2025-05-06 06:44
ftp://ftp.de.debian.org/debian/pool/main/m/mira/mira_4.9.6.orig.tar.bz2
cppcheck-options: --library=posix --library=gnu --library=bsd --library=boost --library=openmp --library=zlib  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j3
platform: Linux-6.8.0-1022-oracle-aarch64-with-glibc2.39
python: 3.12.3
client-version: 1.3.67
compiler: g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
cppcheck: head 2.17.0
head-info: 581f101 (2025-05-05 21:13:30 +0200)
count: 2583 2553
elapsed-time: 15.5 15.8
head-timing-info:

old-timing-info:

head results:
mira-4.9.6/src/errorhandling/errorhandling.C:51:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/errorhandling/errorhandling.C:70:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/errorhandling/errorhandling.C:183:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/errorhandling/errorhandling.C:237:3: performance: Variable 'fl_flowtype' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/errorhandling/errorhandling.C:238:3: performance: Variable 'fl_data' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/errorhandling/errorhandling.C:243:3: performance: Variable 'fl_flowtype' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/errorhandling/errorhandling.C:244:3: performance: Variable 'fl_data' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/errorhandling/errorhandling.C:177:14: style:inconclusive: Technically the member function 'Notify::handleError' can be const. [functionConst]
mira-4.9.6/src/errorhandling/errorhandling.H:79:8: note: Technically the member function 'Notify::handleError' can be const.
mira-4.9.6/src/errorhandling/errorhandling.C:177:14: note: Technically the member function 'Notify::handleError' can be const.
mira-4.9.6/src/errorhandling/errorhandling.C:273:12: style:inconclusive: Technically the member function 'Flow::exitWhenUndefined' can be const. [functionConst]
mira-4.9.6/src/errorhandling/errorhandling.H:105:8: note: Technically the member function 'Flow::exitWhenUndefined' can be const.
mira-4.9.6/src/errorhandling/errorhandling.C:273:12: note: Technically the member function 'Flow::exitWhenUndefined' can be const.
mira-4.9.6/src/errorhandling/errorhandling.H:100:3: style: Class 'Flow' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
mira-4.9.6/src/errorhandling/errorhandling.C:41:22: style:inconclusive: Function 'Notify' argument 1 names different: declaration 'gravity' definition '_gravity'. [funcArgNamesDifferent]
mira-4.9.6/src/errorhandling/errorhandling.H:67:16: note: Function 'Notify' argument 1 names different: declaration 'gravity' definition '_gravity'.
mira-4.9.6/src/errorhandling/errorhandling.C:41:22: note: Function 'Notify' argument 1 names different: declaration 'gravity' definition '_gravity'.
mira-4.9.6/src/errorhandling/errorhandling.C:58:22: style:inconclusive: Function 'Notify' argument 1 names different: declaration 'gravity' definition '_gravity'. [funcArgNamesDifferent]
mira-4.9.6/src/errorhandling/errorhandling.H:68:16: note: Function 'Notify' argument 1 names different: declaration 'gravity' definition '_gravity'.
mira-4.9.6/src/errorhandling/errorhandling.C:58:22: note: Function 'Notify' argument 1 names different: declaration 'gravity' definition '_gravity'.
mira-4.9.6/src/io/annotationmappings.C:109:7: error: syntax error [syntaxError]
mira-4.9.6/src/caf/caf.C:72:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:130:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_piptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:155:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:162:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable strict_seq_vector [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:183:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_lexer [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:200:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_type [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:253:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable reReadToken [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:277:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:323:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_ccallbackfunc [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:361:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_piptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:390:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:427:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_lexer [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:508:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:525:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:552:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable token_identifier [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:608:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable verbose [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:627:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable token_number [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:663:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable reReadToken [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:675:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_readname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:684:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_scf_file [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:691:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_asped_date [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:698:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_base_caller [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:705:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_clone [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:712:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_sequencing_vector [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:720:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_stolen [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:727:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_template [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:740:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable token_number [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:755:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_state [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:765:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable token_dye_primer [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:779:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_primer [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:787:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:796:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_ligation [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:805:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_readname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:823:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:932:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:962:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:995:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_readname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:1033:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_length [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:1064:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:1163:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:1232:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_token [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:1296:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable verbose [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:1619:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_clist [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:1671:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CAF_type [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/exp.H:82:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/exp.C:106:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/exp.C:266:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/exp.C:300:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/exp.C:315:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/exp.C:637:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/caf/caf.C:293:17: warning: Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
mira-4.9.6/src/caf/caf.C:292:9: note: outer condition: !cafin.eof()
mira-4.9.6/src/caf/caf.C:293:17: note: opposite inner condition: cafin.eof()
mira-4.9.6/src/caf/caf.C:1278:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/caf/caf.C:1585:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/caf/caf.C:1692:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/caf/caf.C:388:10: style: The scope of the variable 'numseqsloaded' can be reduced. [variableScope]
mira-4.9.6/src/caf/caf.C:521:15: style: The scope of the variable 'name' can be reduced. [variableScope]
mira-4.9.6/src/caf/caf.C:546:9: style: The scope of the variable 'name' can be reduced. [variableScope]
mira-4.9.6/src/caf/caf.C:1649:18: style: Variable 'de' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/caf/caf.C:388:23: style: Variable 'numseqsloaded' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/io/exp.H:67:5: performance: Variable 'from' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/io/exp.H:68:5: performance: Variable 'to' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/io/exp.C:249:12: performance:inconclusive: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/io/exp.H:178:10: note: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/exp.C:249:12: note: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/exp.C:633:11: style:inconclusive: Technically the member function 'EXP::dump' can be const. [functionConst]
mira-4.9.6/src/io/exp.H:189:8: note: Technically the member function 'EXP::dump' can be const.
mira-4.9.6/src/io/exp.C:633:11: note: Technically the member function 'EXP::dump' can be const.
mira-4.9.6/src/io/exp.C:94:67: style:inconclusive: Function 'extractGenBankKeyValueFromComment' argument 1 names different: declaration 'whatkex' definition 'whatkey'. [funcArgNamesDifferent]
mira-4.9.6/src/io/exp.H:75:62: note: Function 'extractGenBankKeyValueFromComment' argument 1 names different: declaration 'whatkex' definition 'whatkey'.
mira-4.9.6/src/io/exp.C:94:67: note: Function 'extractGenBankKeyValueFromComment' argument 1 names different: declaration 'whatkex' definition 'whatkey'.
mira-4.9.6/src/io/exp.C:99:96: style:inconclusive: Function 'extractGenBankKeyValueFromComment' argument 2 names different: declaration 'whatkex' definition 'whatkey'. [funcArgNamesDifferent]
mira-4.9.6/src/io/exp.H:78:27: note: Function 'extractGenBankKeyValueFromComment' argument 2 names different: declaration 'whatkex' definition 'whatkey'.
mira-4.9.6/src/io/exp.C:99:96: note: Function 'extractGenBankKeyValueFromComment' argument 2 names different: declaration 'whatkex' definition 'whatkey'.
mira-4.9.6/src/io/exp.H:93:78: style: Parameter 'total_freecap' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/io/exp.H:93:102: style: Parameter 'total_lostba' can be declared as reference to const [constParameterReference]
caf_flexer.cc:1656:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_init [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2244:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yyin [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2274:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_state_buf [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2286:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2338:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2475:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2506:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2530:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2571:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2648:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2671:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2695:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_n_chars [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2741:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2759:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable errno [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2802:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2820:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2844:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2865:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2906:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack_ptr [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2930:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack_ptr [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2938:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2947:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:116:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:219:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FA_fastaseqname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:343:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:407:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FA_qualseqname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:483:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FA_fastaseqname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:546:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:572:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:607:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FA_fastaseqname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fasta.C:631:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FA_qualseqname [valueFlowBailoutIncompleteVar]
exp_flexer.cc:751:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_init [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1369:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yyin [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1399:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_state_buf [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1411:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1463:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1600:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1631:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1655:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1692:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1765:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1788:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1812:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_n_chars [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1858:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1876:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable errno [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1919:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1937:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1961:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:1982:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:2023:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack_ptr [valueFlowBailoutIncompleteVar]
exp_flexer.cc:2047:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack_ptr [valueFlowBailoutIncompleteVar]
exp_flexer.cc:2055:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack [valueFlowBailoutIncompleteVar]
exp_flexer.cc:2064:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
caf_flexer.cc:2392:27: warning: Possible null pointer dereference: b [nullPointer]
caf_flexer.cc:2389:24: note: Assignment 'b=(yy_buffer_stack)?(yy_buffer_stack)[yy_buffer_stack_top]:NULL', assigned value is 0
caf_flexer.cc:2392:27: note: Null pointer dereference
caf_flexer.cc:2394:9: warning: Possible null pointer dereference: b [nullPointer]
caf_flexer.cc:2389:24: note: Assignment 'b=(yy_buffer_stack)?(yy_buffer_stack)[yy_buffer_stack_top]:NULL', assigned value is 0
caf_flexer.cc:2394:9: note: Null pointer dereference
caf_flexer.cc:2403:20: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2405:17: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2426:3: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2454:41: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2454:61: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2627:7: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2711:7: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2720:17: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2745:11: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2747:10: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2872:24: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2891:24: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2914:23: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2917:23: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:2917:42: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:3008:27: style: C-style pointer casting [cstyleCast]
caf_flexer.cc:3013:8: style: C-style pointer casting [cstyleCast]
caf_flexer.ll:77:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:84:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:91:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:98:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:104:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:111:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:117:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:124:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:130:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:136:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:143:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:149:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:155:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:161:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:167:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:173:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:179:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:185:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:191:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:197:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:203:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:208:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:214:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:225:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:232:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:238:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:249:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:260:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:271:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:287:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:304:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:314:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:320:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:325:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:330:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:335:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:340:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:345:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:350:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:355:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:360:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:365:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:370:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:375:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:380:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:385:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:401:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
caf_flexer.ll:420:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.cc:1517:27: warning: Possible null pointer dereference: b [nullPointer]
exp_flexer.cc:1514:24: note: Assignment 'b=(yy_buffer_stack)?(yy_buffer_stack)[yy_buffer_stack_top]:NULL', assigned value is 0
exp_flexer.cc:1517:27: note: Null pointer dereference
exp_flexer.cc:1519:9: warning: Possible null pointer dereference: b [nullPointer]
exp_flexer.cc:1514:24: note: Assignment 'b=(yy_buffer_stack)?(yy_buffer_stack)[yy_buffer_stack_top]:NULL', assigned value is 0
exp_flexer.cc:1519:9: note: Null pointer dereference
exp_flexer.cc:1528:20: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1530:17: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1551:3: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1579:41: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1579:61: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1748:7: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1828:7: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1837:17: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1862:11: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1864:10: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:1989:24: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:2008:24: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:2031:23: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:2034:23: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:2034:42: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:2125:27: style: C-style pointer casting [cstyleCast]
exp_flexer.cc:2130:8: style: C-style pointer casting [cstyleCast]
exp_flexer.ll:40:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:45:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:54:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:59:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:64:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:69:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:77:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:88:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:97:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:102:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:107:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:112:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:117:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:128:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:133:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:138:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:148:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:154:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:159:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:169:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:174:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:180:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:185:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:191:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:196:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:201:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:206:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:211:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:216:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:221:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:226:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:231:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:236:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:241:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:246:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:251:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:256:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:261:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:266:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:271:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:276:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:281:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:286:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:291:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:296:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:301:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:306:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:311:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:316:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:321:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:326:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:331:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:336:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:341:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:346:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:351:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:356:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:364:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:369:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:378:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:383:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:388:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:393:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:398:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:403:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:408:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
exp_flexer.ll:413:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
mira-4.9.6/src/io/fasta.C:526:5: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy]
mira-4.9.6/src/io/fasta.C:524:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/io/fasta.C:118:15: style: Redundant initialization for 'tokenstart'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/io/fasta.C:116:20: note: tokenstart is initialized
mira-4.9.6/src/io/fasta.C:118:15: note: tokenstart is overwritten
mira-4.9.6/src/io/fasta.C:124:15: style: Redundant initialization for 'tokenend'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/io/fasta.C:122:20: note: tokenend is initialized
mira-4.9.6/src/io/fasta.C:124:15: note: tokenend is overwritten
mira-4.9.6/src/io/fasta.C:153:13: style: Redundant initialization for 'tokenend'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/io/fasta.C:152:18: note: tokenend is initialized
mira-4.9.6/src/io/fasta.C:153:13: note: tokenend is overwritten
mira-4.9.6/src/io/fastq-mira.C:47:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FQ_tracktellg [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:81:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FQ_tracktellg [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:115:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable beg [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:157:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FQ_tracktellg [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:187:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FQ_linecount [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:223:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:261:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:297:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FQ_tracktellg [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/fastq-mira.C:173:10: style: Redundant initialization for 'nameend'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/io/fastq-mira.C:172:15: note: nameend is initialized
mira-4.9.6/src/io/fastq-mira.C:173:10: note: nameend is overwritten
mira-4.9.6/src/io/fastq-mira.C:238:14: style: Redundant initialization for 'nameend'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/io/fastq-mira.C:237:19: note: nameend is initialized
mira-4.9.6/src/io/fastq-mira.C:238:14: note: nameend is overwritten
mira-4.9.6/src/io/ncbiinfoxml.C:250:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/phd.C:48:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PHD_name [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/phd.C:87:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/phd.C:114:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/phd.C:143:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PHD_name [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:111:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:122:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:127:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_newallocsgetthisnocheckflag [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:142:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_allhot [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:153:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_alloccounter [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:165:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:174:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_mostfatalerroroccurred [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:196:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:298:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:393:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:413:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:510:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:528:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_readytouse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:547:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MOC_innewcount [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/memorc/memorc.C:225:7: portability: %llu in format string (no. 1) requires 'unsigned long long' but the argument type is 'size_t {aka unsigned long}'. [invalidPrintfArgType_uint]
mira-4.9.6/src/io/ncbiinfoxml.C:65:19: performance:inconclusive: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/io/ncbiinfoxml.H:106:8: note: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/ncbiinfoxml.C:65:19: note: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/memorc/memorc.C:239:21: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/memorc/memorc.C:268:14: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/memorc/memorc.C:400:80: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/memorc/memorc.C:197:5: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
mira-4.9.6/src/memorc/memorc.C:199:6: note: Found duplicate branches for 'if' and 'else'.
mira-4.9.6/src/memorc/memorc.C:197:5: note: Found duplicate branches for 'if' and 'else'.
mira-4.9.6/src/memorc/memorc.C:168:3: style: Statements following noreturn function 'abort()' will never be executed. [unreachableCode]
mira-4.9.6/src/io/ncbiinfoxml.C:243:94: style:inconclusive: Function 'readXMLFile' argument 2 names different: declaration 'traceelems' definition 'traces'. [funcArgNamesDifferent]
mira-4.9.6/src/io/ncbiinfoxml.H:125:39: note: Function 'readXMLFile' argument 2 names different: declaration 'traceelems' definition 'traces'.
mira-4.9.6/src/io/ncbiinfoxml.C:243:94: note: Function 'readXMLFile' argument 2 names different: declaration 'traceelems' definition 'traces'.
mira-4.9.6/src/memorc/memorc.C:428:15: style: Variable 'fencecptr' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/memorc/memorc.C:479:15: style: Variable 'fencecptr' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/mira/adsfacts.C:133:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/adsfacts.C:147:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/adsfacts.C:162:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/adsfacts.C:176:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/adsfacts.C:234:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/adsfacts.C:83:54: style:inconclusive: Function 'serialiseIn' argument 1 names different: declaration 'ostr' definition 'istr'. [funcArgNamesDifferent]
mira-4.9.6/src/mira/adsfacts.H:100:35: note: Function 'serialiseIn' argument 1 names different: declaration 'ostr' definition 'istr'.
mira-4.9.6/src/mira/adsfacts.C:83:54: note: Function 'serialiseIn' argument 1 names different: declaration 'ostr' definition 'istr'.
mira-4.9.6/src/mira/adsfacts.C:180:133: style:inconclusive: Function 'publicinit' argument 6 names different: declaration 'totallen' definition 'total_len'. [funcArgNamesDifferent]
mira-4.9.6/src/mira/adsfacts.H:129:14: note: Function 'publicinit' argument 6 names different: declaration 'totallen' definition 'total_len'.
mira-4.9.6/src/mira/adsfacts.C:180:133: note: Function 'publicinit' argument 6 names different: declaration 'totallen' definition 'total_len'.
mira-4.9.6/src/io/scf.C:182:76: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable uint16 [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:232:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTERNAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:708:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable uint32 [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:729:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable uint32 [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:826:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:907:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:919:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:1075:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:1206:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/io/scf.C:1429:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:78:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AL_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:107:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AL_no_solutions [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:138:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AL_tmpads [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:161:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AL_userle [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:206:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AL_valid [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:233:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DYN_validseq [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:292:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AL_mpset_al_min_relscore [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:321:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DYN_matrixcalculated [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:351:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DYN_matrixcalculated [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:426:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DYN_len_seq2 [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:529:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DYN_len_seq2 [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:931:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:942:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DYN_timing_seqcopy [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:960:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/align.C:553:15: style:inconclusive: Boolean expression 'hasn' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
mira-4.9.6/src/mira/align.C:368:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/io/scf.C:47:6: warning: Member variable 'SCF::SCF_tmp_scf2' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/io/scf.C:157:18: warning:inconclusive: Member variable 'SCF::SCF_lastloadedscfname' is not assigned a value in 'SCF::operator='. [operatorEqVarError]
mira-4.9.6/src/io/scf.C:157:18: warning: Member variable 'SCF::SCF_tmp_scf2' is not assigned a value in 'SCF::operator='. [operatorEqVarError]
mira-4.9.6/src/io/scf.C:691:18: performance:inconclusive: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/io/scf.H:250:15: note: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:691:18: note: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:698:18: performance:inconclusive: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/io/scf.H:251:15: note: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:698:18: note: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:712:18: performance:inconclusive: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/io/scf.H:254:15: note: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:712:18: note: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:719:18: performance:inconclusive: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/io/scf.H:255:15: note: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:719:18: note: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/io/scf.C:894:11: style:inconclusive: Technically the member function 'SCF::dumpSample' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:258:8: note: Technically the member function 'SCF::dumpSample' can be const.
mira-4.9.6/src/io/scf.C:894:11: note: Technically the member function 'SCF::dumpSample' can be const.
mira-4.9.6/src/io/scf.C:738:11: style:inconclusive: Technically the member function 'SCF::undelta16' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:259:8: note: Technically the member function 'SCF::undelta16' can be const.
mira-4.9.6/src/io/scf.C:738:11: note: Technically the member function 'SCF::undelta16' can be const.
mira-4.9.6/src/io/scf.C:755:11: style:inconclusive: Technically the member function 'SCF::delta16' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:260:8: note: Technically the member function 'SCF::delta16' can be const.
mira-4.9.6/src/io/scf.C:755:11: note: Technically the member function 'SCF::delta16' can be const.
mira-4.9.6/src/io/scf.C:779:11: style:inconclusive: Technically the member function 'SCF::undelta8' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:261:8: note: Technically the member function 'SCF::undelta8' can be const.
mira-4.9.6/src/io/scf.C:779:11: note: Technically the member function 'SCF::undelta8' can be const.
mira-4.9.6/src/io/scf.C:796:11: style:inconclusive: Technically the member function 'SCF::delta8' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:262:8: note: Technically the member function 'SCF::delta8' can be const.
mira-4.9.6/src/io/scf.C:796:11: note: Technically the member function 'SCF::delta8' can be const.
mira-4.9.6/src/io/scf.C:645:11: style:inconclusive: Technically the member function 'SCF::checkSCFDataOK' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:282:8: note: Technically the member function 'SCF::checkSCFDataOK' can be const.
mira-4.9.6/src/io/scf.C:645:11: note: Technically the member function 'SCF::checkSCFDataOK' can be const.
mira-4.9.6/src/io/scf.C:677:11: style:inconclusive: Technically the member function 'SCF::correctPeakIndices' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:283:8: note: Technically the member function 'SCF::correctPeakIndices' can be const.
mira-4.9.6/src/io/scf.C:677:11: note: Technically the member function 'SCF::correctPeakIndices' can be const.
mira-4.9.6/src/io/scf.C:1373:11: style:inconclusive: Technically the member function 'SCF::transposeAmbiguityCodes' can be const. [functionConst]
mira-4.9.6/src/io/scf.H:284:8: note: Technically the member function 'SCF::transposeAmbiguityCodes' can be const.
mira-4.9.6/src/io/scf.C:1373:11: note: Technically the member function 'SCF::transposeAmbiguityCodes' can be const.
mira-4.9.6/src/io/scf.C:385:20: warning:inconclusive: Logical conjunction always evaluates to false: version < '1' && version > '3'. [incorrectLogicOperator]
mira-4.9.6/src/io/scf.C:293:11: error: Return value of allocation function 'mkstemp' is not stored. [leakReturnValNotUsed]
mira-4.9.6/src/io/scf.C:264:12: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:321:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:378:9: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:379:10: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:410:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:419:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:464:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:465:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:466:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:467:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:471:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:472:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:473:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:474:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:475:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:476:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:477:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:478:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:479:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:501:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:502:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:503:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:504:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:508:21: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:515:12: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:521:12: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:527:12: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:544:14: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:552:14: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:707:27: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:728:30: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:833:7: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:848:7: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:849:8: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:923:8: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:941:14: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:960:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:961:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:962:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:963:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1009:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1010:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1011:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1012:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1023:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1026:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1027:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1028:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1029:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1030:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1037:18: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1049:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:1056:16: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/io/scf.C:381:12: style: Redundant initialization for 'version'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/io/scf.C:373:15: note: version is initialized
mira-4.9.6/src/io/scf.C:381:12: note: version is overwritten
mira-4.9.6/src/io/scf.C:585:5: style: Variable 'tmp_scf_samples' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:575:29: note: tmp_scf_samples is assigned 'new uint16[new_num_samples]' here.
mira-4.9.6/src/io/scf.C:585:5: note: Variable 'tmp_scf_samples' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:595:5: style: Variable 'tmp_scf_samples' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:585:20: note: tmp_scf_samples is assigned 'new uint16[new_num_samples]' here.
mira-4.9.6/src/io/scf.C:595:5: note: Variable 'tmp_scf_samples' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:605:5: style: Variable 'tmp_scf_samples' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:595:20: note: tmp_scf_samples is assigned 'new uint16[new_num_samples]' here.
mira-4.9.6/src/io/scf.C:605:5: note: Variable 'tmp_scf_samples' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:1111:5: style: Variable 'tmpsamples' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:1106:24: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
mira-4.9.6/src/io/scf.C:1111:5: note: Variable 'tmpsamples' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:1116:5: style: Variable 'tmpsamples' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:1106:24: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
mira-4.9.6/src/io/scf.C:1109:19: note: Assignment 'SCF_samples_A=tmpsamples', assigned value is symbolic=new uint16[samples_to_copy]
mira-4.9.6/src/io/scf.C:1106:24: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
mira-4.9.6/src/io/scf.C:1109:18: note: SCF_samples_A is assigned 'tmpsamples' here.
mira-4.9.6/src/io/scf.C:1111:16: note: Assignment 'tmpsamples=new uint16[samples_to_copy]', assigned value is symbolic=new uint16[samples_to_copy]
mira-4.9.6/src/io/scf.C:1111:15: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
mira-4.9.6/src/io/scf.C:1116:5: note: Variable 'tmpsamples' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:1121:5: style: Variable 'tmpsamples' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:1116:15: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
mira-4.9.6/src/io/scf.C:1121:5: note: Variable 'tmpsamples' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:1137:5: style: Variable 'tmpprob' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:1132:20: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
mira-4.9.6/src/io/scf.C:1137:5: note: Variable 'tmpprob' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:1142:5: style: Variable 'tmpprob' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:1132:20: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
mira-4.9.6/src/io/scf.C:1135:16: note: Assignment 'SCF_prob_A=tmpprob', assigned value is symbolic=new uint8[bases_to_copy]
mira-4.9.6/src/io/scf.C:1132:20: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
mira-4.9.6/src/io/scf.C:1135:15: note: SCF_prob_A is assigned 'tmpprob' here.
mira-4.9.6/src/io/scf.C:1137:14: note: Assignment 'tmpprob=new uint8[bases_to_copy]', assigned value is symbolic=new uint8[bases_to_copy]
mira-4.9.6/src/io/scf.C:1137:12: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
mira-4.9.6/src/io/scf.C:1142:5: note: Variable 'tmpprob' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:1147:5: style: Variable 'tmpprob' is assigned an expression that holds the same value. [redundantAssignment]
mira-4.9.6/src/io/scf.C:1142:12: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
mira-4.9.6/src/io/scf.C:1147:5: note: Variable 'tmpprob' is assigned an expression that holds the same value.
mira-4.9.6/src/io/scf.C:672:3: style:inconclusive: Statements following 'return' will never be executed. [unreachableCode]
mira-4.9.6/src/io/scf.C:222:29: style:inconclusive: Function 'load' argument 1 names different: declaration 'filename' definition 'givenname'. [funcArgNamesDifferent]
mira-4.9.6/src/io/scf.H:276:26: note: Function 'load' argument 1 names different: declaration 'filename' definition 'givenname'.
mira-4.9.6/src/io/scf.C:222:29: note: Function 'load' argument 1 names different: declaration 'filename' definition 'givenname'.
mira-4.9.6/src/io/scf.C:1200:77: style:inconclusive: Function 'setBases' argument 2 names different: declaration 'newprobabilities' definition 'newprobs'. [funcArgNamesDifferent]
mira-4.9.6/src/io/scf.H:296:30: note: Function 'setBases' argument 2 names different: declaration 'newprobabilities' definition 'newprobs'.
mira-4.9.6/src/io/scf.C:1200:77: note: Function 'setBases' argument 2 names different: declaration 'newprobabilities' definition 'newprobs'.
mira-4.9.6/src/io/scf.C:1200:115: style:inconclusive: Function 'setBases' argument 3 names different: declaration 'newpeakpositions' definition 'newpeakindex'. [funcArgNamesDifferent]
mira-4.9.6/src/io/scf.H:297:31: note: Function 'setBases' argument 3 names different: declaration 'newpeakpositions' definition 'newpeakindex'.
mira-4.9.6/src/io/scf.C:1200:115: note: Function 'setBases' argument 3 names different: declaration 'newpeakpositions' definition 'newpeakindex'.
mira-4.9.6/src/io/scf.C:376:11: style: Variable 'ptr' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/io/scf.C:830:9: style: Variable 'ptr' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/mira/assembly.H:1027:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:80:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_TEXT [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:110:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mi_extended_log [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:158:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REA_defaulttag_CRMr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:212:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:320:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:531:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:574:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable dir_tmp [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:648:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:708:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:764:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:890:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1038:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable dir_checkpoint [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1082:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INSTALL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1651:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable as_bphseries [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1667:89: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable chkpt_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1746:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable dir_checkpoint [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1864:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1876:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1887:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1900:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1928:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1945:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:1965:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2050:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable as_tmpf_wellconnected [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2086:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable as_tmpf_wellconnected [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2126:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable as_tmpf_banned_overlaps [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2168:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable as_tmpf_banned_overlaps [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2225:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2269:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2394:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2462:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REA_tagentry_idSRMr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2624:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2745:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable as_tmpf_signal_findpossibleoverlaps [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:2873:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:3416:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTERNAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.C:3447:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable THISFUNC [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:86:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1265:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1305:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1337:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1501:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1639:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1750:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1770:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MT_tagsrcentry_idMIRA [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1799:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1833:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1988:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable sortComparatorByRIDUp [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:2049:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_buildcontigs.C:909:50: style:inconclusive: Boolean expression 'newreptmarked' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
mira-4.9.6/src/mira/assembly_buildcontigs.C:909:75: style:inconclusive: Boolean expression 'contignotok' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1468:10: style: Condition 'shouldmovesmallclusterstodebris' is always true [knownConditionTrueFalse]
mira-4.9.6/src/mira/assembly_buildcontigs.C:2002:28: style: Condition 'runI->rid1!=orpid' is always true [knownConditionTrueFalse]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1996:18: note: Assuming that condition 'runI->rid1!=orpid' is not redundant
mira-4.9.6/src/mira/assembly_buildcontigs.C:2002:28: note: Condition 'runI->rid1!=orpid' is always true
mira-4.9.6/src/mira/assembly_buildcontigs.C:620:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_buildcontigs.C:255:8: style: The scope of the variable 'maykillintermediatesinmglets' can be reduced. [variableScope]
mira-4.9.6/src/mira/assembly_buildcontigs.C:638:7: style: The scope of the variable 'wasedited' can be reduced. [variableScope]
mira-4.9.6/src/mira/assembly_buildcontigs.C:627:15: style: Variable 'cre' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_buildcontigs.C:945:17: style: Variable 'rid' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1392:18: style: Variable 'rid' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1937:13: style: Variable 'rid' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_buildcontigs.C:2121:18: style: Variable 'pcre' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_buildcontigs.C:188:15: style: Consider using std::accumulate algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_buildcontigs.C:1312:40: style: Consider using std::count_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_buildcontigs.C:241:22: style: Unused variable: tmp_ids_in_contig [unusedVariable]
mira-4.9.6/src/mira/assembly_info.C:41:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ASI_conf_large_mincontigsize [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_info.C:121:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ASI_numreads_total [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_info.C:173:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEQTYPE_END [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_info.C:190:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEQTYPE_END [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_info.C:359:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ASI_nameslargecontigs [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_info.C:372:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable miraversion [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_info.C:470:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ASI_avgcoverage [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.H:235:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1234:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ADSF_delta [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1316:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ADSF_total_len [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1530:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1720:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ADSF_total_len [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1910:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1944:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1971:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:1998:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2022:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ADSF_id2 [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2039:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2152:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2215:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ADSF_delta [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2430:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2479:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTERNAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2492:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTERNAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ads.C:2504:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTERNAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_info.C:324:18: style: Variable 'cse' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_info.C:359:14: style: Variable 'lce' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_io.C:320:0: error: #error "Check if new seqtype needs same workaround." [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_io.C:320:2: error: #error "Check if new seqtype needs same workaround." [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_misc.C:1565:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_misc.C:1565:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly.C:100:11: warning: Member variable 'Assembly::AS_donequickdenovocoveragecheck' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/assembly.C:100:11: warning: Member variable 'Assembly::AS_guessedtemplatevalues' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/assembly.C:100:11: warning: Member variable 'Assembly::AS_deleteoldresultfiles' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/assembly.C:1873:16: performance:inconclusive: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/mira/assembly.H:1202:8: note: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/assembly.C:1873:16: note: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/assembly.C:1924:18: performance:inconclusive: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/mira/assembly.H:1207:10: note: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/assembly.C:1924:18: note: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/assembly.C:283:16: performance:inconclusive: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/mira/assembly.H:1250:8: note: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/assembly.C:283:16: note: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/assembly.H:979:7: style: Struct 'insertafter_t' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
mira-4.9.6/src/mira/assembly.C:2973:69: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
mira-4.9.6/src/mira/assembly.C:2067:6: style: Condition '!allok' is always false [knownConditionTrueFalse]
mira-4.9.6/src/mira/assembly.C:2053:14: note: Assignment 'allok=true', assigned value is 1
mira-4.9.6/src/mira/assembly.C:2067:6: note: Condition '!allok' is always false
mira-4.9.6/src/mira/assembly.C:1204:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:1754:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:1765:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:1789:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:1798:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:2524:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:2575:6: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:2593:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:3446:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly.C:1215:18: style: The scope of the variable 'eparams' can be reduced. [variableScope]
mira-4.9.6/src/mira/assembly.C:2912:17: style: The scope of the variable 'megahubtmpfname' can be reduced. [variableScope]
mira-4.9.6/src/mira/assembly.C:2738:123: style:inconclusive: Function 'findPossibleOverlaps' argument 4 names different: declaration 'tmpname' definition 'tmpfname'. [funcArgNamesDifferent]
mira-4.9.6/src/mira/assembly.H:1186:26: note: Function 'findPossibleOverlaps' argument 4 names different: declaration 'tmpname' definition 'tmpfname'.
mira-4.9.6/src/mira/assembly.C:2738:123: note: Function 'findPossibleOverlaps' argument 4 names different: declaration 'tmpname' definition 'tmpfname'.
mira-4.9.6/src/mira/assembly.C:2811:121: style:inconclusive: Function 'fpo_buildFileNames' argument 4 names different: declaration 'tmpname' definition 'tmpfname'. [funcArgNamesDifferent]
mira-4.9.6/src/mira/assembly.H:1194:24: note: Function 'fpo_buildFileNames' argument 4 names different: declaration 'tmpname' definition 'tmpfname'.
mira-4.9.6/src/mira/assembly.C:2811:121: note: Function 'fpo_buildFileNames' argument 4 names different: declaration 'tmpname' definition 'tmpfname'.
mira-4.9.6/src/mira/assembly.C:2863:111: style:inconclusive: Function 'fpo_main' argument 4 names different: declaration 'tmpname' definition 'tmpfname'. [funcArgNamesDifferent]
mira-4.9.6/src/mira/assembly.H:1190:21: note: Function 'fpo_main' argument 4 names different: declaration 'tmpname' definition 'tmpfname'.
mira-4.9.6/src/mira/assembly.C:2863:111: note: Function 'fpo_main' argument 4 names different: declaration 'tmpname' definition 'tmpfname'.
mira-4.9.6/src/mira/assembly.H:476:27: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:477:27: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:478:27: performance: Function parameter 'logname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:483:23: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:484:23: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:485:23: performance: Function parameter 'logname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:496:28: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:497:28: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:498:28: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:502:22: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:503:22: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:504:22: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:542:28: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:543:28: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:544:28: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:928:27: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:929:27: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:930:27: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:932:26: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:933:26: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:934:26: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2738:70: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2738:96: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2738:123: performance: Function parameter 'tmpfname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2811:68: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2811:94: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2811:121: performance: Function parameter 'tmpfname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2863:58: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2863:84: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.C:2863:111: performance: Function parameter 'tmpfname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1003:18: style: Variable 'iae' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly.C:100:31: style: Parameter 'manifest' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/mira/assembly.C:1809:16: style: Variable 'fn' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly.C:2390:100: style: Parameter 'pbdsev' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/mira/assembly.C:666:14: style: Variable 'ptr' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/mira/assembly.C:596:38: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly.C:1463:8: error: Uninitialized variable: eparams [uninitvar]
mira-4.9.6/src/mira/assembly.C:1045:14: style: Variable 'dummy' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly.C:1045:9: style: Variable 'dummy' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:83:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:205:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:295:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:401:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:554:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:648:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_MAF [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:675:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_posfmatch_filename [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:907:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1040:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1281:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1352:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1486:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1635:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1813:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1882:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:2060:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:95:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:147:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:169:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:246:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:268:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:304:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:326:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:403:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:646:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:751:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:1258:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:2513:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_FASTAPADDED [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:2555:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_FASTAPADDED [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:2629:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:2732:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable REA_tagentry_idSOFAdatabank_entry [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:2797:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable left [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:2965:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3043:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3071:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_TCS [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3094:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_TCS [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3131:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3161:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_ACE [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3189:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_ACE [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3213:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3262:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3294:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3342:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3379:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3584:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_HTML [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:3609:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_HTML [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1436:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_pbcorrect.C:950:12: style: Redundant initialization for 'check'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/mira/assembly_pbcorrect.C:948:15: note: check is initialized
mira-4.9.6/src/mira/assembly_pbcorrect.C:950:12: note: check is overwritten
mira-4.9.6/src/mira/assembly_pbcorrect.C:1082:10: style: The scope of the variable 'cancorrect' can be reduced. [variableScope]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1083:10: style: The scope of the variable 'isbasechange' can be reduced. [variableScope]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1084:10: style: The scope of the variable 'isinsert' can be reduced. [variableScope]
mira-4.9.6/src/mira/assembly_pbcorrect.C:779:12: style: Local variable 'vI' shadows outer variable [shadowVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:718:8: note: Shadowed declaration
mira-4.9.6/src/mira/assembly_pbcorrect.C:779:12: note: Shadow variable
mira-4.9.6/src/mira/assembly_pbcorrect.C:745:14: style: Variable 'vshe' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1533:13: style: Variable 'rval' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1552:15: style: Variable 'rval' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1135:35: style: Consider using std::find_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1460:22: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1534:22: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1551:14: style: Variable 'istie' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1558:8: style: Variable 'istie' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1562:8: style: Variable 'istie' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1570:11: style: Variable 'istie' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1574:11: style: Variable 'istie' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1649:23: style: Variable 'prekillconflict' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1765:9: style: Variable 'cchar' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_pbcorrect.C:1649:8: style: Variable 'prekillconflict' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_reduceskimhits.C:397:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_reduceskimhits.C:397:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_swalign.C:115:0: error: #error "This code is made for 8 sequencing types, adapt! Also adapt if other aligns are used." [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_swalign.C:115:2: error: #error "This code is made for 8 sequencing types, adapt! Also adapt if other aligns are used." [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_output.C:2806:15: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled]
mira-4.9.6/src/mira/assembly_output.C:3430:20: portability: Non reentrant function 'getlogin' called. For threadsafe applications it is recommended to use the reentrant replacement function 'getlogin_r'. [prohibitedgetloginCalled]
mira-4.9.6/src/mira/assembly_output.C:834:75: style: Condition '!featurefound' is always true [knownConditionTrueFalse]
mira-4.9.6/src/mira/assembly_output.C:833:23: note: Assignment 'featurefound=false', assigned value is 0
mira-4.9.6/src/mira/assembly_output.C:834:75: note: Condition '!featurefound' is always true
mira-4.9.6/src/mira/assembly_output.C:94:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:146:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:168:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:245:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:267:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:303:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:325:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:623:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:2522:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:2564:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:2682:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3042:7: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3104:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3193:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3277:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3302:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3341:7: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3378:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:3613:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/assembly_output.C:1806:27: style: Redundant initialization for 'baseinfeaturestrain'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/mira/assembly_output.C:1804:30: note: baseinfeaturestrain is initialized
mira-4.9.6/src/mira/assembly_output.C:1806:27: note: baseinfeaturestrain is overwritten
mira-4.9.6/src/mira/assembly_output.C:1880:15: style: Redundant initialization for 'baseinstrain'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/mira/assembly_output.C:1878:25: note: baseinstrain is initialized
mira-4.9.6/src/mira/assembly_output.C:1880:15: note: baseinstrain is overwritten
mira-4.9.6/src/mira/assembly_output.C:3592:3: style:inconclusive: Statements following 'return' will never be executed. [unreachableCode]
mira-4.9.6/src/mira/assembly_output.C:3623:3: style:inconclusive: Statements following 'return' will never be executed. [unreachableCode]
mira-4.9.6/src/mira/contig.H:268:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/contig.H:268:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_output.C:455:16: style: Variable 'cr' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:763:16: style: Variable 'cr' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:794:16: style: Variable 'cont' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1498:14: style: Variable 'cie' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1599:18: style: Variable 'f' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1868:17: style: Variable 'snic' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1961:19: style: Variable 'tmpc' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1968:14: style: Variable 'aais' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1970:16: style: Variable 'aaif' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1982:19: style: Variable 'tmpc' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1989:14: style: Variable 'cvis' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:1991:16: style: Variable 'cvif' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2003:19: style: Variable 'tmpc' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2008:19: style: Variable 'tmpc' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2058:16: style: Variable 'aais' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2085:16: style: Variable 'aais' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2109:16: style: Variable 'aais' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2185:19: style: Variable 'tmpc' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2205:19: style: Variable 'tmpf' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2207:19: style: Variable 'tmps' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:2209:14: style: Variable 'tmpsn' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/assembly_output.C:482:26: style: Consider using std::fill or std::generate algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_output.C:1971:24: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_output.C:1992:24: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_output.C:2086:21: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/assembly_output.C:2210:20: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/contig_analysis.C:1723:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/contig_analysis.C:1723:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/assembly_output.C:556:18: style: Unused variable: serialc [unusedVariable]
mira-4.9.6/src/mira/assembly_output.C:692:41: style: Variable 'contig_tci' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_output.C:1412:17: style: Variable 'unused' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/contig_covanalysis.C:134:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CON_counts [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly_output.C:1412:11: style: Variable 'unused' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/assembly_output.C:2955:30: style: Variable 'tpos' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/contig_covanalysis.C:134:14: style: Variable 'cce' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/contig_covanalysis.C:130:19: style: Variable 'tstr' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/contig_covanalysis.C:130:15: style: Variable 'tstr' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/contig_output.C:105:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/contig_output.C:105:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/dataprocessing.C:682:7: error: syntax error [syntaxError]
mira-4.9.6/src/mira/dynamic.C:550:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/dynamic.C:689:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/dynamic.C:793:111: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable al_kpercent [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/dynamic.C:1412:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/dynamic.C:1542:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/assembly.H:1184:26: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1185:26: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1186:26: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1188:21: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1189:21: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1190:21: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1192:24: performance: Function parameter 'prefix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1193:24: performance: Function parameter 'postfix' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/assembly.H:1194:24: performance: Function parameter 'tmpname' should be passed by const reference. [passedByValue]
mira-4.9.6/src/mira/gbf_parse.C:84:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GBF_oldmiragbf2gff3translations [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:156:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:175:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:194:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:268:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:305:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GBF_sequences [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:422:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:588:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTERNAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:667:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:709:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:827:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gbf_parse.C:867:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GBF_miragbfscankeys [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/dynamic.C:0:0: debug: ValueFlow maximum iterations exceeded [valueFlowMaxIterations]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_bswmatrix' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_bswm_setup' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p1' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p2a' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p2b' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p3' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_bswm_cleanband' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:103:10: warning: Member variable 'Dynamic::DYN_timing_seqcopy' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_bswmatrix' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_bswm_setup' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p1' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p2a' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p2b' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_bswm_p3' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_bswm_cleanband' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:79:10: warning: Member variable 'Dynamic::DYN_timing_seqcopy' is not initialized in the constructor. [uninitMemberVar]
mira-4.9.6/src/mira/dynamic.C:660:16: performance:inconclusive: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/mira/dynamic.H:122:9: note: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/dynamic.C:660:16: note: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/dynamic.C:153:15: performance:inconclusive: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/mira/dynamic.H:124:8: note: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/dynamic.C:153:15: note: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace).
mira-4.9.6/src/mira/dynamic.C:632:15: style:inconclusive: Technically the member function 'Dynamic::discard' can be const. [functionConst]
mira-4.9.6/src/mira/dynamic.H:141:8: note: Technically the member function 'Dynamic::discard' can be const.
mira-4.9.6/src/mira/dynamic.C:632:15: note: Technically the member function 'Dynamic::discard' can be const.
mira-4.9.6/src/mira/dynamic.C:1406:15: style:inconclusive: Technically the member function 'Dynamic::dump' can be const. [functionConst]
mira-4.9.6/src/mira/dynamic.H:148:8: note: Technically the member function 'Dynamic::dump' can be const.
mira-4.9.6/src/mira/dynamic.C:1406:15: note: Technically the member function 'Dynamic::dump' can be const.
mira-4.9.6/src/mira/dynamic.C:1540:15: style:inconclusive: Technically the member function 'Dynamic::coutWhatWasGiven' can be const. [functionConst]
mira-4.9.6/src/mira/dynamic.H:151:8: note: Technically the member function 'Dynamic::coutWhatWasGiven' can be const.
mira-4.9.6/src/mira/dynamic.C:1540:15: note: Technically the member function 'Dynamic::coutWhatWasGiven' can be const.
mira-4.9.6/src/mira/dynamic.H:131:3: style: Class 'Dynamic' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
mira-4.9.6/src/mira/dynamic.C:549:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/dynamic.C:561:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/dynamic.C:1023:21: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/dynamic.C:1098:21: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/dynamic.C:1188:21: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/dynamic.C:1272:21: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/dynamic.C:1013:19: style: Variable 'ptrt' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/gbf_parse.C:681:11: style: Redundant initialization for 'tokenend'. The initialized value is overwritten before it is read. [redundantInitialization]
mira-4.9.6/src/mira/gbf_parse.C:674:16: note: tokenend is initialized
mira-4.9.6/src/mira/gbf_parse.C:681:11: note: tokenend is overwritten
mira-4.9.6/src/mira/gbf_parse.C:479:18: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/gff_parse.C:52:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFP_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:61:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFP_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:140:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:159:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:178:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_save.C:88:81: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFS_foutname [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:204:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_save.C:110:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFS_foutp [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:349:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFP_errorstatus [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_save.C:188:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFS_gff3_strainnames [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:496:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFP_sequences [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_save.C:269:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFS_foutp [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:562:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFP_gff3scankeys [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:600:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable token_compress_on [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:681:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable token_compress_on [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/gff_parse.C:806:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GFFP_regex_extractkeys [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats.C:1192:3: error: There is an unknown macro here somewhere. Configuration is required. If saveHashStatistics is a macro then please configure it. [unknownMacro]
mira-4.9.6/src/mira/gff_parse.C:370:17: warning: Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
mira-4.9.6/src/mira/gff_parse.C:369:9: note: outer condition: !gffin.eof()
mira-4.9.6/src/mira/gff_parse.C:370:17: note: opposite inner condition: gffin.eof()
mira-4.9.6/src/mira/gff_parse.C:395:19: warning: Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
mira-4.9.6/src/mira/gff_parse.C:394:11: note: outer condition: !gffin.eof()
mira-4.9.6/src/mira/gff_parse.C:395:19: note: opposite inner condition: gffin.eof()
mira-4.9.6/src/mira/gff_parse.C:528:13: style: Variable 'errorsfound' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/gff_parse.C:535:13: style: Variable 'errorsfound' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/hashstats_sdbg.C:96:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HS_hsv_hashstats [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:234:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:352:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HS_hs_basesperhash [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:404:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:445:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HS_hsv_hashstatnodes [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:485:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HS_hsv_dbgseqs [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:529:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HS_hs_basesperhash [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:621:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HS_hs_basesperhash [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:721:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HS_hsv_hashstatnodes [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:563:10: style: Condition 'insearch' is always false [knownConditionTrueFalse]
mira-4.9.6/src/mira/hashstats_sdbg.C:544:17: note: Assignment 'insearch=false', assigned value is 0
mira-4.9.6/src/mira/hashstats_sdbg.C:563:10: note: Condition 'insearch' is always false
mira-4.9.6/src/mira/hashstats_sdbg.C:583:18: style: Condition 'lastgoodpos>=0' is always false [knownConditionTrueFalse]
mira-4.9.6/src/mira/hashstats_sdbg.C:537:22: note: Assignment 'lastgoodpos=-1', assigned value is -1
mira-4.9.6/src/mira/hashstats_sdbg.C:583:18: note: Condition 'lastgoodpos>=0' is always false
mira-4.9.6/src/mira/hashstats_sdbg.C:657:10: style: Condition 'insearch' is always false [knownConditionTrueFalse]
mira-4.9.6/src/mira/hashstats_sdbg.C:638:17: note: Assignment 'insearch=false', assigned value is 0
mira-4.9.6/src/mira/hashstats_sdbg.C:657:10: note: Condition 'insearch' is always false
mira-4.9.6/src/mira/hashstats_sdbg.C:677:18: style: Condition 'lastgoodpos>=0' is always false [knownConditionTrueFalse]
mira-4.9.6/src/mira/hashstats_sdbg.C:631:22: note: Assignment 'lastgoodpos=-1', assigned value is -1
mira-4.9.6/src/mira/hashstats_sdbg.C:677:18: note: Condition 'lastgoodpos>=0' is always false
mira-4.9.6/src/mira/hashstats_sdbg.C:544:8: style: The scope of the variable 'insearch' can be reduced. [variableScope]
mira-4.9.6/src/mira/hashstats_sdbg.C:638:8: style: The scope of the variable 'insearch' can be reduced. [variableScope]
mira-4.9.6/src/mira/hashstats_sdbg.C:96:14: style: Variable 'hse' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/hashstats_sdbg.C:102:14: style: Variable 'hse' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/maf_parse.C:52:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_piptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:60:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_piptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:71:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_readpool [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:78:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:97:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:140:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_vmajor [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:153:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_contig_numreads [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:172:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_read_len [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:208:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_ccallbackfunc [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:238:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_piptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:252:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:299:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:386:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_linenumber [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:569:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinreadgroup [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:578:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinreadgroup [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:587:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:596:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:605:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isincontig [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:620:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:637:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:654:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:675:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:692:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:699:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:705:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:711:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:717:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:723:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:730:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:737:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:743:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:749:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:756:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:762:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:769:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:775:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:782:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:792:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:846:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_vmajor [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:862:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:972:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_tmp_str [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1076:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1089:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1095:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1101:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1107:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1113:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1120:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isinread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1132:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isincontig [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1150:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1171:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1188:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1194:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1204:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_vmajor [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1224:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_readpoolid [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:535:20: style: Variable 'seq' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/maf_parse.C:1269:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_isincontig [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1322:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_read_seqtype [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:579:12: style: Variable 'insearch' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/maf_parse.C:1361:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_readpoolid [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:584:14: style: Variable 'insearch' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/maf_parse.C:1460:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_fin [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1472:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAF_readgroup_rgid [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:1499:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/hashstats_sdbg.C:535:17: style: Variable 'seq' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/hashstats_sdbg.C:629:20: style: Variable 'seq' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/hashstats_sdbg.C:673:12: style: Variable 'insearch' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/hashstats_sdbg.C:678:14: style: Variable 'insearch' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/hashstats_sdbg.C:629:17: style: Variable 'seq' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/manifest.C:125:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/manifest.C:153:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/manifest.C:480:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAN_job [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/manifest.C:512:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/manifest.C:550:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAN_manifestdata2load [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/maf_parse.C:115:17: warning: Opposite inner 'if' condition leads to a dead code block. [oppositeInnerCondition]
mira-4.9.6/src/mira/maf_parse.C:114:9: note: outer condition: !mafin.eof()
mira-4.9.6/src/mira/maf_parse.C:115:17: note: opposite inner condition: mafin.eof()
mira-4.9.6/src/mira/maf_parse.C:262:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/maf_parse.C:546:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/maf_parse.C:1296:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/maf_parse.C:1306:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/maf_parse.C:929:22: style: Variable 'targettag.source' is reassigned a value before the old one has been used. [redundantAssignment]
mira-4.9.6/src/mira/maf_parse.C:925:24: note: targettag.source is assigned
mira-4.9.6/src/mira/maf_parse.C:929:22: note: targettag.source is overwritten
mira-4.9.6/src/mira/maf_parse.C:929:22: style: Variable 'targettag.source' is reassigned a value before the old one has been used. [redundantAssignment]
mira-4.9.6/src/mira/maf_parse.C:927:24: note: targettag.source is assigned
mira-4.9.6/src/mira/maf_parse.C:929:22: note: targettag.source is overwritten
mira-4.9.6/src/mira/maf_parse.C:972:40: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/maf_parse.C:987:43: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/maf_parse.C:1015:43: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/maf_parse.C:1019:43: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/maf_parse.C:1027:43: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/maf_parse.C:1057:40: style: Consider using std::replace_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/maf_parse.C:1417:8: style: Consider using std::fill or std::generate algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/mira/maf_parse.C:110:15: style: Unused variable: acttoken [unusedVariable]
mira-4.9.6/src/mira/maf_parse.C:383:8: style: Variable 'hascontig' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/manifest.C:262:2: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/manifest.C:480:14: style: Variable 'je' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/multitag.C:79:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable from [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/multitag.C:153:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable to [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/multitag.C:166:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable from [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/multitag.C:186:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable from [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/multitag.C:226:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable from [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/multitag.C:262:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable from [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/multitag.C:306:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable commentisgff3 [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/manifest.C:548:21: style: Unused variable: tmpgff3 [unusedVariable]
mira-4.9.6/src/mira/multitag.C:128:18: style: Variable 'needsemicolon' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/multitag.C:333:18: style: Variable 'needsemicolon' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/parameters.C:405:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/parameters.C:405:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/pcrcontainer.C:84:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PCR_bo_binsize [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:103:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:166:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PCR_maprpids_to_rpb_v [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:194:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PCR_maprpids_to_rpb_v [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:219:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PCR_maprpids_to_rpb_v [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:257:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lt_offsetfrom [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:310:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PCR_offsetmap [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:401:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PCR_readdump [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:470:87: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PCR_bo_binsize [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:620:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lt_offsetfrom [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:724:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable from [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:764:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable urdid [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:853:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable lt_offsetfrom [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/pcrcontainer.C:869:3: style:inconclusive: Statements following 'return' will never be executed. [unreachableCode]
mira-4.9.6/src/mira/pcrcontainer.C:173:13: style: Variable 'm' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/ads.C:0:0: debug: ValueFlow maximum iterations exceeded [valueFlowMaxIterations]
mira-4.9.6/src/mira/ads.C:2301:3: performance: Variable 'ADSE_id1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2302:3: performance: Variable 'ADSE_id2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2303:3: performance: Variable 'ADSE_len1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2304:3: performance: Variable 'ADSE_len2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2305:3: performance: Variable 'ADSE_lexpandof1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2306:3: performance: Variable 'ADSE_rexpandof1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2307:3: performance: Variable 'ADSE_lexpandof2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2308:3: performance: Variable 'ADSE_rexpandof2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2309:3: performance: Variable 'ADSE_dir1' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.C:2310:3: performance: Variable 'ADSE_dir2' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
mira-4.9.6/src/mira/ads.H:110:3: style: Class 'AlignedDualSeq' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
mira-4.9.6/src/mira/ads.C:1444:34: style: Expression is always false because 'else if' condition matches previous condition at line 1442. [multiCondition]
mira-4.9.6/src/mira/ads.C:1445:27: style: Assignment 'ADSF_id1and2_directions=1' is redundant with condition 'ADSF_id1and2_directions==1'. [duplicateConditionalAssign]
mira-4.9.6/src/mira/ads.C:1444:34: note: Condition 'ADSF_id1and2_directions==1'
mira-4.9.6/src/mira/ads.C:1445:27: note: Assignment 'ADSF_id1and2_directions=1' is redundant
mira-4.9.6/src/mira/ads.C:160:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:161:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:162:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:163:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:164:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:165:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:167:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:168:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:169:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:170:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:171:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:172:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:173:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:174:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:175:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:176:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:177:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:178:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:179:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:180:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:181:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:182:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:185:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:186:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:187:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:188:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:189:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:191:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:192:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:193:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:194:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:195:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:196:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:197:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:198:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:199:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:200:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:201:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:202:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:203:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:204:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:205:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:206:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:208:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:209:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:210:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:211:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:212:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:213:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:214:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:215:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:216:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:217:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:218:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:219:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:220:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:221:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:222:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:223:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:224:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:226:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:227:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:228:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:229:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:230:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:231:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:232:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:233:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:234:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:235:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:236:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:237:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:238:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:239:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:240:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:241:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:243:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:244:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:245:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:246:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:247:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:248:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:249:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:250:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:251:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:252:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:253:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:254:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:255:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:256:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:257:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:258:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:260:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:261:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:262:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:263:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:264:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:265:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:266:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:267:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:268:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:269:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:270:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:271:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:272:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:273:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:274:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:275:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:277:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:278:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:279:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:280:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:281:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:282:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:283:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:284:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:285:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:286:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:287:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:288:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:289:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:290:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:291:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:292:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:294:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:295:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:296:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:297:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:298:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:300:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:301:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:302:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:303:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:305:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:306:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:307:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:309:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:310:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:312:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:313:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:314:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:315:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:316:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:317:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:318:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:319:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:320:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:321:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:322:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:323:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:324:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:325:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:326:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:327:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:330:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:331:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:332:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:333:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:334:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:335:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:336:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:337:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:338:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:339:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:340:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:341:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:342:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:343:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:344:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:345:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:347:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:348:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:349:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:350:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:351:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:352:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:353:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:354:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:355:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:356:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:357:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:358:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:359:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:360:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:362:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:363:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:364:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:365:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:366:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:367:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:368:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:369:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:370:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:371:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:372:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:373:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:374:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:376:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:377:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:378:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:379:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:380:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:381:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:382:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:383:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:384:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:385:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:386:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:387:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:389:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:390:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:391:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:392:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:393:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:394:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:395:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:396:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:397:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:398:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:399:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:401:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:402:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:403:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:404:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:405:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:406:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:407:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:408:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:409:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:410:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:412:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:413:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:414:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:415:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:416:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:417:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:418:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:419:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:420:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:422:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:423:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:424:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:425:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:426:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:427:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:428:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:429:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:431:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:432:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:433:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:434:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:435:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:436:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:437:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:439:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:440:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:441:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:442:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:443:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:444:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:446:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:447:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:448:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:449:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:450:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:452:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:453:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:454:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:455:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:457:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:458:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:459:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:461:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:462:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:464:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:470:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:471:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:472:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:473:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:474:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:475:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:477:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:478:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:479:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:480:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:481:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:482:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:483:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:484:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:485:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:486:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:487:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:488:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:489:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:490:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:491:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:492:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:495:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:497:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:498:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:499:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:500:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:501:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:502:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:503:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:504:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:505:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:506:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:507:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:508:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:509:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:510:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:511:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:512:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:513:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:514:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:515:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:516:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:518:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:519:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:520:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:521:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:522:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:523:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:524:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:525:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:526:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:527:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:528:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:529:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:530:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:531:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:532:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:533:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:534:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:536:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:537:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:538:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:539:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:540:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:541:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:542:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:543:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:544:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:545:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:546:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:547:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:548:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:549:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:550:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:551:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:553:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:554:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:555:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:556:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:557:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:558:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:559:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:560:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:561:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:562:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:563:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:564:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:565:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:566:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:567:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:568:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:570:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:571:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:572:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:573:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:574:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:575:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:576:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:577:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:578:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:579:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:580:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:581:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:582:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:583:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:584:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:585:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:587:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:588:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:589:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:590:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:591:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:592:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:593:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:594:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:595:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:596:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:597:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:598:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:599:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:600:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:601:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:602:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:604:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:605:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:606:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:607:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:608:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:610:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:611:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:612:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:613:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:615:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:616:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:617:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:619:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:620:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:623:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:624:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:625:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:626:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:627:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:628:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:629:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:630:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:631:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:632:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:633:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:634:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:635:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:636:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:637:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:638:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:640:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:641:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:642:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:643:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:644:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:645:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:646:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:647:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:648:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:649:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:650:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:651:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:652:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:653:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:654:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:655:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:657:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:658:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:659:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:660:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:661:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:662:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:663:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:664:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:665:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:666:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:667:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:668:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:669:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:670:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:672:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:673:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:674:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:675:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:676:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:677:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:678:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:679:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:680:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:681:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:682:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:683:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:684:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:686:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:687:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:688:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:689:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:690:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:691:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:692:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:693:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:694:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:695:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:696:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:697:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:699:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:700:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:701:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:702:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:703:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:704:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:705:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:706:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:707:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:708:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:709:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:712:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:713:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:714:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:715:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:716:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:717:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:718:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:719:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:720:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:721:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:723:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:724:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:725:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:726:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:727:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:728:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:729:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:730:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:731:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:733:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:734:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:735:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:736:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:737:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:738:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:739:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:740:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:742:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:743:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:744:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:745:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:746:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:747:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:748:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:750:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:751:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:752:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:753:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:754:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:755:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:757:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:758:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:759:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:760:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:761:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:763:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:764:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:765:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:766:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:768:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:769:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:770:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:772:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:773:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:775:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:785:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:786:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:787:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:788:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:789:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:790:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:791:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:792:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:793:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:794:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:795:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:796:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:797:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:798:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:799:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:800:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:801:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:802:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:803:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:805:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:806:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:807:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:808:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:809:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:810:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:811:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:812:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:813:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:814:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:815:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:816:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:817:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:818:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:819:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:820:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:821:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:823:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:824:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:825:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:826:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:827:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:828:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:829:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:830:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:831:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:832:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:833:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:834:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:835:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:836:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:837:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:838:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:839:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:840:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:842:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:843:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:844:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:845:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:846:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:847:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:848:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:849:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:850:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:851:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:852:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:853:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:854:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:855:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:856:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:857:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:858:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:859:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:861:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:862:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:863:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:864:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:865:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:866:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:867:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:868:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:869:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:870:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:871:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:872:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:873:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:874:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:875:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:876:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:877:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:878:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:880:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:881:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:882:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:883:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:884:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:885:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:886:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:887:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:888:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:889:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:890:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:891:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:892:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:893:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:894:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:895:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:896:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:897:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:899:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:900:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:901:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:902:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:903:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:904:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:905:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:906:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:907:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:908:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:909:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:910:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:911:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:912:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:913:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:914:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:915:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:916:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:920:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:921:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:922:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:923:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:924:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:925:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:926:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:927:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:928:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:929:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:930:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:931:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:932:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:933:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:934:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:935:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:937:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:938:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:939:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:940:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:941:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:942:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:943:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:944:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:945:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:946:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:947:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:948:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:949:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:950:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:951:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:952:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:954:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:955:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:956:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:957:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:958:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:959:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:960:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:961:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:962:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:963:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:964:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:965:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:966:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:967:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:969:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:970:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:971:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:972:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:973:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:974:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:975:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:976:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:977:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:978:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:979:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:980:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:981:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:983:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:984:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:985:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:986:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:987:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:988:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:989:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:990:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:991:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:992:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:993:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:994:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:996:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:997:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:998:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:999:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1000:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1001:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1002:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1003:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1004:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1005:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1006:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1008:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1009:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1010:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1011:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1012:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1013:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1014:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1015:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1016:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1017:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1019:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1020:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1021:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1022:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1023:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1024:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1025:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1026:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1027:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1029:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1030:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1031:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1032:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1033:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1034:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1035:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1036:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1038:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1039:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1040:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1041:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1042:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1043:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1044:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1046:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1047:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1048:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1049:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1050:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1051:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1053:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1054:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1055:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1056:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1057:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1059:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1060:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1061:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1062:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1064:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1065:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1066:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1068:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1069:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1071:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1075:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1076:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1077:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1078:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1079:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1080:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1081:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1082:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1083:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1084:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1085:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1086:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1087:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1088:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1089:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1090:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1091:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1092:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1094:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1095:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1096:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1097:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1098:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1099:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1100:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1101:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1102:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1103:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1104:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1105:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1106:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1107:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1108:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1109:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1110:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1111:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1113:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1114:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1115:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1116:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1117:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1118:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1119:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1120:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1121:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1122:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1123:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1124:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1125:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1126:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1127:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1128:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1129:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1130:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1132:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1133:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1134:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1135:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1136:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1137:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1138:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1139:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1140:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1141:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1142:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1143:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1144:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1145:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1146:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1147:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1148:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1149:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1151:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1152:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1153:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1154:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1155:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1156:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1157:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1158:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1159:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1160:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1161:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1162:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1163:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1164:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1165:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1166:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1167:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1168:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1170:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1171:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1172:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1173:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1174:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1175:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1176:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1177:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1178:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1179:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1180:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1181:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1182:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1183:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1184:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1185:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1186:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:1187:13: style: C-style pointer casting [cstyleCast]
mira-4.9.6/src/mira/ads.C:2205:5: style: Statements following 'return' will never be executed. [unreachableCode]
mira-4.9.6/src/mira/ads.C:2191:51: style:inconclusive: Function 'clipper' argument 2 names different: declaration 'numerr' definition 'allerr'. [funcArgNamesDifferent]
mira-4.9.6/src/mira/ads.H:155:15: note: Function 'clipper' argument 2 names different: declaration 'numerr' definition 'allerr'.
mira-4.9.6/src/mira/ads.C:2191:51: note: Function 'clipper' argument 2 names different: declaration 'numerr' definition 'allerr'.
mira-4.9.6/src/mira/ads.C:1401:12: style: Variable 'ptr' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/mira/ads.C:1414:12: style: Variable 'ptr' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/mira/preventinitfiasco.C:268:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/preventinitfiasco.C:268:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
parameters_flexer.cc:4989:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_init [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:7744:2: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yyin [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:7774:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_state_buf [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:7786:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:7838:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:7975:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8005:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8029:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8066:4: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_c_buf_p [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8137:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8160:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8184:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_n_chars [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8230:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8248:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable errno [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8291:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8309:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8333:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8354:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_buffer_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8395:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack_ptr [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8419:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack_ptr [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8427:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable yy_start_stack [valueFlowBailoutIncompleteVar]
parameters_flexer.cc:8436:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/read.C:1693:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/read.C:1693:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/readgrouplib.C:217:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/readgrouplib.C:217:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
parameters_flexer.cc:7892:27: warning: Possible null pointer dereference: b [nullPointer]
parameters_flexer.cc:7889:24: note: Assignment 'b=(yy_buffer_stack)?(yy_buffer_stack)[yy_buffer_stack_top]:NULL', assigned value is 0
parameters_flexer.cc:7892:27: note: Null pointer dereference
parameters_flexer.cc:7894:9: warning: Possible null pointer dereference: b [nullPointer]
parameters_flexer.cc:7889:24: note: Assignment 'b=(yy_buffer_stack)?(yy_buffer_stack)[yy_buffer_stack_top]:NULL', assigned value is 0
parameters_flexer.cc:7894:9: note: Null pointer dereference
parameters_flexer.cc:7903:20: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:7905:16: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:7926:3: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:7954:41: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:7954:60: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8122:7: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8200:7: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8209:17: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8234:10: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8236:9: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8361:24: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8380:24: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8403:23: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8406:23: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8406:41: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8497:27: style: C-style pointer casting [cstyleCast]
parameters_flexer.cc:8502:8: style: C-style pointer casting [cstyleCast]
parameters_flexer.ll:90:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:97:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:104:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:111:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:118:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
mira-4.9.6/src/mira/readpool.C:723:8: error: There is an unknown macro here somewhere. Configuration is required. If MIRANOTIFY is a macro then please configure it. [unknownMacro]
parameters_flexer.ll:125:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:132:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:139:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:146:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:153:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:160:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:165:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:170:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:175:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:180:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:185:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:191:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:198:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:205:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:212:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:226:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:233:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:240:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:247:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:254:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:261:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:268:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:275:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:282:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:289:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:296:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:303:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:310:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:317:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:324:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:331:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:338:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:345:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:352:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:359:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:366:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:373:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:380:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:387:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:394:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:401:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:408:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:413:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:420:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:427:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:434:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:441:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:448:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:455:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:462:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:469:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:476:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:483:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:490:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:497:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:504:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:511:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:518:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:525:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:532:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:537:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:542:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:549:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:556:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:561:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:566:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:571:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:576:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:581:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:586:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:593:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:600:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:607:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:614:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:621:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:628:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:635:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:642:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:649:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:656:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:663:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:670:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:677:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:684:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:691:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:698:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:705:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:712:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:719:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:726:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:733:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:740:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:747:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:754:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:761:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:768:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:775:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:782:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:789:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:796:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:803:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:810:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:817:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:824:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:831:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:838:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:845:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:852:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:859:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:866:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:873:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:880:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:887:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:911:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:916:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:926:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:931:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:936:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:941:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:946:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:951:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:956:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:961:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:966:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:976:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:993:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1000:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1007:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1014:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1021:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1028:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1035:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1042:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1049:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1056:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1063:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1070:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1077:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1084:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1091:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1098:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1105:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1112:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1119:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1126:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1133:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1140:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1147:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1154:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1161:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1166:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1173:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1180:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1187:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1194:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1201:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1208:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1215:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1225:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1235:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1242:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1249:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1256:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1263:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1268:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1273:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1280:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1287:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1294:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1301:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1308:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1315:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1322:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1329:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1336:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1343:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1350:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1357:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1364:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1371:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1378:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1385:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1392:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1399:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1406:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1413:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1420:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1427:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1434:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1441:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1448:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1455:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1462:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1469:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1476:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1483:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1490:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1497:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1504:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1511:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1518:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1525:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1532:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1539:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1546:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1553:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1560:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1567:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1574:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1581:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1588:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1595:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1602:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1609:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1616:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1623:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1630:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1637:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1644:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1649:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1654:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1659:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1664:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1669:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1674:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1680:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1687:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1694:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1701:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1708:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1717:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1724:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1733:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1740:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1747:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1754:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1761:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1768:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1775:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1782:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1789:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1805:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1812:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1819:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1826:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1833:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1840:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1847:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1854:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1861:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1866:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1871:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1876:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1881:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1886:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1893:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1900:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1907:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1914:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1921:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1928:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1935:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1942:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1949:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1954:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1959:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1964:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1974:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1979:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1984:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1991:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:1998:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2005:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2012:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2019:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2026:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2033:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2040:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2045:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2050:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2055:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2060:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2065:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2070:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2075:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2080:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2085:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2090:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2095:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2100:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2105:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2110:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2117:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2128:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2139:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2144:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2149:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2154:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2164:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2170:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2176:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2181:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2186:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2191:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2196:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2201:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2206:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2211:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2216:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2221:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2226:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2238:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2245:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2252:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2259:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2268:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2275:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2282:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2289:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2296:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2303:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2312:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2321:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2328:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2335:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2344:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2351:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2362:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2369:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2374:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2379:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2384:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2389:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2394:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2399:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2404:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2409:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2414:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2419:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2424:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2429:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2434:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2439:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2444:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2449:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2454:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2459:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2464:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2478:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2483:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2488:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2493:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2498:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2503:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2513:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2520:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2528:2: style:inconclusive: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2533:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2538:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2543:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2581:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
parameters_flexer.ll:2586:2: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
mira-4.9.6/src/mira/readpool_io.C:47:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_rpptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:69:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_rpptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:131:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_loadstatus [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:154:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_clistptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:163:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_loadstatus [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:209:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_loadstatus [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:261:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INTERNAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:280:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:314:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_maf_parse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:323:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_caf_parse [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:333:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_gbf_gbfloaded [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:341:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_gff_gffloaded [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:354:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:408:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_loadstatus [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:443:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_progressindic [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:479:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_totalreadsloaded [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:656:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_totalreadsloaded [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:780:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_gbf_gbfloaded [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:828:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_gff_gffloaded [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:934:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_fofnexp_nameiloaded [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/readpool_io.C:975:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RPIO_rgid [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/sam_collect.C:382:7: error: There is an unknown macro here somewhere. Configuration is required. If BUGIFTHROW is a macro then please configure it. [unknownMacro]
mira-4.9.6/src/mira/readpool_io.C:948:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/readpool_io.C:984:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/mira/readpool_io.C:705:18: style: Variable 'iv' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/scaffolder.C:105:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/scaffolder.C:208:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SCA_readlinks [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/simplebloomfilter.H:132:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/simplebloomfilter.C:39:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/simplebloomfilter.H:77:19: performance:inconclusive: Technically the member function 'SimpleBloomFilter < vhash64_t >::rotl64' can be static (but you may consider moving to unnamed namespace). [functionStatic]
mira-4.9.6/src/mira/simplebloomfilter.C:35:79: style:inconclusive: Function 'SimpleBloomFilter < vhash64_t >' argument 2 names different: declaration 'numhashes' definition 'numkeys'. [funcArgNamesDifferent]
mira-4.9.6/src/mira/simplebloomfilter.H:120:52: note: Function 'SimpleBloomFilter < vhash64_t >' argument 2 names different: declaration 'numhashes' definition 'numkeys'.
mira-4.9.6/src/mira/simplebloomfilter.C:35:79: note: Function 'SimpleBloomFilter < vhash64_t >' argument 2 names different: declaration 'numhashes' definition 'numkeys'.
mira-4.9.6/src/mira/skim.C:2262:0: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/skim.C:2262:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
mira-4.9.6/src/mira/skim.H:213:5: error: There is an unknown macro here somewhere. Configuration is required. If BUGIFTHROW is a macro then please configure it. [unknownMacro]
mira-4.9.6/src/mira/warnings.C:86:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WA_messages [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/warnings.C:137:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/misc.C:50:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/misc.C:119:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/misc.C:149:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GE_namesread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/misc.C:155:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GE_namesread [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/misc.C:108:6: style: Condition 'addnl' is always true [knownConditionTrueFalse]
mira-4.9.6/src/modules/misc.C:87:9: note: Assignment 'addnl=true', assigned value is 1
mira-4.9.6/src/modules/misc.C:108:6: note: Condition 'addnl' is always true
mira-4.9.6/src/modules/mod_bait.C:149:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:160:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:258:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_ILLEGAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:265:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_ILLEGAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:281:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:302:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MB_nameprefix [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:372:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MB_numclippedreadsinload [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:397:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MB_numclippedreadsinload [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:424:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable writetype [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:481:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ctrlCHandler [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:699:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MB_basesperhash [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_bait.C:999:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_bait.C:1002:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_bait.C:304:15: style: The scope of the variable 'matchpre' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_bait.C:305:15: style: The scope of the variable 'misspre' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_bait.C:718:9: style: Local variable 'c' shadows outer variable [shadowVariable]
mira-4.9.6/src/modules/mod_bait.C:688:7: note: Shadowed declaration
mira-4.9.6/src/modules/mod_bait.C:718:9: note: Shadow variable
mira-4.9.6/src/modules/mod_bait.C:688:7: style: Unused variable: c [unusedVariable]
mira-4.9.6/src/modules/mod_dbgreplay.C:39:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEQTYPE_SANGER [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_dbgreplay.C:26:6: style: Condition '!paramstring.empty()' is always true [knownConditionTrueFalse]
mira-4.9.6/src/modules/mod_convert.C:116:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_ofs [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:121:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:420:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:493:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:582:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:678:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_clist [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:722:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable contig__nameordercomp [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:730:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:760:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_specialtestcode [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1186:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_mincontiglength [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1268:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_deletestaronlycolumns [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1434:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_totype [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1492:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_renamesequences [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1518:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CP_ofs [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1538:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1547:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1584:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_diff.C:52:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_diff.C:60:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MD_miraparams [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_diff.C:114:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_diff.C:244:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable no_argument [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_diff.C:294:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_diff.C:297:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_memestim.C:52:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_memestim.C:83:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_memestim.C:125:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_memestim.C:133:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_memestim.C:149:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_convert.C:1953:18: style: Expression is always false because 'else if' condition matches previous condition at line 1939. [multiCondition]
mira-4.9.6/src/modules/mod_convert.C:656:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_convert.C:1256:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_convert.C:2090:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_convert.C:2095:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_convert.C:1432:19: style: The scope of the variable 'ofstmp' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_convert.C:1560:7: style: The scope of the variable 'c' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_convert.C:1899:19: style: The scope of the variable 'ofstmp' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_convert.C:491:16: style: Variable 'sn' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/modules/mod_convert.C:1434:14: style: Variable 'tte' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/modules/mod_convert.C:1888:16: style: Variable 'tt' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/modules/mod_convert.C:1900:14: style: Variable 'tte' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/modules/mod_convert.C:1984:16: style: Variable 'tte' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/modules/mod_convert.C:1990:22: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/modules/mod_convert.C:887:22: style: Unused variable: fa [unusedVariable]
mira-4.9.6/src/modules/mod_convert.C:887:25: style: Unused variable: fs [unusedVariable]
mira-4.9.6/src/modules/mod_convert.C:887:28: style: Unused variable: fc [unusedVariable]
mira-4.9.6/src/modules/mod_convert.C:1566:15: style: Variable 'strainfile' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/modules/mod_memestim.C:139:7: style: The scope of the variable 'c' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_mer.C:48:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:101:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:139:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:175:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:199:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:221:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:249:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:271:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:285:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:362:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:390:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:417:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:443:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:482:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable no_argument [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mira.C:83:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable no_argument [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mira.C:190:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mira.C:299:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mira.C:461:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_mer.C:159:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_mer.C:576:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_mer.C:579:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_mira.C:295:8: style: The scope of the variable 'couldextractlargecontigs' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_mira.C:81:26: style: Variable 'long_options' can be declared as const array [constVariable]
mira-4.9.6/src/modules/mod_scaffold.C:64:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cafmafload_callback [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_scaffold.C:85:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_scaffold.C:89:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_scaffold.C:61:10: style: The scope of the variable 'filename' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_sigconex.C:48:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_tagsnp.C:47:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_sigconex.C:72:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optind [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_tagsnp.C:66:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AS_CAF [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_sigconex.C:185:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable no_argument [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_tagsnp.C:74:65: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NWWARN [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_tagsnp.C:86:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_tagsnp.C:107:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable con_disregard_spurious_rmb_mismatches [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/modules/mod_tagsnp.C:172:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_tagsnp.C:175:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_tagsnp.C:111:7: style: The scope of the variable 'c' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_tagsnp.C:139:10: style: The scope of the variable 'infile' can be reduced. [variableScope]
mira-4.9.6/src/modules/mod_tagsnp.C:67:14: style: Variable 'cle' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/modules/mod_tagsnp.C:72:16: style: Variable 'dooutput' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/modules/mod_tagsnp.C:72:8: style: Variable 'dooutput' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/modules/mod_tagsnp.C:116:10: style: Variable 'cafin' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/modules/mod_tagsnp.C:117:10: style: Variable 'strainin' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/modules/mod_sigconex.C:240:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_sigconex.C:243:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/modules/mod_sigconex.C:115:51: style: Consider using std::find_if algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/progs/mira.C:67:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/mira.C:92:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RLIMIT_STACK [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/mira.C:197:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/mira.C:210:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/progs/mira.C:214:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/progs/mira.C:98:14: style: Variable 'result' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/progs/quirks.C:59:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:102:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:132:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEQTYPE_SOLEXA [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:165:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:184:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEQTYPE_SOLEXA [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:231:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:252:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:273:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:294:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:318:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/progs/miratest.C:341:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/stdinc/template.C:68:5: error: Syntax Error: AST broken, 'if' doesn't have two operands. [internalAstError]
mira-4.9.6/src/progs/miratest.C:451:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/progs/miratest.C:483:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/progs/miratest.C:500:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/progs/miratest.C:536:3: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/progs/miratest.C:361:3: style:inconclusive: Statements following noreturn function 'exit()' will never be executed. [unreachableCode]
mira-4.9.6/src/progs/miratest.C:457:0: style:inconclusive: Statements following noreturn function 'exit()' will never be executed. [unreachableCode]
mira-4.9.6/src/progs/miratest.C:489:3: style:inconclusive: Statements following noreturn function 'exit()' will never be executed. [unreachableCode]
mira-4.9.6/src/progs/miratest.C:506:3: style:inconclusive: Statements following noreturn function 'exit()' will never be executed. [unreachableCode]
mira-4.9.6/src/progs/miratest.C:495:10: style: The scope of the variable 'bla' can be reduced. [variableScope]
mira-4.9.6/src/progs/miratest.C:54:25: style: Parameter 's' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/progs/miratest.C:71:26: style: Parameter 's' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/progs/miratest.C:457:26: style: Unused variable: Pv [unusedVariable]
mira-4.9.6/src/util/dptools.C:474:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable nsTranslationTables [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/dptools.C:673:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/dptools.C:705:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/dptools.C:838:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cerr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:91:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:155:269: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable errno [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:233:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable npos [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:288:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:308:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:336:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:410:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:474:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:584:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:638:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable success [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:677:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:734:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:788:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:917:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/fileanddisk.C:1026:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/dptools.C:994:28: style: The scope of the variable 'codonvariants' can be reduced. [variableScope]
mira-4.9.6/src/util/dptools.C:661:18: style: Consider using std::any_of algorithm instead of a raw loop. [useStlAlgorithm]
mira-4.9.6/src/util/fileanddisk.C:420:7: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/util/fileanddisk.C:490:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/util/fileanddisk.C:675:5: style: Exception should be caught by reference. [catchExceptionByValue]
mira-4.9.6/src/util/fileanddisk.C:405:8: style: The scope of the variable 'isok' can be reduced. [variableScope]
mira-4.9.6/src/util/fileanddisk.C:988:15: style: The scope of the variable 'runresult' can be reduced. [variableScope]
mira-4.9.6/src/util/fileanddisk.C:528:44: performance: Function parameter 'path' should be passed by const reference. [passedByValue]
mira-4.9.6/src/util/fileanddisk.C:139:25: style: Parameter 'gzf' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/util/fileanddisk.C:199:26: style: Parameter 'gzf' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/util/fmttext.C:95:16: style: Variable 'se' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/util/machineinfo.C:86:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/machineinfo.C:196:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/misc.C:73:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/misc.C:164:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable floatfield [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/misc.C:249:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable errno [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/misc.C:350:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/util/machineinfo.C:84:15: style: The scope of the variable 'tmpline' can be reduced. [variableScope]
mira-4.9.6/src/util/machineinfo.C:197:15: style: The scope of the variable 'dummy' can be reduced. [variableScope]
mira-4.9.6/src/util/misc.C:57:5: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled]
mira-4.9.6/src/util/misc.C:58:28: style: Obsolete function 'asctime' called. It is recommended to use 'strftime' instead. [prohibitedasctimeCalled]
mira-4.9.6/src/util/misc.C:118:14: style: Variable 'suve' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/util/misc.C:136:37: style: Parameter 'oldtv' can be declared as reference to const [constParameterReference]
mira-4.9.6/src/util/misc.C:54:14: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
mira-4.9.6/src/util/misc.C:247:45: warning: Missing bounds check for extra iterator increment in loop. [StlMissingComparison]
mira-4.9.6/src/util/misc.C:252:9: note: Missing bounds check for extra iterator increment in loop.
mira-4.9.6/src/util/misc.C:247:45: note: Missing bounds check for extra iterator increment in loop.
mira-4.9.6/src/util/misc.C:327:18: style: Variable 'needcode' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/util/misc.C:327:10: style: Variable 'needcode' is assigned a value that is never used. [unreadVariable]
mira-4.9.6/src/mira/ppathfinder.C:63:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable QTG_END [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:82:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_actcontig_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:152:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_overlap_edges_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:169:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_overlap_edges_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:184:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_readpool_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:225:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_actcontig_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:272:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_actcontig_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:324:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FATAL [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:431:6: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_buildcontig_newlinecounter [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:468:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_lowerbound_oedges_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:496:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_buildcontig_newlinecounter [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:548:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_bsccontent [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:613:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_bsccontent [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:656:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_used_ids_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:804:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_bsccontent [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:860:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_used_ids_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:994:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_haflevel_maxseen [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:1024:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_bsrandry [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:1040:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_used_ids_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:1104:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_ids_added_oltype [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:1409:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_ids_added_oltype [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:1704:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_queues [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:1791:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable paf_maxcontigclockticks [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:2104:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_lowerbound_oedges_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:2148:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_blacklisted_ids [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:2189:0: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:2305:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEQTYPE_PACBIOHQ [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:2325:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable SEQTYPE_END [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:2385:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PPF_used_ids_ptr [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:2484:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable paf_use_genomic_algorithms [valueFlowBailoutIncompleteVar]
mira-4.9.6/src/mira/ppathfinder.C:1333:32: style:inconclusive: Boolean expression '!oeI->ol_norept' is used in bitwise operation. Did you mean '&&'? [bitwiseOnBoolean]
mira-4.9.6/src/mira/ppathfinder.C:1333:32: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition]
mira-4.9.6/src/mira/ppathfinder.C:2157:4: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
mira-4.9.6/src/mira/ppathfinder.C:2159:5: note: Found duplicate branches for 'if' and 'else'.
mira-4.9.6/src/mira/ppathfinder.C:2157:4: note: Found duplicate branches for 'if' and 'else'.
mira-4.9.6/src/mira/ppathfinder.C:1312:123: style: Same expression on both sides of '&&'. [duplicateExpression]
mira-4.9.6/src/mira/ppathfinder.C:152:14: style: Variable 'oee' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/ppathfinder.C:169:14: style: Variable 'oee' can be declared as reference to const [constVariableReference]
mira-4.9.6/src/mira/ppathfinder.C:1998:14: style: Variable 'doalign' is assigned a value that is never used. [unreadVariable]
diff:
head caf_flexer.cc:2454:61: style: C-style pointer casting [cstyleCast]
head caf_flexer.cc:2917:42: style: C-style pointer casting [cstyleCast]
head exp_flexer.cc:1579:61: style: C-style pointer casting [cstyleCast]
head exp_flexer.cc:2034:42: style: C-style pointer casting [cstyleCast]
head mira-4.9.6/src/errorhandling/errorhandling.C:177:14: style:inconclusive: Technically the member function 'Notify::handleError' can be const. [functionConst]
     mira-4.9.6/src/errorhandling/errorhandling.H:79:8: note: Technically the member function 'Notify::handleError' can be const.
     mira-4.9.6/src/errorhandling/errorhandling.C:177:14: note: Technically the member function 'Notify::handleError' can be const.
head mira-4.9.6/src/errorhandling/errorhandling.C:273:12: style:inconclusive: Technically the member function 'Flow::exitWhenUndefined' can be const. [functionConst]
     mira-4.9.6/src/errorhandling/errorhandling.H:105:8: note: Technically the member function 'Flow::exitWhenUndefined' can be const.
     mira-4.9.6/src/errorhandling/errorhandling.C:273:12: note: Technically the member function 'Flow::exitWhenUndefined' can be const.
2.17.0 mira-4.9.6/src/errorhandling/errorhandling.H:105:8: style:inconclusive: Technically the member function 'Flow::exitWhenUndefined' can be const. [functionConst]
     mira-4.9.6/src/errorhandling/errorhandling.C:273:12: note: Technically the member function 'Flow::exitWhenUndefined' can be const.
     mira-4.9.6/src/errorhandling/errorhandling.H:105:8: note: Technically the member function 'Flow::exitWhenUndefined' can be const.
2.17.0 mira-4.9.6/src/errorhandling/errorhandling.H:79:8: style:inconclusive: Technically the member function 'Notify::handleError' can be const. [functionConst]
     mira-4.9.6/src/errorhandling/errorhandling.C:177:14: note: Technically the member function 'Notify::handleError' can be const.
     mira-4.9.6/src/errorhandling/errorhandling.H:79:8: note: Technically the member function 'Notify::handleError' can be const.
head mira-4.9.6/src/io/exp.C:249:12: performance:inconclusive: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/exp.H:178:10: note: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/exp.C:249:12: note: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/io/exp.C:633:11: style:inconclusive: Technically the member function 'EXP::dump' can be const. [functionConst]
     mira-4.9.6/src/io/exp.H:189:8: note: Technically the member function 'EXP::dump' can be const.
     mira-4.9.6/src/io/exp.C:633:11: note: Technically the member function 'EXP::dump' can be const.
2.17.0 mira-4.9.6/src/io/exp.H:178:10: performance:inconclusive: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/exp.C:249:12: note: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/exp.H:178:10: note: Technically the member function 'EXP::gimmeAnInt' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/io/exp.H:189:8: style:inconclusive: Technically the member function 'EXP::dump' can be const. [functionConst]
     mira-4.9.6/src/io/exp.C:633:11: note: Technically the member function 'EXP::dump' can be const.
     mira-4.9.6/src/io/exp.H:189:8: note: Technically the member function 'EXP::dump' can be const.
head mira-4.9.6/src/io/ncbiinfoxml.C:65:19: performance:inconclusive: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/ncbiinfoxml.H:106:8: note: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/ncbiinfoxml.C:65:19: note: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/io/ncbiinfoxml.H:106:8: performance:inconclusive: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/ncbiinfoxml.C:65:19: note: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/ncbiinfoxml.H:106:8: note: Technically the member function 'NCBIInfoXML::init' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/io/scf.C:1116:5: style: Variable 'tmpsamples' is assigned an expression that holds the same value. [redundantAssignment]
     mira-4.9.6/src/io/scf.C:1106:24: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1109:18: note: SCF_samples_A is assigned 'tmpsamples' here.
     mira-4.9.6/src/io/scf.C:1111:16: note: Assignment 'tmpsamples=new uint16[samples_to_copy]', assigned value is symbolic=SCF_samples_A
     mira-4.9.6/src/io/scf.C:1111:15: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1116:5: note: Variable 'tmpsamples' is assigned an expression that holds the same value.
head mira-4.9.6/src/io/scf.C:1116:5: style: Variable 'tmpsamples' is assigned an expression that holds the same value. [redundantAssignment]
     mira-4.9.6/src/io/scf.C:1106:24: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1109:19: note: Assignment 'SCF_samples_A=tmpsamples', assigned value is symbolic=new uint16[samples_to_copy]
     mira-4.9.6/src/io/scf.C:1106:24: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1109:18: note: SCF_samples_A is assigned 'tmpsamples' here.
     mira-4.9.6/src/io/scf.C:1111:16: note: Assignment 'tmpsamples=new uint16[samples_to_copy]', assigned value is symbolic=new uint16[samples_to_copy]
     mira-4.9.6/src/io/scf.C:1111:15: note: tmpsamples is assigned 'new uint16[samples_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1116:5: note: Variable 'tmpsamples' is assigned an expression that holds the same value.
2.17.0 mira-4.9.6/src/io/scf.C:1142:5: style: Variable 'tmpprob' is assigned an expression that holds the same value. [redundantAssignment]
     mira-4.9.6/src/io/scf.C:1132:20: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1135:15: note: SCF_prob_A is assigned 'tmpprob' here.
     mira-4.9.6/src/io/scf.C:1137:14: note: Assignment 'tmpprob=new uint8[bases_to_copy]', assigned value is symbolic=SCF_prob_A
     mira-4.9.6/src/io/scf.C:1137:12: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1142:5: note: Variable 'tmpprob' is assigned an expression that holds the same value.
head mira-4.9.6/src/io/scf.C:1142:5: style: Variable 'tmpprob' is assigned an expression that holds the same value. [redundantAssignment]
     mira-4.9.6/src/io/scf.C:1132:20: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1135:16: note: Assignment 'SCF_prob_A=tmpprob', assigned value is symbolic=new uint8[bases_to_copy]
     mira-4.9.6/src/io/scf.C:1132:20: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1135:15: note: SCF_prob_A is assigned 'tmpprob' here.
     mira-4.9.6/src/io/scf.C:1137:14: note: Assignment 'tmpprob=new uint8[bases_to_copy]', assigned value is symbolic=new uint8[bases_to_copy]
     mira-4.9.6/src/io/scf.C:1137:12: note: tmpprob is assigned 'new uint8[bases_to_copy]' here.
     mira-4.9.6/src/io/scf.C:1142:5: note: Variable 'tmpprob' is assigned an expression that holds the same value.
head mira-4.9.6/src/io/scf.C:1373:11: style:inconclusive: Technically the member function 'SCF::transposeAmbiguityCodes' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:284:8: note: Technically the member function 'SCF::transposeAmbiguityCodes' can be const.
     mira-4.9.6/src/io/scf.C:1373:11: note: Technically the member function 'SCF::transposeAmbiguityCodes' can be const.
head mira-4.9.6/src/io/scf.C:645:11: style:inconclusive: Technically the member function 'SCF::checkSCFDataOK' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:282:8: note: Technically the member function 'SCF::checkSCFDataOK' can be const.
     mira-4.9.6/src/io/scf.C:645:11: note: Technically the member function 'SCF::checkSCFDataOK' can be const.
head mira-4.9.6/src/io/scf.C:677:11: style:inconclusive: Technically the member function 'SCF::correctPeakIndices' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:283:8: note: Technically the member function 'SCF::correctPeakIndices' can be const.
     mira-4.9.6/src/io/scf.C:677:11: note: Technically the member function 'SCF::correctPeakIndices' can be const.
head mira-4.9.6/src/io/scf.C:691:18: performance:inconclusive: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.H:250:15: note: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.C:691:18: note: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/io/scf.C:698:18: performance:inconclusive: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.H:251:15: note: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.C:698:18: note: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/io/scf.C:712:18: performance:inconclusive: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.H:254:15: note: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.C:712:18: note: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/io/scf.C:719:18: performance:inconclusive: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.H:255:15: note: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.C:719:18: note: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/io/scf.C:738:11: style:inconclusive: Technically the member function 'SCF::undelta16' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:259:8: note: Technically the member function 'SCF::undelta16' can be const.
     mira-4.9.6/src/io/scf.C:738:11: note: Technically the member function 'SCF::undelta16' can be const.
head mira-4.9.6/src/io/scf.C:755:11: style:inconclusive: Technically the member function 'SCF::delta16' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:260:8: note: Technically the member function 'SCF::delta16' can be const.
     mira-4.9.6/src/io/scf.C:755:11: note: Technically the member function 'SCF::delta16' can be const.
head mira-4.9.6/src/io/scf.C:779:11: style:inconclusive: Technically the member function 'SCF::undelta8' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:261:8: note: Technically the member function 'SCF::undelta8' can be const.
     mira-4.9.6/src/io/scf.C:779:11: note: Technically the member function 'SCF::undelta8' can be const.
head mira-4.9.6/src/io/scf.C:796:11: style:inconclusive: Technically the member function 'SCF::delta8' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:262:8: note: Technically the member function 'SCF::delta8' can be const.
     mira-4.9.6/src/io/scf.C:796:11: note: Technically the member function 'SCF::delta8' can be const.
head mira-4.9.6/src/io/scf.C:894:11: style:inconclusive: Technically the member function 'SCF::dumpSample' can be const. [functionConst]
     mira-4.9.6/src/io/scf.H:258:8: note: Technically the member function 'SCF::dumpSample' can be const.
     mira-4.9.6/src/io/scf.C:894:11: note: Technically the member function 'SCF::dumpSample' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:250:15: performance:inconclusive: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.C:691:18: note: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.H:250:15: note: Technically the member function 'SCF::convert4ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/io/scf.H:251:15: performance:inconclusive: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.C:698:18: note: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.H:251:15: note: Technically the member function 'SCF::convert2ByteOrderToHost' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/io/scf.H:254:15: performance:inconclusive: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.C:712:18: note: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.H:254:15: note: Technically the member function 'SCF::convert4ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/io/scf.H:255:15: performance:inconclusive: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/io/scf.C:719:18: note: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/io/scf.H:255:15: note: Technically the member function 'SCF::convert2ByteOrderToNetwork' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/io/scf.H:258:8: style:inconclusive: Technically the member function 'SCF::dumpSample' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:894:11: note: Technically the member function 'SCF::dumpSample' can be const.
     mira-4.9.6/src/io/scf.H:258:8: note: Technically the member function 'SCF::dumpSample' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:259:8: style:inconclusive: Technically the member function 'SCF::undelta16' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:738:11: note: Technically the member function 'SCF::undelta16' can be const.
     mira-4.9.6/src/io/scf.H:259:8: note: Technically the member function 'SCF::undelta16' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:260:8: style:inconclusive: Technically the member function 'SCF::delta16' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:755:11: note: Technically the member function 'SCF::delta16' can be const.
     mira-4.9.6/src/io/scf.H:260:8: note: Technically the member function 'SCF::delta16' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:261:8: style:inconclusive: Technically the member function 'SCF::undelta8' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:779:11: note: Technically the member function 'SCF::undelta8' can be const.
     mira-4.9.6/src/io/scf.H:261:8: note: Technically the member function 'SCF::undelta8' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:262:8: style:inconclusive: Technically the member function 'SCF::delta8' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:796:11: note: Technically the member function 'SCF::delta8' can be const.
     mira-4.9.6/src/io/scf.H:262:8: note: Technically the member function 'SCF::delta8' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:282:8: style:inconclusive: Technically the member function 'SCF::checkSCFDataOK' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:645:11: note: Technically the member function 'SCF::checkSCFDataOK' can be const.
     mira-4.9.6/src/io/scf.H:282:8: note: Technically the member function 'SCF::checkSCFDataOK' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:283:8: style:inconclusive: Technically the member function 'SCF::correctPeakIndices' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:677:11: note: Technically the member function 'SCF::correctPeakIndices' can be const.
     mira-4.9.6/src/io/scf.H:283:8: note: Technically the member function 'SCF::correctPeakIndices' can be const.
2.17.0 mira-4.9.6/src/io/scf.H:284:8: style:inconclusive: Technically the member function 'SCF::transposeAmbiguityCodes' can be const. [functionConst]
     mira-4.9.6/src/io/scf.C:1373:11: note: Technically the member function 'SCF::transposeAmbiguityCodes' can be const.
     mira-4.9.6/src/io/scf.H:284:8: note: Technically the member function 'SCF::transposeAmbiguityCodes' can be const.
head mira-4.9.6/src/mira/assembly.C:1045:9: style: Variable 'dummy' is assigned a value that is never used. [unreadVariable]
head mira-4.9.6/src/mira/assembly.C:1873:16: performance:inconclusive: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/assembly.H:1202:8: note: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/assembly.C:1873:16: note: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/mira/assembly.C:1924:18: performance:inconclusive: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/assembly.H:1207:10: note: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/assembly.C:1924:18: note: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/mira/assembly.C:283:16: performance:inconclusive: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/assembly.H:1250:8: note: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/assembly.C:283:16: note: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/mira/assembly.H:1202:8: performance:inconclusive: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/assembly.C:1873:16: note: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/assembly.H:1202:8: note: Technically the member function 'Assembly::ssdPassInfo' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/mira/assembly.H:1207:10: performance:inconclusive: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/assembly.C:1924:18: note: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/assembly.H:1207:10: note: Technically the member function 'Assembly::lsdPassInfo' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/mira/assembly.H:1250:8: performance:inconclusive: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/assembly.C:283:16: note: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/assembly.H:1250:8: note: Technically the member function 'Assembly::dmi_dumpALine' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/mira/assembly_io.C:320:2: error: #error "Check if new seqtype needs same workaround." [preprocessorErrorDirective]
head mira-4.9.6/src/mira/assembly_misc.C:1565:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/assembly_output.C:1412:11: style: Variable 'unused' is assigned a value that is never used. [unreadVariable]
head mira-4.9.6/src/mira/assembly_pbcorrect.C:1649:8: style: Variable 'prekillconflict' is assigned a value that is never used. [unreadVariable]
head mira-4.9.6/src/mira/assembly_reduceskimhits.C:397:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/assembly_swalign.C:115:2: error: #error "This code is made for 8 sequencing types, adapt! Also adapt if other aligns are used." [preprocessorErrorDirective]
head mira-4.9.6/src/mira/contig.H:268:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/contig_analysis.C:1723:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/contig_covanalysis.C:130:15: style: Variable 'tstr' is assigned a value that is never used. [unreadVariable]
head mira-4.9.6/src/mira/contig_output.C:105:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/dynamic.C:1406:15: style:inconclusive: Technically the member function 'Dynamic::dump' can be const. [functionConst]
     mira-4.9.6/src/mira/dynamic.H:148:8: note: Technically the member function 'Dynamic::dump' can be const.
     mira-4.9.6/src/mira/dynamic.C:1406:15: note: Technically the member function 'Dynamic::dump' can be const.
head mira-4.9.6/src/mira/dynamic.C:153:15: performance:inconclusive: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/dynamic.H:124:8: note: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/dynamic.C:153:15: note: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace).
head mira-4.9.6/src/mira/dynamic.C:1540:15: style:inconclusive: Technically the member function 'Dynamic::coutWhatWasGiven' can be const. [functionConst]
     mira-4.9.6/src/mira/dynamic.H:151:8: note: Technically the member function 'Dynamic::coutWhatWasGiven' can be const.
     mira-4.9.6/src/mira/dynamic.C:1540:15: note: Technically the member function 'Dynamic::coutWhatWasGiven' can be const.
head mira-4.9.6/src/mira/dynamic.C:632:15: style:inconclusive: Technically the member function 'Dynamic::discard' can be const. [functionConst]
     mira-4.9.6/src/mira/dynamic.H:141:8: note: Technically the member function 'Dynamic::discard' can be const.
     mira-4.9.6/src/mira/dynamic.C:632:15: note: Technically the member function 'Dynamic::discard' can be const.
head mira-4.9.6/src/mira/dynamic.C:660:16: performance:inconclusive: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/dynamic.H:122:9: note: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/dynamic.C:660:16: note: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/mira/dynamic.H:122:9: performance:inconclusive: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/dynamic.C:660:16: note: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/dynamic.H:122:9: note: Technically the member function 'Dynamic::sequenceCopy' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/mira/dynamic.H:124:8: performance:inconclusive: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace). [functionStatic]
     mira-4.9.6/src/mira/dynamic.C:153:15: note: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace).
     mira-4.9.6/src/mira/dynamic.H:124:8: note: Technically the member function 'Dynamic::matinit' can be static (but you may consider moving to unnamed namespace).
2.17.0 mira-4.9.6/src/mira/dynamic.H:141:8: style:inconclusive: Technically the member function 'Dynamic::discard' can be const. [functionConst]
     mira-4.9.6/src/mira/dynamic.C:632:15: note: Technically the member function 'Dynamic::discard' can be const.
     mira-4.9.6/src/mira/dynamic.H:141:8: note: Technically the member function 'Dynamic::discard' can be const.
2.17.0 mira-4.9.6/src/mira/dynamic.H:148:8: style:inconclusive: Technically the member function 'Dynamic::dump' can be const. [functionConst]
     mira-4.9.6/src/mira/dynamic.C:1406:15: note: Technically the member function 'Dynamic::dump' can be const.
     mira-4.9.6/src/mira/dynamic.H:148:8: note: Technically the member function 'Dynamic::dump' can be const.
2.17.0 mira-4.9.6/src/mira/dynamic.H:151:8: style:inconclusive: Technically the member function 'Dynamic::coutWhatWasGiven' can be const. [functionConst]
     mira-4.9.6/src/mira/dynamic.C:1540:15: note: Technically the member function 'Dynamic::coutWhatWasGiven' can be const.
     mira-4.9.6/src/mira/dynamic.H:151:8: note: Technically the member function 'Dynamic::coutWhatWasGiven' can be const.
head mira-4.9.6/src/mira/hashstats_sdbg.C:535:17: style: Variable 'seq' is assigned a value that is never used. [unreadVariable]
head mira-4.9.6/src/mira/hashstats_sdbg.C:629:17: style: Variable 'seq' is assigned a value that is never used. [unreadVariable]
head mira-4.9.6/src/mira/parameters.C:405:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/preventinitfiasco.C:268:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/read.C:1693:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/readgrouplib.C:217:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/mira/skim.C:2262:2: error: #error "This code is made for 8 sequencing types, adapt!" [preprocessorErrorDirective]
head mira-4.9.6/src/modules/mod_tagsnp.C:72:8: style: Variable 'dooutput' is assigned a value that is never used. [unreadVariable]
head mira-4.9.6/src/util/misc.C:327:10: style: Variable 'needcode' is assigned a value that is never used. [unreadVariable]
head parameters_flexer.cc:7954:60: style: C-style pointer casting [cstyleCast]
head parameters_flexer.cc:8406:41: style: C-style pointer casting [cstyleCast]


DONE