable 'foundIncludedAlign' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:65:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:71:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:216:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:221:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:322:10: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:389:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:400:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:484:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:492:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:506:97: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:520:103: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:533:123: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:550:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:556:95: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:56:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _diagonalDivisor [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:105:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _HspList [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:145:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:267:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:316:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _firstRetrieve [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:366:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _HspListSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:401:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _diagonalNumber [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:80:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:184:24: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:276:14: style: Variable 'gl' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:374:27: style: Variable 'gl' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:438:43: style: Parameter 'first' can be declared as pointer to const. However it seems that 'HspSortCallback' is a callback function, if 'first' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:478:19: note: You might need to cast the function pointer here
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:438:43: note: Parameter 'first' can be declared as pointer to const
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:438:70: style: Parameter 'second' can be declared as pointer to const. However it seems that 'HspSortCallback' is a callback function, if 'second' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:478:19: note: You might need to cast the function pointer here
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:438:70: note: Parameter 'second' can be declared as pointer to const
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:111:30: style: Variable 'gl_next' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:394:22: style: Variable 'prev' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:395:22: style: Variable 'current' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/core/impl/HspContainer.cpp:460:14: style: Variable 'hsp' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/core/impl/ReaderAlignmentContainer.cpp:75:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/ReaderAlignmentContainer.cpp:77:110: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/ReaderAlignmentContainer.cpp:85:113: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:56:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _DIVDIAG [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:91:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _listGaplessAlign [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:151:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable QUERY [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:302:75: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LISTGAP [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:70:25: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:123:36: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:302:24: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/core/impl/UngapAlignmentContainer.cpp:98:30: style: Variable 'gl_next' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:96:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _filtersMap [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:94:97: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp:116:101: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterFactory.cpp:62:18: error: va_list 'ap' was opened but not closed by va_end(). [va_end_missing]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterOperator.cpp:165:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _reg [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterOperator.cpp:185:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _reg [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterOperator.cpp:94:14: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterOperator.cpp:94:60: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterOperator.cpp:116:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterOperator.cpp:142:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterXML.cpp:75:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable binary [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterXML.cpp:215:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isReadingValue [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/filter/impl/AlignmentFilterXML.cpp:117:104: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp:60:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sort_cbk [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp:92:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _shiftDivisor [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp:148:16: style: Local variable 'k' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp:78:12: note: Shadowed declaration
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp:148:16: note: Shadow variable
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp:138:41: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp:150:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:90:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable refParts [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:110:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable QUERY [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:146:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable QUERY [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:172:12: style: The scope of the variable 'bestOverlap' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:172:24: style: Variable 'bestOverlap' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:175:43: style: Variable 'itDelete' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:107:82: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:177:78: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:182:42: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentOverlapCmd.cpp:200:82: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:63:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _matrix_H [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:80:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _matrix_H [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:107:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _band [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:350:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBJECT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:427:66: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSEED [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:501:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _band [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:374:11: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:377:18: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:101:9: style: The scope of the variable 's' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:101:19: style: The scope of the variable 'd' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:102:10: style: The scope of the variable 'j1' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:102:13: style: The scope of the variable 'j2' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:193:17: style: The scope of the variable 'f0' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:371:9: style: The scope of the variable 'i' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitter.cpp:193:20: style: Variable 'f0' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:66:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _DefaultAlignSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:86:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _vector_H [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:107:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _MaxAlignSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:169:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _band [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:421:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _band [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:111:21: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:112:21: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:113:21: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:301:44: style: Variable 'E0' is reassigned a value before the old one has been used. [redundantAssignment]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:271:12: note: E0 is assigned
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:301:44: note: E0 is overwritten
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:165:9: style: The scope of the variable 's' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:235:17: style: The scope of the variable 'f1' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:235:20: style: Variable 'f1' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:341:16: style: Variable 'H1' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/AlignmentSplitterBanded.cpp:384:16: style: Variable 'H1' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:70:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _Xdropoff [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:109:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _extendGapCost [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:153:19: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:253:27: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:169:19: style: Redundant initialization for 'best_score'. The initialized value is overwritten before it is read. [redundantInitialization]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:130:28: note: best_score is initialized
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:169:19: note: best_score is overwritten
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:127:14: style: The scope of the variable 'score_gap_row' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:128:14: style: The scope of the variable 'score_gap_col' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:129:14: style: The scope of the variable 'next_score' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:122:29: style: Variable 'b_ptr' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:124:29: style: Variable 'matrix_row' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:127:28: style: Variable 'score_gap_row' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:128:28: style: Variable 'score_gap_col' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlign.cpp:129:28: style: Variable 'next_score' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:103:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _score_array [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:119:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _score_array [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:147:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _extendGapCost [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:509:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GapStateArrayStruct [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:103:20: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:105:29: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:106:29: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:203:24: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:253:34: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:254:34: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:368:28: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:509:17: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:510:30: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:531:33: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:542:20: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:543:33: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:230:19: style: Redundant initialization for 'best_score'. The initialized value is overwritten before it is read. [redundantInitialization]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:167:28: note: best_score is initialized
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:230:19: note: best_score is overwritten
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:171:16: style: The scope of the variable 'orig_b_index' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:500:26: style: The scope of the variable 'last' can be reduced. [variableScope]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:160:29: style: Variable 'b_ptr' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:161:29: style: Variable 'matrix_row' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:171:39: style: Variable 'orig_b_index' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:499:33: style: Variable 'var' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp:500:33: style: Variable 'last' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/visitors/impl/CompareContainerVisitor.cpp:58:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _commonSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/FilterContainerVisitor.cpp:49:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _filter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/FilterContainerVisitor.cpp:56:50: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp:48:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _ref [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp:64:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentHitsNb [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp:82:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentHitsNb [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:169:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentQuery [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:191:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentSubject [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:213:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentSubject [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:85:32: style:inconclusive: Either there is a missing 'override', or the member function 'alignment::visitors::impl::QueryLevel::getSequence' can be const. [functionConst]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:115:32: style:inconclusive: Either there is a missing 'override', or the member function 'alignment::visitors::impl::SubjectLevel::getSequence' can be const. [functionConst]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:72:5: style: Class 'QueryLevel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:103:5: style: Class 'SubjectLevel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:138:15: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:171:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:191:23: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:193:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:213:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:47:45: style: Local variable 'it' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:62:34: note: Shadowed declaration
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:47:45: note: Shadow variable
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:76:47: style: Local variable 'it' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:91:36: note: Shadowed declaration
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:76:47: note: Shadow variable
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:47:86: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/visitors/impl/ModelBuilderVisitor.cpp:76:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp:66:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _kind [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp:112:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nucleotidDb [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:178:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable QUERY [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:408:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:460:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _queryId [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:477:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _newPos [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:546:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable beg [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:288:9: warning:inconclusive: The buffer 'commentBuffer' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:359:10: style: The member function 'alignment::visitors::impl::AlignmentContainerBuilderStream::setContainer' can be static. [functionStatic]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:88:5: style: Class 'AlignmentContainerBuilderStream' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:549:23: style: Local variable 'range' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:517:17: note: Shadowed declaration
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:549:23: note: Shadow variable
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:581:28: style: Variable 'l' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:285:11: style: Variable 'c' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/alignment/visitors/impl/QueryReorderVisitor.cpp:590:89: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/alignment/visitors/impl/ReverseStrandVisitor.cpp:63:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _strand [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp:58:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbRemoved [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/SortContainerVisitor.cpp:46:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sort_cbk [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/SortContainerVisitor.cpp:64:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sort_cbk [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp:43:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp:56:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp:75:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp:93:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable comment [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp:142:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/XmlOutputVisitor.cpp:75:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _properties [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/XmlOutputVisitor.cpp:88:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbSubject [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/XmlOutputVisitor.cpp:117:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbQuery [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/XmlOutputVisitor.cpp:194:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbSubject [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/XmlOutputVisitor.cpp:226:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbAlign [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/XmlOutputVisitor.cpp:269:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/alignment/visitors/impl/XmlOutputVisitor.cpp:135:22: performance: Ineffective call of function 'substr' because a prefix of the string is assigned to itself. Use resize() or pop_back() instead. [uselessCallsSubstr]
plast_source_v2.3.2/src/database/impl/AbstractSequenceIterator.cpp:49:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sequenceBuilder [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BasicSequenceBuilder.cpp:49:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BasicSequenceBuilder.cpp:78:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable comment [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BasicSequenceBuilder.cpp:96:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable comment [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BasicSequenceBuilder.cpp:114:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sourceEncoding [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BasicSequenceBuilder.cpp:218:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BasicSequenceBuilder.cpp:188:14: style: The scope of the variable 's' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:79:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseSeqId [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:97:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_FILE_BLAST_MSG3 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:191:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_FILE_BLAST_MSG3 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:240:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_FILE_BLAST_MSG3 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:282:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parser [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:337:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parser [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:372:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _removeLastCar [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:399:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseInteger [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:423:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseVisibleString [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:442:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseInteger [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:461:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseInteger [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:481:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseVisibleString [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:502:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseVisibleString [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:521:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseVisibleString [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:541:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseInteger [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:560:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseVisibleString [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:579:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseVisibleString [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:599:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable parseObjectId [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:70:20: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:72:20: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:173:14: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:235:14: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:295:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:331:14: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:349:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:359:14: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:374:14: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:379:23: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:399:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:400:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:401:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:402:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:403:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:404:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:405:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:423:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:424:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:442:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:443:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:461:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:462:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:463:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:481:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:482:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:483:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:484:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:502:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:503:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:521:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:522:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:523:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:541:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:542:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:560:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:561:6: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:579:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:580:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:581:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:599:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:600:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:601:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:602:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:603:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:604:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:605:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:606:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:607:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:608:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:609:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:610:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:611:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:612:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:613:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:614:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:615:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:616:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:617:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:618:7: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:164:10: style: The scope of the variable 'i' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:164:13: style: The scope of the variable 's' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:228:7: style: The scope of the variable 'tempValue' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:230:16: style: The scope of the variable 'c' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbAsn1HeaderDecoder.cpp:68:14: style: Unused variable: tempComment [unusedVariable]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:57:75: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ENUM_TYPE_UNKNOWN [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:105:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _totalSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:178:75: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ENUM_TYPE_UNKNOWN [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:58:15: style: Redundant initialization for 'databaseType'. The initialized value is overwritten before it is read. [redundantInitialization]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:57:53: note: databaseType is initialized
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:58:15: note: databaseType is overwritten
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:88:12: style: The scope of the variable 'currentIdx' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:177:9: style: The scope of the variable 'path' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:88:23: style: Variable 'currentIdx' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:177:14: style: Variable 'path' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:115:72: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/BlastdbDatabaseQuickReader.cpp:154:90: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/BlastdbFileIndexReader.cpp:54:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _filenameWithoutExt [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbFileIndexReader.cpp:79:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _fileindex [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbFileIndexReader.cpp:96:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:70:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _dbType [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:105:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentSequenceFile [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:128:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isDone [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:187:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _filesIterator [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:236:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _eof [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:348:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _firstOffset [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:388:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _commentMaxSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:298:25: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:315:26: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:319:26: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:392:18: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:386:16: style: The scope of the variable 'byteLengthDefIfupper128' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:460:18: performance: Ineffective call of function 'substr' because a prefix of the string is assigned to itself. Use resize() or pop_back() instead. [uselessCallsSubstr]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:386:40: style: Variable 'byteLengthDefIfupper128' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:100:97: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/BlastdbSequenceIterator.cpp:111:118: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/BufferedCachedSequenceDatabase.cpp:83:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isBuilt [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:91:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbSequences [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:121:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _cache [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:152:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _filterLowComplexity [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:292:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _firstIdx [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:367:76: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_DATABASE_MSG1 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:416:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable comments [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:472:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _direction [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:486:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:542:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _id [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:608:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentDataCapacity [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:624:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentSequencesCapacity [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:649:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentSequencesCapacity [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:671:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:691:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ALPHABET_NUCLEOTID [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:732:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:349:13: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:272:9: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:391:9: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:503:9: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:535:16: style: The scope of the variable 'last' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:199:16: portability: Shifting signed 32-bit value by 31 bits is implementation-defined behaviour [shiftTooManyBitsSigned]
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:196:16: note: Assuming that condition 'b<32' is not redundant
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:199:16: note: Shift
plast_source_v2.3.2/src/database/impl/BufferedSequenceDatabase.cpp:535:22: style: Variable 'last' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:63:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sequencesTotalNb [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:109:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sequencesOffsets [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:138:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sequencesOffsets [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:167:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _children [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:195:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _databasesOffsets [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:224:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _children [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:51:95: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:84:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:242:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:264:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:307:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:324:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:342:89: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:359:89: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/CompositeSequenceDatabase.cpp:375:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/database/impl/DefaultAlphabet.cpp:135:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _kind [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/DefaultAlphabet.cpp:161:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _kind [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/DefaultAlphabet.cpp:182:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CODE_X [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/DefaultAlphabet.cpp:302:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ASCII [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/DefaultAlphabet.cpp:168:13: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:100:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _totalSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:200:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable u_int64_t [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:307:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _actualUri [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:373:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable u_int64_t [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:398:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _totalSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:39:61: error: Memory leak: dirc [memleak]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:201:39: error: Resource leak: file [resourceLeak]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:207:58: error: Resource leak: file [resourceLeak]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:93:12: style: The scope of the variable 'currentIdx' can be reduced. [variableScope]
plast_source_v2.3.2/src/database/impl/FastaDatabaseQuickReader.cpp:93:23: style: Variable 'currentIdx' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/database/impl/FastaSequenceIterator.cpp:57:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSEED [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaSequenceIterator.cpp:88:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isDone [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaSequenceIterator.cpp:111:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isDone [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaSequenceIterator.cpp:149:48: warning: Potentially invalid type conversion in old-style C cast, clarify/fix with C++ cast [dangerousTypeCast]
plast_source_v2.3.2/src/database/impl/FastaSequenceOutput.cpp:89:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _iterator [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/FastaSequenceOutput.cpp:119:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReadingFrameSequenceDatabase.cpp:78:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _frame [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReadingFrameSequenceIterator.cpp:77:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _alphabet [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReadingFrameSequenceIterator.cpp:111:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nucleotidIter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReadingFrameSequenceIterator.cpp:128:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nucleotidIter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReadingFrameSequenceIterator.cpp:152:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CHECK_BLOCK_BEGIN [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReadingFrameSequenceIterator.cpp:262:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable A [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReverseStrandSequenceIterator.cpp:47:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _alphabet [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReverseStrandSequenceIterator.cpp:81:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nucleotidIter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReverseStrandSequenceIterator.cpp:98:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nucleotidIter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/ReverseStrandSequenceIterator.cpp:128:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable comment [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/Sequence.cpp:27:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable database [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/SequenceTokenizer.cpp:58:79: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable encoding [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:47:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSEED [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:84:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SUBSEED [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:121:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentIdx [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:139:32: warning: Potentially invalid type conversion in old-style C cast, clarify/fix with C++ cast [dangerousTypeCast]
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:62:39: style: Local variable 'i' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:56:17: note: Shadowed declaration
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:62:39: note: Shadow variable
plast_source_v2.3.2/src/database/impl/StringSequenceIterator.cpp:129:17: style: Variable 'currentStr' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:44:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:57:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:72:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _command [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:134:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbUnits [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:107:35: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:153:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:169:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:176:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/CommandDispatcher.cpp:216:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/ConfigFileProperties.cpp:20:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _initfile [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/ConfigFileProperties.cpp:40:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/DirectoryIterator.cpp:77:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _entriesIterator [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/DirectoryIterator.cpp:130:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _dirOnly [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/FileLineIterator.cpp:67:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _line [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/FileLineIterator.cpp:85:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _line [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/FileLineIterator.cpp:107:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _cummulatedFilesLength [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/FileLineIterator.cpp:164:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _filesIterator [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/FileLineIterator.cpp:88:73: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Observer.cpp:64:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _observers [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Observer.cpp:82:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _observers [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Observer.cpp:109:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _observers [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Observer.cpp:129:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _observers [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Observer.cpp:89:101: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:440:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _properties [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:458:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _stream [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:475:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _stream [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:491:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _stream [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:518:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _deltaDepth [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:544:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _deltaDepth [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:670:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _shouldIndent [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:690:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _stream [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:715:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:728:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _fileToClose [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:741:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:265:27: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:49:10: style: Either there is a missing 'override', or the member function 'dp::impl::InsertionVisitor::visitBegin' can be static. [functionStatic]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:50:10: style: Either there is a missing 'override', or the member function 'dp::impl::InsertionVisitor::visitEnd' can be static. [functionStatic]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:296:9: style: Class 'XmlObserver' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:46:67: performance: Function parameter 'keys' should be passed by const reference. [passedByValue]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:374:22: style: Variable 'current' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:313:31: style: Variable 'e2' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:323:30: style: Variable 'e3' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:221:22: style: Unused variable: nokeys [unusedVariable]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:92:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:110:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:130:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:239:101: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:364:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:384:14: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:384:23: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:396:84: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:417:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/Property.cpp:435:88: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/designpattern/impl/SystemCommand.cpp:46:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _buffer [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/SystemCommand.cpp:63:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _buffer [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/SystemCommand.cpp:78:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _tmpFilename [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/SystemCommand.cpp:116:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _outputfile [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/SystemCommand.cpp:138:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _status [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/TokenizerIterator.cpp:46:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _text [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/TokenizerIterator.cpp:59:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _text [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/TokenizerIterator.cpp:76:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _str [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/TokenizerIterator.cpp:92:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _loop [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/TokenizerIterator.cpp:114:18: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/designpattern/impl/TokenizerIterator.cpp:131:17: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/designpattern/impl/WrapperIterator.cpp:45:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _length [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/WrapperIterator.cpp:70:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentIndex [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/WrapperIterator.cpp:84:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentIndex [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/WrapperIterator.cpp:100:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentIndex [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/XmlReader.cpp:68:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _is [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/designpattern/impl/XmlReader.cpp:287:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/AbstractDatabaseIndex.cpp:49:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _maxSeedsNumber [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/AbstractDatabaseIndex.cpp:107:9: style: Consider using std::find_if algorithm instead of a raw loop. [useStlAlgorithm]
plast_source_v2.3.2/src/index/impl/AbstractDatabaseIndex.cpp:67:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/index/impl/AbstractDatabaseIndex.cpp:104:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:47:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:83:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAD_SEED_HASH_CODE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:149:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _sequenceOffset [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:196:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:222:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAD_SEED_HASH_CODE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:252:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAD_SEED_HASH_CODE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:285:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAD_SEED_HASH_CODE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:304:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAD_SEED_HASH_CODE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:327:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _index [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:363:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAD_SEED_HASH_CODE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:424:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _offsets [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:491:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _neighbourTotalSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:504:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _table [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:518:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _offsets [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:543:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable begin [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:578:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _table [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:689:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _range [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:232:9: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:201:22: style: Local variable 'result' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:190:18: note: Shadowed declaration
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:201:22: note: Shadow variable
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:386:43: style: Local variable 'it' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:376:51: note: Shadowed declaration
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:386:43: note: Shadow variable
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:85:17: style: Variable 'word' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:193:13: style: Variable 'buffer' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:401:21: style: Variable 'nbOccurs' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:406:22: style: Variable 'nbOccurs' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:346:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:376:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/index/impl/DatabaseIndex.cpp:386:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:65:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _hashTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:78:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _hashTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:168:84: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _hashTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/retrievall.h:48:18: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/retrievall.h:49:19: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:97:19: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:101:22: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:108:42: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:168:41: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseIndexHash.cpp:107:42: warning: Potentially invalid type conversion in old-style C cast, clarify/fix with C++ cast [dangerousTypeCast]
plast_source_v2.3.2/src/index/impl/retrievall.h:43:21: style: The scope of the variable 'tmp' can be reduced. [variableScope]
plast_source_v2.3.2/src/index/impl/retrievall.h:147:58: style: Parameter 'bits_table' can be declared as pointer to const [constParameterPointer]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:75:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:127:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _counter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:199:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _maxSeedsNumber [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:259:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_INDEXATION_MSG1 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:274:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_INDEXATION_MSG1 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:291:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _index [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:330:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:399:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndex.cpp:85:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:291:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:351:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _counter [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:372:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _occurrencesSize [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:404:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isBuilt [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:542:74: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PLUS [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:561:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _maxSeedsNumber [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:578:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _maxSeedsNumber [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:128:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NB_MAX_MMER [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:244:5: style: Struct 'SeedsFunctor' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:251:5: style: Struct 'CountFunctor' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:263:5: style: Struct 'FillFunctor' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:306:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:134:21: style: The scope of the variable 'bitshiftKmerMmer' can be reduced. [variableScope]
plast_source_v2.3.2/src/index/impl/DatabaseNucleotidIndexOptim.cpp:109:65: style: Parameter 'nbGot' can be declared as reference to const [constParameterReference]
plast_source_v2.3.2/src/index/impl/retrievall.c:189:437: error: The code contains unhandled character(s) (character code=194). Neither unicode nor extended ascii is supported. [unhandledChar]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:67:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isRunning [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:99:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isRunning [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:145:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_INFO_BARGRAPH [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:223:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_INFO_STATS_FORMAT [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:264:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isFinished [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:408:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _isRunning [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:176:27: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:237:14: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:241:9: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:237:14: note: Found duplicate branches for 'if' and 'else'.
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:107:91: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/launcher/core/PlastCmd.cpp:116:91: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/launcher/jni/Wrapper.hpp:54:21: style:inconclusive: Technically the member function 'Wrapper::String::c_str' can be const. [functionConst]
plast_source_v2.3.2/src/launcher/jni/Wrapper.hpp:34:5: style: Class 'Wrapper' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:75:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HspInfo [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:59:9: style: Condition 'isOk' is always true [knownConditionTrueFalse]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:51:22: note: Assignment 'isOk=true', assigned value is 1
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:59:9: note: Condition 'isOk' is always true
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:61:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:42:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:43:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:44:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:45:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:46:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 5 names different: declaration '<unnamed>' definition 'querySeq'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:47:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 6 names different: declaration '<unnamed>' definition 'hitSeq'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:101:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Hit [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:59:9: style: Condition 'isOk' is always true [knownConditionTrueFalse]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:50:22: note: Assignment 'isOk=true', assigned value is 1
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:59:9: note: Condition 'isOk' is always true
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:61:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:43:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:44:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:45:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:46:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:115:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Properties [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:180:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbAlignments [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:263:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_FORCE_QUERY_ORDERING [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:383:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Properties [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:291:85: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:330:5: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:135:10: style: Either there is a missing 'override', or the member function 'RequestLink::dump' can be static. [functionStatic]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:260:21: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:322:21: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:351:21: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:375:25: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:248:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:249:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:250:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:251:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:314:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:315:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:316:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:317:14: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 4 names different: declaration '<unnamed>' definition 'detach'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:342:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_isRunning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:343:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_isRunning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:344:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_isRunning' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:367:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_getExecInfo' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:368:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_getExecInfo' argument 2 names different: declaration '<unnamed>' definition 'self'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:369:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_getExecInfo' argument 3 names different: declaration '<unnamed>' definition 'execInfoPeer'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:101:38: style: Variable 'e2' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp:50:5: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp:45:16: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestController_enableLibrary' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp:46:16: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestController_enableLibrary' argument 2 names different: declaration '<unnamed>' definition 'clazz'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp:47:16: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestController_enableLibrary' argument 3 names different: declaration '<unnamed>' definition 'enable'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:64:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PLAST_VERSION [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:132:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Properties [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:285:9: style: Either there is a missing 'override', or the member function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest::::UpdatePropsVisitor::visitBegin' can be static. [functionStatic]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:286:9: style: Either there is a missing 'override', or the member function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest::::UpdatePropsVisitor::visitEnd' can be static. [functionStatic]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:125:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_initIDs' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:126:12: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_initIDs' argument 2 names different: declaration '<unnamed>' definition 'clazz'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:127:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_initIDs' argument 3 names different: declaration '<unnamed>' definition 'code'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:200:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:201:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest' argument 2 names different: declaration '<unnamed>' definition 'self'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:202:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest' argument 3 names different: declaration '<unnamed>' definition 'javaProps'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:101:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable QueryResult [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:59:9: style: Condition 'isOk' is always true [knownConditionTrueFalse]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:50:22: note: Assignment 'isOk=true', assigned value is 1
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:59:9: note: Condition 'isOk' is always true
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:61:16: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:43:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:44:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:45:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:46:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]
plast_source_v2.3.2/src/launcher/observers/AbstractProgressionObserver.cpp:82:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ITER_STARTING [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AbstractProgressionObserver.cpp:176:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _percentThreshold [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AbstractProgressionObserver.cpp:138:16: style: Condition 'e3!=0' is always true [knownConditionTrueFalse]
plast_source_v2.3.2/src/launcher/observers/AbstractProgressionObserver.cpp:201:5: portability: %ld in format string (no. 1) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/launcher/observers/AbstractProgressionObserver.cpp:201:5: portability: %ld in format string (no. 2) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/launcher/observers/AlgoExecutionObserver.cpp:58:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:67:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _t0 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:89:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _visitor [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:127:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _theMap [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:260:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PLAST_NAME [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:263:18: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:271:18: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:350:16: style: The scope of the variable 'prop' can be reduced. [variableScope]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:350:21: style: Variable 'prop' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/launcher/observers/AlgoHitsResultObserver.cpp:198:82: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:83:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _visitor [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:93:52: warning: Either the condition 'algo' is redundant or there is possible null pointer dereference: algo. [nullPointerRedundantCheck]
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:104:13: note: Assuming that condition 'algo' is not redundant
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:93:52: note: Null pointer dereference
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:109:50: style: Variable 'kind' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:110:50: style: Variable 'kind' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:111:50: style: Variable 'kind' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:112:50: style: Variable 'kind' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/launcher/observers/AlgoResultObserver.cpp:113:50: style: Variable 'kind' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:48:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _nbChar [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:65:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _output [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:84:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _output [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:103:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _percentThreshold [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:83:5: warning: memset() called to fill 0 bytes. [memsetZeroBytes]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:151:5: portability: %ld in format string (no. 1) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:151:5: portability: %ld in format string (no. 2) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:151:5: portability: %ld in format string (no. 3) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/launcher/observers/BargraphObserver.cpp:52:15: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:80:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _globalPercentage [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:124:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:150:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ungapAlignsNb [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:193:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:222:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:235:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _file [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:254:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentAlgo [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/launcher/observers/FileProgressionObserver.cpp:162:13: portability: %ld in format string (no. 1) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/misc/api/CompleteSubjectDatabaseStats.cpp:17:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_COMPLETE_SUBJECT_DB_SIZE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/ObsfucatedString.hpp:60:17: style:inconclusive: Technically the member function 'misc::impl::ObsfucatedString::toString' can be const. [functionConst]
plast_source_v2.3.2/src/misc/impl/ObsfucatedString.hpp:60:17: performance: Function 'toString()' should return member 's' by const reference. [returnByReference]
plast_source_v2.3.2/src/misc/impl/ObsfucatedString.cpp:49:10: style: Local variable 'seed' shadows outer variable [shadowVariable]
plast_source_v2.3.2/src/misc/impl/ObsfucatedString.hpp:83:17: note: Shadowed declaration
plast_source_v2.3.2/src/misc/impl/ObsfucatedString.cpp:49:10: note: Shadow variable
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:48:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _proceed [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:102:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _argc [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:265:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _currentArg [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:314:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_OPTIONS_MSG3 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:331:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_OPTIONS_MSG4 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:347:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_OPTIONS_MSG5 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:361:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_OPTIONS_MSG8 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:493:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_OPTIONS_MSG6 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:526:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MSG_OPTIONS_MSG7 [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:211:19: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:461:21: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:156:24: style: Redundant initialization for 'res'. The initialized value is overwritten before it is read. [redundantInitialization]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:149:29: note: res is initialized
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:156:24: note: res is overwritten
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:107:11: style: The scope of the variable 'exclude' can be reduced. [variableScope]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:156:24: style: Variable 'res' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:64:84: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:247:94: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:282:91: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:329:78: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:345:82: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:375:81: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:399:96: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:424:104: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:453:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:474:87: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:481:105: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:514:79: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:518:112: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/misc/impl/OptionsParser.cpp:544:99: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/os/impl/DefaultOsFactory.cpp:86:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _thread [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/AbstractSeedIterator.cpp:56:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/AbstractSeedIterator.cpp:72:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _synchro [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/AbstractSeedIterator.cpp:85:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/AbstractSeedIterator.cpp:119:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _hasNextValidMethod [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/AbstractSeedIterator.cpp:112:30: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/seed/impl/AbstractSeedModel.cpp:44:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _alphabet [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/AbstractSeedModel.cpp:83:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable size [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/BasicSeedModel.cpp:43:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _seedsMaxNumber [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/BasicSeedModel.cpp:143:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/BasicSeedModel.cpp:213:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _firstIdx [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/BasicSeedModel.cpp:245:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _firstIdx [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/BasicSeedModel.cpp:286:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _specificModel [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/BasicSeedModel.cpp:302:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _specificModel [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/BasicSeedModel.cpp:316:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:68:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:92:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:142:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _alphabet [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:165:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:193:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _convertTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:241:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _span [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:276:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _allSeedsTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:355:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _equivalenceTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:373:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:456:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:519:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _allSeedsTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:559:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _allSeedsTable [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:604:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _specificModel [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:617:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _specificModel [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:631:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _seedsIdx [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:243:9: portability: %ld in format string (no. 1) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:248:13: portability: %ld in format string (no. 1) requires 'long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_sint]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:145:25: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:146:63: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:278:26: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:281:30: style: C-style pointer casting [cstyleCast]
plast_source_v2.3.2/src/seed/impl/SubSeedModel.cpp:255:25: style: Variable 'currentContainer' can be declared as reference to const [constVariableReference]
plast_source_v2.3.2/src/seg/impl/DustMasker.cpp:93:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable end [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/DustMasker.hpp:115:14: style: The member function 'DustMasker::triplets::add_triplet_info' can be static. [functionStatic]
plast_source_v2.3.2/src/seg/impl/DustMasker.hpp:116:14: style: The member function 'DustMasker::triplets::rem_triplet_info' can be static. [functionStatic]
plast_source_v2.3.2/src/seg/impl/DustMasker.hpp:42:5: style: Class 'DustMasker' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
plast_source_v2.3.2/src/seg/impl/DustMasker.cpp:81:74: style:inconclusive: Function 'save_masked_regions' argument 2 names different: declaration 'w' definition 'wstart'. [funcArgNamesDifferent]
plast_source_v2.3.2/src/seg/impl/DustMasker.hpp:57:72: note: Function 'save_masked_regions' argument 2 names different: declaration 'w' definition 'wstart'.
plast_source_v2.3.2/src/seg/impl/DustMasker.cpp:81:74: note: Function 'save_masked_regions' argument 2 names different: declaration 'w' definition 'wstart'.
plast_source_v2.3.2/src/seg/impl/DustMasker.cpp:116:75: style:inconclusive: Function 'compute' argument 3 names different: declaration 'regions' definition 'res'. [funcArgNamesDifferent]
plast_source_v2.3.2/src/seg/impl/DustMasker.hpp:49:78: note: Function 'compute' argument 3 names different: declaration 'regions' definition 'res'.
plast_source_v2.3.2/src/seg/impl/DustMasker.cpp:116:75: note: Function 'compute' argument 3 names different: declaration 'regions' definition 'res'.
plast_source_v2.3.2/src/seg/impl/DustMasker.cpp:42:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
plast_source_v2.3.2/src/seg/impl/dust.c:35:9: style: struct member 'REGION::score' is never used. [unusedStructMember]
plast_source_v2.3.2/src/seg/impl/dust.c:249:10: style: Variable 'from' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/seg/impl/dust.c:250:8: style: Variable 'to' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/seg/impl/genwin.c:49:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Sequence [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/genwin.c:172:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/genwin.c:317:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/genwin.c:87:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:87:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:90:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:90:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:94:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:94:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:95:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:95:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:96:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:96:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:97:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:97:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:101:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:101:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:102:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:102:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:109:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:109:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:116:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:116:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:117:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:117:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:118:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:118:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:122:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:122:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:123:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:123:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:124:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:124:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:125:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:125:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:126:5: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:126:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:261:9: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:128:14: note: Calling function 'stateon', 1st argument 'win' value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:261:9: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:264:9: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:128:14: note: Calling function 'stateon', 1st argument 'win' value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:264:9: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:268:18: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:128:14: note: Calling function 'stateon', 1st argument 'win' value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:268:18: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:270:9: warning: If memory allocation fails, then there is a possible null pointer dereference: win [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:128:14: note: Calling function 'stateon', 1st argument 'win' value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:268:40: note: Assuming condition is false
plast_source_v2.3.2/src/seg/impl/genwin.c:270:9: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/genwin.c:42:15: style: Variable 'cp' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/genwin.c:42:20: style: Variable 'cp0' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/genwin.c:222:26: style: Variable 'seqmax' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/genwin.c:244:28: style: Parameter 's1' can be declared as pointer to const. However it seems that 'state_cmp' is a callback function, if 's1' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
plast_source_v2.3.2/src/seg/impl/genwin.c:275:90: note: You might need to cast the function pointer here
plast_source_v2.3.2/src/seg/impl/genwin.c:244:28: note: Parameter 's1' can be declared as pointer to const
plast_source_v2.3.2/src/seg/impl/genwin.c:244:37: style: Parameter 's2' can be declared as pointer to const. However it seems that 'state_cmp' is a callback function, if 's2' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
plast_source_v2.3.2/src/seg/impl/genwin.c:275:90: note: You might need to cast the function pointer here
plast_source_v2.3.2/src/seg/impl/genwin.c:244:37: note: Parameter 's2' can be declared as pointer to const
plast_source_v2.3.2/src/seg/impl/genwin.c:359:19: style: Variable 'svmax' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/genwin.c:440:20: style: Variable 'stringmax' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/genwin.c:457:20: style: Variable 'stringmax' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/seg.c:54:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Sequence [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/seg.c:159:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Segment [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/seg.c:241:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/seg.c:318:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/seg.c:378:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lnfac [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/seg.c:403:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lnfac [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/seg.c:56:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:56:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:57:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:57:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:58:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:58:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:59:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:59:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:60:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:60:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:61:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:61:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:62:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:62:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:63:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:63:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:64:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:64:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:65:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:65:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:66:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:66:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:67:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:67:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:68:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:68:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:69:5: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:69:5: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:120:12: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:86:13: note: Calling function 'segseq', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:117:10: note: Assuming condition is false
plast_source_v2.3.2/src/seg/impl/seg.c:120:12: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:160:13: warning: If memory allocation fails, then there is a possible null pointer dereference: seg [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:159:44: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:159:19: note: Assignment 'seg=(struct Segment*)malloc(sizeof(struct Segment))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:160:13: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:161:13: warning: If memory allocation fails, then there is a possible null pointer dereference: seg [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:159:44: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:159:19: note: Assignment 'seg=(struct Segment*)malloc(sizeof(struct Segment))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:161:13: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:162:13: warning: If memory allocation fails, then there is a possible null pointer dereference: seg [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:159:44: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:159:19: note: Assignment 'seg=(struct Segment*)malloc(sizeof(struct Segment))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:162:13: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:191:16: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:86:13: note: Calling function 'segseq', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:116:16: note: Calling function 'seqent', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:191:16: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:196:27: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:86:13: note: Calling function 'segseq', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:116:16: note: Calling function 'seqent', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:191:15: note: Assuming condition is false
plast_source_v2.3.2/src/seg/impl/seg.c:196:27: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:198:17: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:86:13: note: Calling function 'segseq', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:116:16: note: Calling function 'seqent', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:191:15: note: Assuming condition is false
plast_source_v2.3.2/src/seg/impl/seg.c:198:17: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:200:9: warning: If memory allocation fails, then there is a possible null pointer dereference: H [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:196:26: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:196:9: note: Assignment 'H=(double*)malloc(seq->length*sizeof(double))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:200:9: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:215:9: warning: If memory allocation fails, then there is a possible null pointer dereference: H [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:196:26: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:196:9: note: Assignment 'H=(double*)malloc(seq->length*sizeof(double))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:211:30: note: Assuming condition is false
plast_source_v2.3.2/src/seg/impl/seg.c:215:9: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:504:14: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:90:17: note: Calling function 'singreport', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:504:14: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:505:26: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:90:17: note: Calling function 'singreport', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:505:26: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:506:19: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:90:17: note: Calling function 'singreport', 1st argument 'seq' value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:506:19: note: Null pointer dereference
plast_source_v2.3.2/src/seg/impl/seg.c:231:31: style: Parameter 'win' can be declared as pointer to const [constParameterPointer]
plast_source_v2.3.2/src/seg/impl/seg.c:233:26: style: Variable 'seqmax' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/seg.c:254:39: style: Parameter 'H' can be declared as pointer to const [constParameterPointer]
plast_source_v2.3.2/src/seg/impl/seg.c:275:39: style: Parameter 'H' can be declared as pointer to const [constParameterPointer]
plast_source_v2.3.2/src/seg/impl/seg.c:373:21: style: Parameter 'sv' can be declared as pointer to const [constParameterPointer]
plast_source_v2.3.2/src/seg/impl/seg.c:396:20: style: Parameter 'sv' can be declared as pointer to const [constParameterPointer]
plast_source_v2.3.2/src/seg/impl/seg.c:450:34: style: Parameter 'seq' can be declared as pointer to const [constParameterPointer]
plast_source_v2.3.2/src/seg/impl/seg.c:500:20: style: Variable 'proseqmax' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/seg.c:501:21: style: Variable 'seg' can be declared as pointer to const [constVariablePointer]
plast_source_v2.3.2/src/seg/impl/seg.c:505:15: style: Variable 'proseqmax' is assigned a value that is never used. [unreadVariable]
plast_source_v2.3.2/src/tools/PlastCmd.cpp:117:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STR_OPTION_HELP [valueFlowBailoutIncompleteVar]
plast_source_v2.3.2/src/seg/impl/genwin.c:261:9: warning: If memory allocation fails, then there is a possible null pointer dereference: win [ctunullpointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/genwin.c:83:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/genwin.c:83:11: note: Assignment 'win=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/genwin.c:128:13: note: Calling function stateon, 1st argument is null
plast_source_v2.3.2/src/seg/impl/genwin.c:261:9: note: Dereferencing argument win that is null
plast_source_v2.3.2/src/seg/impl/seg.c:191:16: warning: Null pointer dereference: seq [ctunullpointer]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:86:12: note: Calling function segseq, 1st argument is null
plast_source_v2.3.2/src/seg/impl/seg.c:116:9: note: Calling function seqent, 1st argument is null
plast_source_v2.3.2/src/seg/impl/seg.c:191:16: note: Dereferencing argument seq that is null
plast_source_v2.3.2/src/seg/impl/seg.c:504:14: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [ctunullpointerOutOfMemory]
plast_source_v2.3.2/src/seg/impl/seg.c:54:37: note: Assuming allocation function fails
plast_source_v2.3.2/src/seg/impl/seg.c:54:11: note: Assignment 'seq=(struct Sequence*)malloc(sizeof(struct Sequence))', assigned value is 0
plast_source_v2.3.2/src/seg/impl/seg.c:90:16: note: Calling function singreport, 1st argument is null
plast_source_v2.3.2/src/seg/impl/seg.c:504:14: note: Dereferencing argument seq that is null
diff:
head plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:339:38: style: The scope of the variable 's2' can be reduced. [variableScope]
head plast_source_v2.3.2/src/algo/hits/hsp/HspGeneratorCmd.cpp:345:38: style: The scope of the variable 'threshold' can be reduced. [variableScope]
head plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:71:51: warning: Either the condition 'containerLevel2' is redundant or there is possible null pointer dereference: containerLevel2. [nullPointerRedundantCheck]
     plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:82:13: note: Assuming that condition 'containerLevel2' is not redundant
     plast_source_v2.3.2/src/alignment/core/impl/BasicAlignmentContainer.cpp:71:51: note: Null pointer dereference
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:42:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:43:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:44:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:45:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:46:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 5 names different: declaration '<unnamed>' definition 'querySeq'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp:47:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Hit_retrieveNext' argument 6 names different: declaration '<unnamed>' definition 'hitSeq'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:43:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:44:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:45:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp:46:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_QueryResult_retrieveNext' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:248:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:249:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:250:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:251:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_run' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:314:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:315:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:316:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:317:14: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_cancel' argument 4 names different: declaration '<unnamed>' definition 'detach'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:342:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_isRunning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:343:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_isRunning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:344:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_isRunning' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:367:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_getExecInfo' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:368:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_getExecInfo' argument 2 names different: declaration '<unnamed>' definition 'self'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp:369:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_Request_getExecInfo' argument 3 names different: declaration '<unnamed>' definition 'execInfoPeer'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp:45:16: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestController_enableLibrary' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp:46:16: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestController_enableLibrary' argument 2 names different: declaration '<unnamed>' definition 'clazz'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp:47:16: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestController_enableLibrary' argument 3 names different: declaration '<unnamed>' definition 'enable'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:125:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_initIDs' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:126:12: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_initIDs' argument 2 names different: declaration '<unnamed>' definition 'clazz'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:127:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_initIDs' argument 3 names different: declaration '<unnamed>' definition 'code'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:200:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:201:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest' argument 2 names different: declaration '<unnamed>' definition 'self'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:202:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest' argument 3 names different: declaration '<unnamed>' definition 'javaProps'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:43:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:44:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:45:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 3 names different: declaration '<unnamed>' definition 'peer'. [funcArgNamesDifferentUnnamed]
head plast_source_v2.3.2/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp:46:13: style:inconclusive: Function 'Java_org_inria_genscale_dbscan_impl_plast_RequestResult_retrieveNext' argument 4 names different: declaration '<unnamed>' definition 'factory'. [funcArgNamesDifferentUnnamed]


DONE