2024-04-11 08:05
ftp://ftp.de.debian.org/debian/pool/main/p/pizzly/pizzly_0.37.3+ds.orig.tar.xz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning -D__GNUC__ --platform=unix64 -j1
platform: Linux-5.15.0-102-generic-x86_64-with-glibc2.35
python: 3.10.12
client-version: 1.3.55
compiler: g++ (Ubuntu 12.3.0-1ubuntu1~22.04) 12.3.0
cppcheck: head 2.13.0
head-info: 83d4e31 (2024-04-11 00:04:28 +0200)
count: 34 29
elapsed-time: 10.3 22.4
head-timing-info:

old-timing-info:

head results:
pizzly-0.37.3/GeneModel.hpp:247:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
pizzly-0.37.3/GeneModel.hpp:294:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
pizzly-0.37.3/FilterFusions.hpp:490:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable strand [valueFlowBailoutIncompleteVar]
pizzly-0.37.3/FilterFusions.hpp:710:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stop [valueFlowBailoutIncompleteVar]
pizzly-0.37.3/main.cpp:17:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STRING [valueFlowBailoutIncompleteVar]
pizzly-0.37.3/main.cpp:83:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PARSE_OK [valueFlowBailoutIncompleteVar]
pizzly-0.37.3/GeneModel.hpp:13:14: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
pizzly-0.37.3/common.h:19:3: warning: Member variable 'ProgramOptions::k' is not initialized in the constructor. [uninitMemberVar]
pizzly-0.37.3/common.h:19:3: warning: Member variable 'ProgramOptions::alignScore' is not initialized in the constructor. [uninitMemberVar]
pizzly-0.37.3/common.h:17:7: style:inconclusive: Member variable 'ProgramOptions::insertSize' is in the wrong place in the initializer list. [initializerList]
pizzly-0.37.3/common.h:19:36: note: Member variable 'ProgramOptions::insertSize' is in the wrong place in the initializer list.
pizzly-0.37.3/common.h:17:7: note: Member variable 'ProgramOptions::insertSize' is in the wrong place in the initializer list.
pizzly-0.37.3/common.h:14:8: style:inconclusive: Member variable 'ProgramOptions::ignoreProtein' is in the wrong place in the initializer list. [initializerList]
pizzly-0.37.3/common.h:19:53: note: Member variable 'ProgramOptions::ignoreProtein' is in the wrong place in the initializer list.
pizzly-0.37.3/common.h:14:8: note: Member variable 'ProgramOptions::ignoreProtein' is in the wrong place in the initializer list.
pizzly-0.37.3/FilterFusions.hpp:877:17: style: The scope of the variable 't_count' can be reduced. [variableScope]
pizzly-0.37.3/FilterFusions.hpp:51:10: style: Local variable 'm' shadows outer variable [shadowVariable]
pizzly-0.37.3/FilterFusions.hpp:47:15: note: Shadowed declaration
pizzly-0.37.3/FilterFusions.hpp:51:10: note: Shadow variable
pizzly-0.37.3/FilterFusions.hpp:184:68: performance: Function parameter 'glist' should be passed by const reference. [passedByValue]
pizzly-0.37.3/FilterFusions.hpp:361:61: performance: Function parameter 'trp' should be passed by const reference. [passedByValue]
pizzly-0.37.3/FilterFusions.hpp:785:70: performance: Function parameter 'v' should be passed by const reference. [passedByValue]
pizzly-0.37.3/FilterFusions.hpp:785:85: performance: Function parameter 't' should be passed by const reference. [passedByValue]
pizzly-0.37.3/GeneModel.hpp:112:11: style: Variable 'trxmodel' can be declared as reference to const [constVariableReference]
pizzly-0.37.3/GeneModel.hpp:120:16: style: Variable 'exon' can be declared as reference to const [constVariableReference]
pizzly-0.37.3/GeneModel.hpp:144:40: style: Parameter 'transcriptome' can be declared as reference to const [constParameterReference]
pizzly-0.37.3/GeneModel.hpp:158:16: style: Variable 'trlist' can be declared as reference to const [constVariableReference]
pizzly-0.37.3/GeneModel.hpp:171:16: style: Variable 'trlist' can be declared as reference to const [constVariableReference]
pizzly-0.37.3/FilterFusions.hpp:176:14: style: Variable 'g' can be declared as reference to const [constVariableReference]
pizzly-0.37.3/GeneModel.hpp:262:26: warning:inconclusive: Access of moved variable 'seq'. [accessMoved]
pizzly-0.37.3/GeneModel.hpp:267:66: note: Calling std::move(seq)
pizzly-0.37.3/GeneModel.hpp:262:26: note: Access of moved variable 'seq'.
pizzly-0.37.3/GeneModel.hpp:266:20: warning:inconclusive: Access of moved variable 'seq'. [accessMoved]
pizzly-0.37.3/GeneModel.hpp:267:66: note: Calling std::move(seq)
pizzly-0.37.3/GeneModel.hpp:266:20: note: Access of moved variable 'seq'.
pizzly-0.37.3/GeneModel.hpp:267:76: warning:inconclusive: Access of moved variable 'seq'. [accessMoved]
pizzly-0.37.3/GeneModel.hpp:267:66: note: Calling std::move(seq)
pizzly-0.37.3/GeneModel.hpp:267:76: note: Access of moved variable 'seq'.
pizzly-0.37.3/FilterFusions.hpp:177:22: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
pizzly-0.37.3/FilterFusions.hpp:366:5: style: Consider using std::all_of or std::none_of algorithm instead of a raw loop. [useStlAlgorithm]
pizzly-0.37.3/FilterFusions.hpp:786:5: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
pizzly-0.37.3/main.cpp:113:13: style: Consider using std::count_if algorithm instead of a raw loop. [useStlAlgorithm]
pizzly-0.37.3/main.cpp:119:17: style: Consider using std::count_if algorithm instead of a raw loop. [useStlAlgorithm]
pizzly-0.37.3/FilterFusions.hpp:205:28: error: Uninitialized struct member: m.strand [uninitStructMember]
pizzly-0.37.3/GeneModel.hpp:117:13: style: Variable 'fw' is assigned a value that is never used. [unreadVariable]
pizzly-0.37.3/FilterFusions.hpp:47:15: style: Unused variable: m [unusedVariable]
diff:
head pizzly-0.37.3/FilterFusions.hpp:490:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable strand [valueFlowBailoutIncompleteVar]
head pizzly-0.37.3/FilterFusions.hpp:710:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stop [valueFlowBailoutIncompleteVar]
head pizzly-0.37.3/GeneModel.hpp:294:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
head pizzly-0.37.3/main.cpp:17:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STRING [valueFlowBailoutIncompleteVar]
head pizzly-0.37.3/main.cpp:83:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PARSE_OK [valueFlowBailoutIncompleteVar]


DONE