2025-05-06 03:04 ftp://ftp.de.debian.org/debian/pool/main/m/macromoleculebuilder/macromoleculebuilder_4.0.0+dfsg.orig.tar.xz cppcheck-options: --library=posix --library=gnu --library=bsd --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j3 platform: Linux-6.8.0-1022-oracle-aarch64-with-glibc2.39 python: 3.12.3 client-version: 1.3.67 compiler: g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 cppcheck: head 2.17.0 head-info: 581f101 (2025-05-05 21:13:30 +0200) count: 975 938 elapsed-time: 2.0 2.1 head-timing-info: old-timing-info: head results: MMB-4.0.0/parameterization/src/generate-base-pair-transform.cpp:29:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:30:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:36:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:68:87: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable atomSpringVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:87:96: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable atomSpringVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:115:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:195:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:202:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:220:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerClass [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:261:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:269:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:280:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:291:63: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerClass [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:389:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerClass [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:442:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:450:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:459:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:472:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] MMB-4.0.0/parameterization/src/generate-base-pair-transform.cpp:22:9: style: The scope of the variable 'outputFileName' can be reduced. [variableScope] MMB-4.0.0/parameterization/src/generate-base-pair-transform.cpp:22:9: style: Variable 'outputFileName' can be declared as pointer to const [constVariablePointer] MMB-4.0.0/parameterization/src/generate-base-pair-transform.cpp:22:24: style: Variable 'outputFileName' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/parameterization/src/generate-base-pair-transform.cpp:44:55: style: Variable 'outputFileName' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/extras/WinMMB/src/main.c:126:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable NONCLIENTMETRICSW [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:143:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FORMAT_MESSAGE_ALLOCATE_BUFFER [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:191:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HEAP_GENERATE_EXCEPTIONS [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:215:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFINITE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:256:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HEAP_GENERATE_EXCEPTIONS [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:276:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable GENERIC_READ [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:299:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HEAP_GENERATE_EXCEPTIONS [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:336:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HEAP_GENERATE_EXCEPTIONS [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:377:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFINITE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:416:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFINITE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:436:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HEAP_GENERATE_EXCEPTIONS [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:451:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MAX_PATH [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:503:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:777:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:826:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:942:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MB_OK [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1080:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable MB_OK [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1095:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable OPENFILENAMEW [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1129:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BIF_RETURNONLYFSDIRS [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1162:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1192:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFINITE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1243:65: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BST_UNCHECKED [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1253:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HEAP_GENERATE_EXCEPTIONS [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1260:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFINITE [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1276:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WM_SETFONT [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1374:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WNDCLASSEXW [valueFlowBailoutIncompleteVar] MMB-4.0.0/extras/WinMMB/src/main.c:1410:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ICC_WIN95_CLASSES [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BaseInteractionParameterReader.cpp:67:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbResidueName1 [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BaseInteractionParameterReader.cpp:119:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbResidueName1 [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BaseInteractionParameterReader.cpp:127:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbResidueName1 [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BaseInteractionParameterReader.cpp:140:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable in [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BaseInteractionParameterReader.cpp:236:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BaseInteractionParameterReader.cpp:261:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myLeontisWesthofBondRow [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BaseInteractionParameterReader.cpp:327:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/AtomSpringContainer.cpp:65:24: style: Variable 'myExtension' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/AtomSpringContainer.cpp:65:12: style: Variable 'myExtension' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/AtomSpringContainer.cpp:79:39: style: Unused variable: coord0 [unusedVariable] MMB-4.0.0/src/AtomSpringContainer.cpp:80:39: style: Unused variable: coord1 [unusedVariable] MMB-4.0.0/src/AtomSpringContainer.cpp:289:80: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator] MMB-4.0.0/src/AtomSpringContainer.cpp:469:92: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator] MMB-4.0.0/src/BasePairContainer.cpp:29:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:47:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myBasePairVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:78:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myBasePairVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:95:118: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RNA [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:145:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myBasePairVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:175:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:182:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:211:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:224:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:232:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:288:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:323:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:371:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:378:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myBasePairVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BasePairContainer.cpp:70:9: style: Throwing a copy of the caught exception instead of rethrowing the original exception. [exceptRethrowCopy] MMB-4.0.0/extras/WinMMB/src/main.c:168:6: style: Condition 'buf' is always false [knownConditionTrueFalse] MMB-4.0.0/extras/WinMMB/src/main.c:139:15: note: Assignment 'buf=NULL', assigned value is 0 MMB-4.0.0/extras/WinMMB/src/main.c:168:6: note: Condition 'buf' is always false MMB-4.0.0/extras/WinMMB/src/main.c:151:46: error: Null pointer dereference [nullPointer] MMB-4.0.0/extras/WinMMB/src/main.c:156:38: error: Null pointer dereference [nullPointer] MMB-4.0.0/src/CCP4Reader.cpp:30:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/CCP4Reader.cpp:51:9: warning: If memory allocation fails, then there is a possible null pointer dereference: xten [nullPointerOutOfMemory] MMB-4.0.0/src/CCP4Reader.cpp:50:28: note: Assuming allocation function fails MMB-4.0.0/src/CCP4Reader.cpp:50:14: note: Assignment 'xten=(char*)std::malloc(header.nsymbt)', assigned value is 0 MMB-4.0.0/src/CCP4Reader.cpp:51:9: note: Null pointer dereference MMB-4.0.0/src/CCP4Reader.cpp:40:12: style: C-style pointer casting [cstyleCast] MMB-4.0.0/src/CCP4Reader.cpp:50:14: style: C-style pointer casting [cstyleCast] MMB-4.0.0/src/CCP4Reader.cpp:66:13: style: C-style pointer casting [cstyleCast] MMB-4.0.0/src/CCP4Reader.cpp:72:13: style: C-style pointer casting [cstyleCast] MMB-4.0.0/src/CCP4Reader.cpp:72:9: style: Variable 'y' can be declared as pointer to const [constVariablePointer] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:42:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:97:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable verbose [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:287:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable verbose [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/CifOutput.cpp:21:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RNA [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/CifOutput.cpp:48:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable blocks [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:19:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:39:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:64:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:70:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:79:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:89:105: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WeldToAtom [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:117:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:131:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:148:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ConstraintContainer.cpp:220:179: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WeldToAtom [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:19:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:29:122: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RNA [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:71:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:78:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:106:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:117:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable contactWithinVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:179:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:184:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:190:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:221:123: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RNA [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:276:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:284:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:316:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:45:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:135:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Any [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:194:178: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable proteinCapping [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:206:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myBiopolymer [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:227:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:245:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:263:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:269:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:279:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable sequence [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:283:8: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:335:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:350:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:362:106: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:370:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable chainID [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:381:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable sequence [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:404:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:420:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable originalSequence [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:426:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:438:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:442:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable proteinCapping [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:462:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable proteinCapping [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:468:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable firstResidueMobilizerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:475:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable firstResidueMobilizerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:482:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:493:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:517:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:548:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:572:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:583:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:598:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:622:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:643:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:674:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:829:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:837:79: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Rigid [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:865:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:961:74: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable proteinCapping [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:967:106: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable proteinCapping [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:974:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:978:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:988:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myRenumberPdbResidues [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1028:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1048:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1132:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable atomName [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1154:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1209:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1282:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1330:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1345:73: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable endl [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1368:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1396:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1412:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1498:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1520:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerType [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1541:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myBiopolymer [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1545:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable myBiopolymer [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1585:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1724:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1751:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Position [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1818:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1854:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1931:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1974:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2034:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2044:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2053:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2075:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2091:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Deg2Rad [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2105:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Deg2Rad [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2119:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Deg2Rad [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2143:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable residueIDVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2155:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable residueIDVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2173:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2192:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbFileName [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2196:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbFileName [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2201:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbStructure [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2206:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbStructure [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2210:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable loadFromPdb [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2213:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable loadFromPdb [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2221:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2258:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable activePhysics [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2261:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable activePhysics [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2281:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2315:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2356:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2391:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerClassMap [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2441:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable pdbStructureMap [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2452:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2492:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2626:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2650:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerClassMap [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2666:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2672:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2686:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2716:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BasePairIsTwoTransformForce [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2758:65: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RNA [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2794:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2807:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Dynamics [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2859:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2903:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2945:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FirstBPChain [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3029:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable chain1 [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3037:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3072:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3120:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable position [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3141:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3198:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3339:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3447:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3562:68: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable chain [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3575:121: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerChainID [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3619:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3624:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerClassMap [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3631:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable biopolymerClassMap [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3637:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3700:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3759:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3884:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4026:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable WARNING [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4064:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CoupledCoordinate [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4084:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4132:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4153:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4167:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4199:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4214:63: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4230:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4260:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4276:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4296:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4309:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4334:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4343:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4361:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4377:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4459:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4477:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mutationVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4492:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4513:90: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Protein [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4543:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4568:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4642:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4681:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4706:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable position [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:318:13: style: Statements following 'return' will never be executed. [unreachableCode] MMB-4.0.0/src/BiopolymerClass.cpp:4747:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable position [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:323:5: style: Statements following 'return' will never be executed. [unreachableCode] MMB-4.0.0/src/BiopolymerClass.cpp:4781:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:4814:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:3325:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ContactContainer.cpp:39:23: style: Variable 'myEndCapsOn' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/ContactContainer.cpp:40:20: style: Variable 'myEndCapsOn' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/ContactContainer.cpp:139:102: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator] MMB-4.0.0/src/ContactContainer.cpp:144:102: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator] MMB-4.0.0/src/DensityContainer.cpp:19:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityContainer.cpp:42:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityForce.cpp:31:159: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable densityFitPhosphates [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityForce.cpp:56:160: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable densityFitPhosphates [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityForce.cpp:68:26: style: Local variable 'i' shadows outer variable [shadowVariable] MMB-4.0.0/src/DensityForce.cpp:51:18: note: Shadowed declaration MMB-4.0.0/src/DensityForce.cpp:68:26: note: Shadow variable MMB-4.0.0/src/DensityMap.cpp:60:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:72:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:105:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:162:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:205:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:282:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable noiseScale [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:319:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable noiseTemperature [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:395:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:432:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:464:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:577:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:673:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:688:63: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable out [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:835:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:1074:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:1078:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:1082:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:1128:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable m_gridPoints [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DensityMap.cpp:1138:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable m_gridPoints [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:51:21: style:inconclusive: Boolean expression 'c=='A'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:57:18: style:inconclusive: Boolean expression 'c=='A'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:59:18: style:inconclusive: Boolean expression 'c=='U'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:67:18: style:inconclusive: Boolean expression 'c=='A'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:69:18: style:inconclusive: Boolean expression 'c=='T'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:77:18: style:inconclusive: Boolean expression 'c=='C'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:79:18: style:inconclusive: Boolean expression 'c=='I'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:86:18: style:inconclusive: Boolean expression 'c=='M'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:88:18: style:inconclusive: Boolean expression 'c=='A'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:95:18: style:inconclusive: Boolean expression 'c=='G'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:97:18: style:inconclusive: Boolean expression 'c=='T'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:104:18: style:inconclusive: Boolean expression 'c=='R'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:106:18: style:inconclusive: Boolean expression 'c=='W'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:113:18: style:inconclusive: Boolean expression 'c=='D'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClass.cpp:116:18: style:inconclusive: Boolean expression 'c=='K'' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:260:27: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:259:34: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:260:27: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:261:27: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:260:27: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:261:27: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:365:34: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:363:34: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:365:34: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:367:34: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:365:34: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:367:34: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:411:44: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:410:43: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:411:44: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:416:43: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:415:43: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:416:43: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:417:43: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:416:43: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:417:43: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:451:38: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:450:38: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:451:38: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:452:38: style: The if condition is the same as the previous if condition [duplicateCondition] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:451:38: note: First condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:452:38: note: Second condition MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:90:16: style: The scope of the variable 'forceConstant' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:91:16: style: The scope of the variable 'torqueConstant' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:92:16: style: The scope of the variable 'dutyCycle' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:93:16: style: The scope of the variable 'scrubberPeriod' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:94:16: style: The scope of the variable 'cutoffRadius' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:277:16: style: The scope of the variable 'forceConstant' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:278:16: style: The scope of the variable 'torqueConstant' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:279:16: style: The scope of the variable 'dutyCycle' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:280:16: style: The scope of the variable 'scrubberPeriod' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:281:16: style: The scope of the variable 'cutoffRadius' can be reduced. [variableScope] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:215:31: style: Local variable 'C' shadows outer variable [shadowVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:168:26: note: Shadowed declaration MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:215:31: note: Shadow variable MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:333:18: style: Local variable 'station1' shadows outer variable [shadowVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:316:18: note: Shadowed declaration MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:333:18: note: Shadow variable MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:334:18: style: Local variable 'station2' shadows outer variable [shadowVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:317:18: note: Shadowed declaration MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:334:18: note: Shadow variable MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:444:22: style: Local variable 'rotation1' shadows outer variable [shadowVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:318:22: note: Shadowed declaration MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:444:22: note: Shadow variable MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:445:22: style: Local variable 'rotation2' shadows outer variable [shadowVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: Shadowed declaration MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:445:22: note: Shadow variable MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:198:24: style: Variable 'B' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:231:24: style: Variable 'B' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:323:16: style: Variable 'dutyCycle' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/BiopolymerClassTwoTransformForces.cpp:324:28: style: Variable 'scrubberPeriod' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/BiopolymerClass.cpp:2825:16: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled] MMB-4.0.0/src/BiopolymerClass.cpp:2830:48: style: Obsolete function 'std::asctime' called. It is recommended to use 'strftime' instead. [prohibitedasctimeCalled] MMB-4.0.0/src/DisplacementContainer.cpp:20:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/DisplacementContainer.cpp:38:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1582:24: style: Expression is always true because 'else if' condition is opposite to previous condition at line 1580. [multiCondition] MMB-4.0.0/src/BiopolymerClass.cpp:1580:17: note: first condition MMB-4.0.0/src/BiopolymerClass.cpp:1582:24: note: else if condition is opposite to first condition MMB-4.0.0/src/BiopolymerClass.cpp:51:21: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:57:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:58:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:59:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:67:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:68:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:69:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:77:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:78:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:79:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:86:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:87:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:88:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:95:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:96:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:97:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:104:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:105:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:106:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:113:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:114:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:115:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/BiopolymerClass.cpp:116:18: style: Boolean result is used in bitwise operation. Clarify expression with parentheses. [clarifyCondition] MMB-4.0.0/src/ElectrostaticPotentialGridForce.cpp:38:128: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable electroDensityForceConstant [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ElectrostaticPotentialGridForce.cpp:65:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable cout [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/ElectrostaticPotentialGridForce.cpp:34:35: style: Variable 'densitySum' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/ElectrostaticPotentialGridForce.cpp:41:32: style: Variable 'densitySum' is assigned a value that is never used. [unreadVariable] MMB-4.0.0/src/MMBLogger.cpp:26:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __IMPOSSIBLE__ [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MMBLogger.cpp:40:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable s_me [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MMBLogger.cpp:48:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _writeMutex [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MMBLogger.cpp:55:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _output [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MMBLogger.cpp:68:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _output [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MMBLogger.cpp:84:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _newlinesSinceFlush [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MMBLogger.cpp:93:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _loggingSeverity [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MMBLogger.cpp:97:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable _writeMutex [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:2467:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:2466:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:2467:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:3596:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:3595:76: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:3596:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:3604:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:3603:76: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:3604:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:3868:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:3867:76: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:3868:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4081:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4080:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4081:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4095:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4094:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4095:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4103:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4102:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4103:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4110:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4109:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4110:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4117:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4116:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4117:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4170:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4169:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4170:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4257:37: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4256:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4257:37: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4273:37: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4272:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4273:37: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4295:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4294:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4295:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4324:37: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4323:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4324:37: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:4443:36: style: Redundant initialization for 'biopolymerClassMapIterator'. The initialized value is overwritten before it is read. [redundantInitialization] MMB-4.0.0/src/BiopolymerClass.cpp:4442:77: note: biopolymerClassMapIterator is initialized MMB-4.0.0/src/BiopolymerClass.cpp:4443:36: note: biopolymerClassMapIterator is overwritten MMB-4.0.0/src/BiopolymerClass.cpp:662:12: style: The scope of the variable 'maxObservedSinePlaneDeviation' can be reduced. [variableScope] MMB-4.0.0/src/MobilizerContainer.cpp:35:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:52:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:68:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:104:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable residueStretchVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:176:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable first [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:237:94: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable residueStretchVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:264:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DEBUG [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:333:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CRITICAL [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:346:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable Protein [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:359:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable mobilizerWithinVector [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/MobilizerContainer.cpp:368:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable INFO [valueFlowBailoutIncompleteVar] MMB-4.0.0/src/BiopolymerClass.cpp:1126:57: style: Parameter 'myBiopolymerClass' can be declared as reference to const [constParameterReference] MMB-4.0.0/src/MobilizerContainer.cpp:160:52: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator] MMB-4.0.0/src/MobilizerContainer.cpp:187:56: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator] MMB-4.0.0/src/MobilizerContainer.cpp:217:64: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator] MMB-4.0.0/src/DensityMap.cpp:156:18: style: Expression 'exp(x) - 1' can be replaced by 'expm1(x)' to avoid loss of precision. [unpreciseMathCall] MMB-4.0.0/src/DensityMap.cpp:226:33: style: Condition 'xIndex2