2021-09-11 08:19
ftp://ftp.de.debian.org/debian/pool/main/libs/libstatgen/libstatgen_1.0.14.orig.tar.gz
cppcheck-options: --library=posix --library=gnu --library=googletest --library=zlib -j1 --showtime=top5 --check-library --inconclusive --enable=style,information --template=daca2 -rp=temp -D__GNUC__ --platform=unix64 temp
platform: Linux-5.4.0-84-generic-x86_64-with-glibc2.29
python: 3.8.10
client-version: 1.3.12
compiler: g++ (Ubuntu 9.3.0-17ubuntu1~20.04) 9.3.0
cppcheck: head 2.5
head-info: 9ece849d8 (2021-09-09 20:43:46 +0200)
count: 818 811
elapsed-time: 42.5 55.8
head-timing-info:
 Tokenizer::simplifyTokens1: 39.798s (avg. 0.25349s - 157 result(s))
 Tokenizer::simplifyTokens1::ValueFlow: 28.7352s (avg. 0.183027s - 157 result(s))
 Tokenizer::simplifyTokens1::createSymbolDatabase: 9.19258s (avg. 0.0585515s - 157 result(s))
 Tokenizer::createTokens: 0.589077s (avg. 0.00363628s - 162 result(s))
 Other::runChecks: 0.294566s (avg. 0.00187622s - 157 result(s))
 Overall time: 80.5844s

old-timing-info:
 Tokenizer::simplifyTokens1: 53.1597s (avg. 0.338597s - 157 result(s))
 Tokenizer::simplifyTokens1::ValueFlow: 42.538s (avg. 0.270943s - 157 result(s))
 Tokenizer::simplifyTokens1::createSymbolDatabase: 8.7732s (avg. 0.0558802s - 157 result(s))
 Tokenizer::createTokens: 0.595262s (avg. 0.00367446s - 162 result(s))
 Tokenizer::simplifyTokens1::setValueType: 0.280137s (avg. 0.00178431s - 157 result(s))
 Overall time: 107.261s

head results:
libStatGen-1.0.14/bam/BamIndex.cpp:431:31: style: The if condition is the same as the previous if condition [duplicateCondition]
libStatGen-1.0.14/bam/BamIndex.cpp:427:31: note: First condition
libStatGen-1.0.14/bam/BamIndex.cpp:431:31: note: Second condition
libStatGen-1.0.14/bam/BamIndex.cpp:405:28: style: Unused variable: refsToProcess [unusedVariable]
libStatGen-1.0.14/bam/SamFileHeader.h:423:17: style:inconclusive: Technically the member function 'SamFileHeader::getErrorMessage' can be const. [functionConst]
libStatGen-1.0.14/bam/SamFileHeader.h:438:13: performance:inconclusive: Technically the member function 'SamFileHeader::makeKey' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/bam/SamRecord.h:68:5: style: Class 'SamRecord' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/bam/SamHeaderHD.h:39:30: style: The function 'createCopy' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/SamHeaderRecord.h:49:30: note: Virtual function in base class
libStatGen-1.0.14/bam/SamHeaderHD.h:39:30: note: Function in derived class
libStatGen-1.0.14/bam/SamHeaderSQ.h:37:30: style: The function 'createCopy' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/SamHeaderRecord.h:49:30: note: Virtual function in base class
libStatGen-1.0.14/bam/SamHeaderSQ.h:37:30: note: Function in derived class
libStatGen-1.0.14/bam/SamHeaderRG.h:37:30: style: The function 'createCopy' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/SamHeaderRecord.h:49:30: note: Virtual function in base class
libStatGen-1.0.14/bam/SamHeaderRG.h:37:30: note: Function in derived class
libStatGen-1.0.14/bam/SamHeaderPG.h:38:30: style: The function 'createCopy' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/SamHeaderRecord.h:49:30: note: Virtual function in base class
libStatGen-1.0.14/bam/SamHeaderPG.h:38:30: note: Function in derived class
libStatGen-1.0.14/bam/BamInterface.h:32:18: style: The function 'readHeader' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:36:18: note: Virtual function in base class
libStatGen-1.0.14/bam/BamInterface.h:32:18: note: Function in derived class
libStatGen-1.0.14/bam/BamInterface.h:37:18: style: The function 'writeHeader' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:42:18: note: Virtual function in base class
libStatGen-1.0.14/bam/BamInterface.h:37:18: note: Function in derived class
libStatGen-1.0.14/bam/BamInterface.h:42:18: style: The function 'readRecord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:49:18: note: Virtual function in base class
libStatGen-1.0.14/bam/BamInterface.h:42:18: note: Function in derived class
libStatGen-1.0.14/bam/BamInterface.h:48:31: style: The function 'writeRecord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:56:31: note: Virtual function in base class
libStatGen-1.0.14/bam/BamInterface.h:48:31: note: Function in derived class
libStatGen-1.0.14/bam/BamInterface.cpp:33:42: style:inconclusive: Function 'readHeader' argument 3 names different: declaration 'samStatus' definition 'status'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/BamInterface.h:33:40: note: Function 'readHeader' argument 3 names different: declaration 'samStatus' definition 'status'.
libStatGen-1.0.14/bam/BamInterface.cpp:33:42: note: Function 'readHeader' argument 3 names different: declaration 'samStatus' definition 'status'.
libStatGen-1.0.14/bam/BamInterface.cpp:137:43: style:inconclusive: Function 'writeHeader' argument 3 names different: declaration 'samStatus' definition 'status'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/BamInterface.h:38:41: note: Function 'writeHeader' argument 3 names different: declaration 'samStatus' definition 'status'.
libStatGen-1.0.14/bam/BamInterface.cpp:137:43: note: Function 'writeHeader' argument 3 names different: declaration 'samStatus' definition 'status'.
libStatGen-1.0.14/bam/CigarHelper.cpp:259:14: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
libStatGen-1.0.14/bam/CigarHelper.cpp:267:9: note: Found duplicate branches for 'if' and 'else'.
libStatGen-1.0.14/bam/CigarHelper.cpp:259:14: note: Found duplicate branches for 'if' and 'else'.
libStatGen-1.0.14/bam/CigarHelper.cpp:235:21: style: The scope of the variable 'numKeep' can be reduced. [variableScope]
libStatGen-1.0.14/bam/CigarHelper.cpp:235:29: style: Variable 'numKeep' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/PileupElementBaseQual.h:34:18: style: The function 'addEntry' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/PileupElement.h:42:18: note: Virtual function in base class
libStatGen-1.0.14/bam/PileupElementBaseQual.h:34:18: note: Function in derived class
libStatGen-1.0.14/bam/PileupElementBaseQual.h:38:18: style: The function 'analyze' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/PileupElement.h:45:18: note: Virtual function in base class
libStatGen-1.0.14/bam/PileupElementBaseQual.h:38:18: note: Function in derived class
libStatGen-1.0.14/bam/PileupElementBaseQual.h:41:18: style: The function 'reset' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/PileupElement.h:48:18: note: Virtual function in base class
libStatGen-1.0.14/bam/PileupElementBaseQual.h:41:18: note: Function in derived class
libStatGen-1.0.14/bam/SamFile.h:59:5: style: Class 'SamFile' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/bam/SamFile.h:463:5: style: Class 'SamFileReader' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/bam/SamFile.h:492:5: style: Class 'SamFileWriter' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/bam/SamRecordPool.h:33:5: style: Class 'SamRecordPool' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/bam/SamCoordOutput.h:34:5: style: Class 'SamCoordOutput' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/bam/SamFile.h:197:14: style:inconclusive: Technically the member function 'SamFile::GetCurrentRecordCount' can be const. [functionConst]
libStatGen-1.0.14/bam/SamFile.cpp:676:19: note: Technically the member function 'SamFile::GetCurrentRecordCount' can be const.
libStatGen-1.0.14/bam/SamFile.h:197:14: note: Technically the member function 'SamFile::GetCurrentRecordCount' can be const.
libStatGen-1.0.14/bam/SamFile.h:332:21: style:inconclusive: Technically the member function 'SamFile::GetBamIndex' can be const. [functionConst]
libStatGen-1.0.14/bam/SamFile.cpp:903:26: note: Technically the member function 'SamFile::GetBamIndex' can be const.
libStatGen-1.0.14/bam/SamFile.h:332:21: note: Technically the member function 'SamFile::GetBamIndex' can be const.
libStatGen-1.0.14/bam/SamFile.h:370:16: performance:inconclusive: Technically the member function 'SamFile::getSortOrderFromHeader' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/bam/SamFile.cpp:1134:30: note: Technically the member function 'SamFile::getSortOrderFromHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamFile.h:370:16: note: Technically the member function 'SamFile::getSortOrderFromHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamInterface.h:31:18: style: The function 'readHeader' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:36:18: note: Virtual function in base class
libStatGen-1.0.14/bam/SamInterface.h:31:18: note: Function in derived class
libStatGen-1.0.14/bam/SamInterface.h:35:18: style: The function 'writeHeader' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:42:18: note: Virtual function in base class
libStatGen-1.0.14/bam/SamInterface.h:35:18: note: Function in derived class
libStatGen-1.0.14/bam/SamInterface.h:40:18: style: The function 'readRecord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:49:18: note: Virtual function in base class
libStatGen-1.0.14/bam/SamInterface.h:40:18: note: Function in derived class
libStatGen-1.0.14/bam/SamInterface.h:46:31: style: The function 'writeRecord' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/bam/GenericSamInterface.h:56:31: note: Virtual function in base class
libStatGen-1.0.14/bam/SamInterface.h:46:31: note: Function in derived class
libStatGen-1.0.14/bam/SamFile.cpp:512:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/bam/SamFile.cpp:522:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/bam/SamFile.cpp:1271:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/bam/SamFile.cpp:1281:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/bam/SamFile.cpp:1290:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/bam/SamFile.cpp:300:40: style:inconclusive: Function 'ReadBamIndex' argument 1 names different: declaration 'filename' definition 'bamIndexFilename'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamFile.h:116:36: note: Function 'ReadBamIndex' argument 1 names different: declaration 'filename' definition 'bamIndexFilename'.
libStatGen-1.0.14/bam/SamFile.cpp:300:40: note: Function 'ReadBamIndex' argument 1 names different: declaration 'filename' definition 'bamIndexFilename'.
libStatGen-1.0.14/bam/SamFileHeader.h:438:13: style: Unused private function: 'SamFileHeader::makeKey' [unusedPrivateFunction]
libStatGen-1.0.14/bam/SamFileHeader.h:253:17: style:inconclusive: Technically the member function 'SamFileHeader::getHDTagValue' can be const. [functionConst]
libStatGen-1.0.14/bam/SamFileHeader.cpp:683:28: note: Technically the member function 'SamFileHeader::getHDTagValue' can be const.
libStatGen-1.0.14/bam/SamFileHeader.h:253:17: note: Technically the member function 'SamFileHeader::getHDTagValue' can be const.
libStatGen-1.0.14/bam/SamFileHeader.h:409:10: style:inconclusive: Technically the member function 'SamFileHeader::appendCommentLines' can be const. [functionConst]
libStatGen-1.0.14/bam/SamFileHeader.cpp:972:21: note: Technically the member function 'SamFileHeader::appendCommentLines' can be const.
libStatGen-1.0.14/bam/SamFileHeader.h:409:10: note: Technically the member function 'SamFileHeader::appendCommentLines' can be const.
libStatGen-1.0.14/bam/SamFileHeader.cpp:533:31: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:536:31: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:539:31: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:542:31: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:586:23: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:623:23: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:660:23: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:699:23: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:717:23: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:733:23: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:777:12: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:784:12: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamFileHeader.cpp:791:12: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamHeaderHD.h:32:17: style:inconclusive: Technically the member function 'SamHeaderHD::getSortOrder' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderHD.cpp:37:26: note: Technically the member function 'SamHeaderHD::getSortOrder' can be const.
libStatGen-1.0.14/bam/SamHeaderHD.h:32:17: note: Technically the member function 'SamHeaderHD::getSortOrder' can be const.
libStatGen-1.0.14/bam/SamHeaderRecord.cpp:21:18: warning: Member variable 'SamHeaderRecord::myType' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/bam/SamHeaderRecord.h:82:10: style:inconclusive: Technically the member function 'SamHeaderRecord::isActiveHeaderRecord' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderRecord.cpp:301:23: note: Technically the member function 'SamHeaderRecord::isActiveHeaderRecord' can be const.
libStatGen-1.0.14/bam/SamHeaderRecord.h:82:10: note: Technically the member function 'SamHeaderRecord::isActiveHeaderRecord' can be const.
libStatGen-1.0.14/bam/SamHeaderRecord.h:85:17: style:inconclusive: Technically the member function 'SamHeaderRecord::getTypeString' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderRecord.cpp:308:30: note: Technically the member function 'SamHeaderRecord::getTypeString' can be const.
libStatGen-1.0.14/bam/SamHeaderRecord.h:85:17: note: Technically the member function 'SamHeaderRecord::getTypeString' can be const.
libStatGen-1.0.14/bam/SamHeaderRecord.h:88:25: style:inconclusive: Technically the member function 'SamHeaderRecord::getType' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderRecord.cpp:315:55: note: Technically the member function 'SamHeaderRecord::getType' can be const.
libStatGen-1.0.14/bam/SamHeaderRecord.h:88:25: note: Technically the member function 'SamHeaderRecord::getType' can be const.
libStatGen-1.0.14/bam/SamHeaderRecord.cpp:239:10: style: The scope of the variable 'writtenHeader' can be reduced. [variableScope]
libStatGen-1.0.14/bam/SamHeaderTag.h:35:10: style:inconclusive: Technically the member function 'SamHeaderTag::getTagString' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderTag.cpp:40:20: note: Technically the member function 'SamHeaderTag::getTagString' can be const.
libStatGen-1.0.14/bam/SamHeaderTag.h:35:10: note: Technically the member function 'SamHeaderTag::getTagString' can be const.
libStatGen-1.0.14/bam/SamHeaderTag.h:44:17: style:inconclusive: Technically the member function 'SamHeaderTag::getTag' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderTag.cpp:74:27: note: Technically the member function 'SamHeaderTag::getTag' can be const.
libStatGen-1.0.14/bam/SamHeaderTag.h:44:17: note: Technically the member function 'SamHeaderTag::getTag' can be const.
libStatGen-1.0.14/bam/SamHeaderTag.h:47:17: style:inconclusive: Technically the member function 'SamHeaderTag::getValue' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderTag.cpp:81:27: note: Technically the member function 'SamHeaderTag::getValue' can be const.
libStatGen-1.0.14/bam/SamHeaderTag.h:47:17: note: Technically the member function 'SamHeaderTag::getValue' can be const.
libStatGen-1.0.14/bam/SamHeaderTag.h:50:10: style:inconclusive: Technically the member function 'SamHeaderTag::hasValue' can be const. [functionConst]
libStatGen-1.0.14/bam/SamHeaderTag.cpp:88:20: note: Technically the member function 'SamHeaderTag::hasValue' can be const.
libStatGen-1.0.14/bam/SamHeaderTag.h:50:10: note: Technically the member function 'SamHeaderTag::hasValue' can be const.
libStatGen-1.0.14/bam/SamInterface.h:52:10: style: Unused private function: 'SamInterface::ParseHeaderLine' [unusedPrivateFunction]
libStatGen-1.0.14/bam/SamQuerySeqWithRefHelper.h:39:10: style:inconclusive: Technically the member function 'SamSingleBaseMatchInfo::getType' can be const. [functionConst]
libStatGen-1.0.14/bam/SamQuerySeqWithRefHelper.cpp:218:54: note: Technically the member function 'SamSingleBaseMatchInfo::getType' can be const.
libStatGen-1.0.14/bam/SamQuerySeqWithRefHelper.h:39:10: note: Technically the member function 'SamSingleBaseMatchInfo::getType' can be const.
libStatGen-1.0.14/bam/SamQuerySeqWithRefHelper.h:42:13: style:inconclusive: Technically the member function 'SamSingleBaseMatchInfo::getQueryIndex' can be const. [functionConst]
libStatGen-1.0.14/bam/SamQuerySeqWithRefHelper.cpp:224:33: note: Technically the member function 'SamSingleBaseMatchInfo::getQueryIndex' can be const.
libStatGen-1.0.14/bam/SamQuerySeqWithRefHelper.h:42:13: note: Technically the member function 'SamSingleBaseMatchInfo::getQueryIndex' can be const.
libStatGen-1.0.14/bam/SamQuerySeqWithRefHelper.cpp:117:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/bam/SamRecord.cpp:2520:27: style:inconclusive: Boolean expression 'readNameLenChange' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
libStatGen-1.0.14/bam/SamRecord.cpp:2520:44: style:inconclusive: Boolean expression 'readLenChange' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
libStatGen-1.0.14/bam/SamRecord.cpp:2531:32: style:inconclusive: Boolean expression 'myIsQualityBufferValid' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
libStatGen-1.0.14/bam/SamRecord.cpp:2532:27: style:inconclusive: Boolean expression 'readNameLenChange' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
libStatGen-1.0.14/bam/SamRecord.cpp:2532:44: style:inconclusive: Boolean expression 'readLenChange' is used in bitwise operation. Did you mean '||'? [bitwiseOnBoolean]
libStatGen-1.0.14/bam/SamRecord.h:625:22: style:inconclusive: Technically the member function 'SamRecord::getStatus' can be const. [functionConst]
libStatGen-1.0.14/bam/SamRecord.cpp:2391:29: note: Technically the member function 'SamRecord::getStatus' can be const.
libStatGen-1.0.14/bam/SamRecord.h:625:22: note: Technically the member function 'SamRecord::getStatus' can be const.
libStatGen-1.0.14/bam/SamRecord.h:718:10: performance:inconclusive: Technically the member function 'SamRecord::getTypeFromKey' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/bam/SamRecord.cpp:3460:17: note: Technically the member function 'SamRecord::getTypeFromKey' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamRecord.h:718:10: note: Technically the member function 'SamRecord::getTypeFromKey' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamRecord.h:719:10: performance:inconclusive: Technically the member function 'SamRecord::getTag' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/bam/SamRecord.cpp:3468:17: note: Technically the member function 'SamRecord::getTag' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamRecord.h:719:10: note: Technically the member function 'SamRecord::getTag' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamRecord.h:733:10: performance:inconclusive: Technically the member function 'SamRecord::appendIntArrayValue' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/bam/SamRecord.cpp:3507:17: note: Technically the member function 'SamRecord::appendIntArrayValue' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamRecord.h:733:10: note: Technically the member function 'SamRecord::appendIntArrayValue' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/bam/SamRecord.cpp:42:9: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamRecord.cpp:61:9: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamRecord.cpp:2405:13: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/bam/SamRecord.cpp:3389:26: portability: Casting between char * and float * which have an incompatible binary data representation. [invalidPointerCast]
libStatGen-1.0.14/bam/SamRecord.cpp:3611:18: portability: Casting between char * and float * which have an incompatible binary data representation. [invalidPointerCast]
libStatGen-1.0.14/bam/SamRecord.cpp:3671:41: portability: Casting between unsigned char * and float * which have an incompatible binary data representation. [invalidPointerCast]
libStatGen-1.0.14/bam/SamRecord.cpp:3249:25: style: Redundant initialization for 'tagInfo'. The initialized value is overwritten before it is read. [redundantInitialization]
libStatGen-1.0.14/bam/SamRecord.cpp:3246:40: note: tagInfo is initialized
libStatGen-1.0.14/bam/SamRecord.cpp:3249:25: note: tagInfo is overwritten
libStatGen-1.0.14/bam/SamRecord.cpp:1647:25: style: The scope of the variable 'asciiBases' can be reduced. [variableScope]
libStatGen-1.0.14/bam/SamRecord.cpp:2915:9: style: The scope of the variable 'opLen' can be reduced. [variableScope]
libStatGen-1.0.14/bam/SamRecord.cpp:779:65: style:inconclusive: Function 'addTag' argument 3 names different: declaration 'value' definition 'valuePtr'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamRecord.h:244:58: note: Function 'addTag' argument 3 names different: declaration 'value' definition 'valuePtr'.
libStatGen-1.0.14/bam/SamRecord.cpp:779:65: note: Function 'addTag' argument 3 names different: declaration 'value' definition 'valuePtr'.
libStatGen-1.0.14/bam/SamRecord.cpp:2438:35: style:inconclusive: Function 'getStringPtr' argument 1 names different: declaration 'offset' definition 'index'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamRecord.h:681:28: note: Function 'getStringPtr' argument 1 names different: declaration 'offset' definition 'index'.
libStatGen-1.0.14/bam/SamRecord.cpp:2438:35: note: Function 'getStringPtr' argument 1 names different: declaration 'offset' definition 'index'.
libStatGen-1.0.14/bam/SamRecord.cpp:2445:50: style:inconclusive: Function 'getIntegerPtr' argument 2 names different: declaration 'vtype' definition 'type'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamRecord.h:682:43: note: Function 'getIntegerPtr' argument 2 names different: declaration 'vtype' definition 'type'.
libStatGen-1.0.14/bam/SamRecord.cpp:2445:50: note: Function 'getIntegerPtr' argument 2 names different: declaration 'vtype' definition 'type'.
libStatGen-1.0.14/bam/SamRecord.cpp:3478:35: style:inconclusive: Function 'getString' argument 1 names different: declaration 'offset' definition 'index'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamRecord.h:721:28: note: Function 'getString' argument 1 names different: declaration 'offset' definition 'index'.
libStatGen-1.0.14/bam/SamRecord.cpp:3478:35: note: Function 'getString' argument 1 names different: declaration 'offset' definition 'index'.
libStatGen-1.0.14/bam/SamRecord.cpp:2915:15: style: Variable 'opLen' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/SamReferenceInfo.cpp:131:73: style:inconclusive: Function 'operator=' argument 1 names different: declaration 'rhs' definition 'newInfo'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamReferenceInfo.h:67:61: note: Function 'operator=' argument 1 names different: declaration 'rhs' definition 'newInfo'.
libStatGen-1.0.14/bam/SamReferenceInfo.cpp:131:73: note: Function 'operator=' argument 1 names different: declaration 'rhs' definition 'newInfo'.
libStatGen-1.0.14/bam/SamTags.cpp:43:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/bam/SamTags.cpp:45:24: style: Variable 'queryIndex' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/SamValidation.cpp:50:5: performance: Variable 'myMessage' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
libStatGen-1.0.14/bam/SamValidation.h:133:18: style:inconclusive: Technically the member function 'SamValidationErrors::numErrors' can be const. [functionConst]
libStatGen-1.0.14/bam/SamValidation.cpp:151:35: note: Technically the member function 'SamValidationErrors::numErrors' can be const.
libStatGen-1.0.14/bam/SamValidation.h:133:18: note: Technically the member function 'SamValidationErrors::numErrors' can be const.
libStatGen-1.0.14/bam/SamValidation.cpp:46:52: style:inconclusive: Function 'SamValidationError' argument 3 names different: declaration 'Message' definition 'message'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamValidation.h:65:66: note: Function 'SamValidationError' argument 3 names different: declaration 'Message' definition 'message'.
libStatGen-1.0.14/bam/SamValidation.cpp:46:52: note: Function 'SamValidationError' argument 3 names different: declaration 'Message' definition 'message'.
libStatGen-1.0.14/bam/SamValidation.cpp:238:60: style:inconclusive: Function 'isValidQname' argument 2 names different: declaration 'qnameLen' definition 'readNameLen'. [funcArgNamesDifferent]
libStatGen-1.0.14/bam/SamValidation.h:199:57: note: Function 'isValidQname' argument 2 names different: declaration 'qnameLen' definition 'readNameLen'.
libStatGen-1.0.14/bam/SamValidation.cpp:238:60: note: Function 'isValidQname' argument 2 names different: declaration 'qnameLen' definition 'readNameLen'.
libStatGen-1.0.14/bam/SamValidation.cpp:46:52: performance: Function parameter 'message' should be passed by const reference. [passedByValue]
libStatGen-1.0.14/bam/SamValidation.cpp:186:9: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/bam/examples/pileup/Main.cpp:105:9: style: The scope of the variable 'returnValue' can be reduced. [variableScope]
libStatGen-1.0.14/bam/examples/pileup/Main.cpp:105:21: style: Variable 'returnValue' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/examples/pileup/Main.cpp:110:21: style: Variable 'returnValue' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/test/ModifyVar.h:22:1: style: The class 'modifyVar' does not have a constructor although it has private member variables. [noConstructor]
libStatGen-1.0.14/bam/test/ModifyVar.cpp:410:5: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
libStatGen-1.0.14/bam/test/ModifyVar.cpp:430:5: note: Found duplicate branches for 'if' and 'else'.
libStatGen-1.0.14/bam/test/ModifyVar.cpp:410:5: note: Found duplicate branches for 'if' and 'else'.
libStatGen-1.0.14/bam/test/ReadFiles.cpp:638:11: style: Variable 'varPtr' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/test/ShiftIndels.cpp:47:21: style: Variable 'shiftResult' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/test/TestValidate.cpp:291:11: style: Variable 'varPtr' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/test/TestValidate.cpp:697:11: style: Variable 'varPtr' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/test/TestValidate.cpp:893:11: style: Variable 'varPtr' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/test/TestValidate.cpp:1142:11: style: Variable 'varPtr' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/bam/test/ValidationTest.cpp:144:1: error: Memory leak: bufferRecordPtr [memleak]
libStatGen-1.0.14/bam/test/ValidationTest.cpp:214:1: error: Memory leak: bufferRecordPtr [memleak]
libStatGen-1.0.14/bam/test/ValidationTest.cpp:183:36: style: Variable 'bufferRecordPtr->myReferenceID' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/bam/test/ValidationTest.cpp:166:36: note: bufferRecordPtr->myReferenceID is assigned
libStatGen-1.0.14/bam/test/ValidationTest.cpp:183:36: note: bufferRecordPtr->myReferenceID is overwritten
libStatGen-1.0.14/bam/test/WriteFiles.cpp:625:27: style: Variable 'tmpString' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/fastq/BaseCount.h:42:10: style:inconclusive: Technically the member function 'BaseCount::printPercent' can be const. [functionConst]
libStatGen-1.0.14/fastq/BaseCount.cpp:62:17: note: Technically the member function 'BaseCount::printPercent' can be const.
libStatGen-1.0.14/fastq/BaseCount.h:42:10: note: Technically the member function 'BaseCount::printPercent' can be const.
libStatGen-1.0.14/fastq/FastQFile.h:161:10: style:inconclusive: Technically the member function 'FastQFile::logMessage' can be const. [functionConst]
libStatGen-1.0.14/fastq/FastQFile.cpp:894:17: note: Technically the member function 'FastQFile::logMessage' can be const.
libStatGen-1.0.14/fastq/FastQFile.h:161:10: note: Technically the member function 'FastQFile::logMessage' can be const.
libStatGen-1.0.14/fastq/FastQFile.h:165:10: style:inconclusive: Technically the member function 'FastQFile::isTimeToQuit' can be const. [functionConst]
libStatGen-1.0.14/fastq/FastQFile.cpp:906:17: note: Technically the member function 'FastQFile::isTimeToQuit' can be const.
libStatGen-1.0.14/fastq/FastQFile.h:165:10: note: Technically the member function 'FastQFile::isTimeToQuit' can be const.
libStatGen-1.0.14/fastq/FastQFile.h:167:10: style:inconclusive: Technically the member function 'FastQFile::printAvgQual' can be const. [functionConst]
libStatGen-1.0.14/fastq/FastQFile.cpp:918:17: note: Technically the member function 'FastQFile::printAvgQual' can be const.
libStatGen-1.0.14/fastq/FastQFile.h:167:10: note: Technically the member function 'FastQFile::printAvgQual' can be const.
libStatGen-1.0.14/fastq/FastQFile.cpp:718:9: style: The scope of the variable 'validBase' can be reduced. [variableScope]
libStatGen-1.0.14/fastq/FastQFile.cpp:894:40: style:inconclusive: Function 'logMessage' argument 1 names different: declaration 'message' definition 'logMessage'. [funcArgNamesDifferent]
libStatGen-1.0.14/fastq/FastQFile.h:161:33: note: Function 'logMessage' argument 1 names different: declaration 'message' definition 'logMessage'.
libStatGen-1.0.14/fastq/FastQFile.cpp:894:40: note: Function 'logMessage' argument 1 names different: declaration 'message' definition 'logMessage'.
libStatGen-1.0.14/fastq/FastQFile.cpp:384:13: style: Variable 'valid' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/fastq/FastQFile.cpp:718:19: style: Variable 'validBase' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/BaseAsciiMap.cpp:137:15: warning: Member variable 'BaseAsciiMap::myPrimerCount' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/BaseAsciiMap.h:134:23: style:inconclusive: Technically the member function 'BaseAsciiMap::getSpaceType' can be const. [functionConst]
libStatGen-1.0.14/general/InputFile.h:60:9: warning: Class 'InputFile' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/InputFile.h:60:9: warning: Class 'InputFile' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/StringBasics.h:55:5: style: Class 'String' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/BaseQualityHelper.h:26:12: style:inconclusive: Technically the member function 'baseQualityConvertor::toDouble' can be const. [functionConst]
libStatGen-1.0.14/general/BaseQualityHelper.cpp:34:30: note: Technically the member function 'baseQualityConvertor::toDouble' can be const.
libStatGen-1.0.14/general/BaseQualityHelper.h:26:12: note: Technically the member function 'baseQualityConvertor::toDouble' can be const.
libStatGen-1.0.14/general/BaseQualityHelper.cpp:34:53: style:inconclusive: Function 'toDouble' argument 1 names different: declaration 'baseQuality' definition 'bq'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/BaseQualityHelper.h:26:35: note: Function 'toDouble' argument 1 names different: declaration 'baseQuality' definition 'bq'.
libStatGen-1.0.14/general/BaseQualityHelper.cpp:34:53: note: Function 'toDouble' argument 1 names different: declaration 'baseQuality' definition 'bq'.
libStatGen-1.0.14/general/BasicHash.h:68:9: style:inconclusive: Technically the member function 'BasicHash::Find' can be const. [functionConst]
libStatGen-1.0.14/general/BasicHash.cpp:118:16: note: Technically the member function 'BasicHash::Find' can be const.
libStatGen-1.0.14/general/BasicHash.h:68:9: note: Technically the member function 'BasicHash::Find' can be const.
libStatGen-1.0.14/general/BasicHash.h:69:9: style:inconclusive: Technically the member function 'BasicHash::Rehash' can be const. [functionConst]
libStatGen-1.0.14/general/BasicHash.cpp:125:16: note: Technically the member function 'BasicHash::Rehash' can be const.
libStatGen-1.0.14/general/BasicHash.h:69:9: note: Technically the member function 'BasicHash::Rehash' can be const.
libStatGen-1.0.14/general/BasicHash.h:80:10: style:inconclusive: Technically the member function 'BasicHash::SlotInUse' can be const. [functionConst]
libStatGen-1.0.14/general/BasicHash.cpp:33:5: warning: Class 'BasicHash' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/CharBuffer.h:28:5: style: Class 'CharBuffer' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/Chromosome.cpp:34:17: warning: Assert statement calls a function which may have desired side effects: 'open'. [assertWithSideEffect]
libStatGen-1.0.14/general/Chromosome.cpp:46:17: warning: Assert statement calls a function which may have desired side effects: 'open'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequenceHelpers.h:79:1: style: The class 'genomeSequenceMmapHeader' does not have a constructor although it has private member variables. [noConstructor]
libStatGen-1.0.14/general/MemoryMap.h:211:12: style:inconclusive: Technically the member function 'MemoryMap::length' can be const. [functionConst]
libStatGen-1.0.14/general/MemoryMapArray.h:125:12: style:inconclusive: Technically the member function 'MemoryMapGenericHeader::getHeaderSize' can be const. [functionConst]
libStatGen-1.0.14/general/MemoryMapArray.h:163:24: style:inconclusive: Technically the member function 'MemoryMapArray::getErrorString' can be const. [functionConst]
libStatGen-1.0.14/general/GenomeSequenceHelpers.h:153:9: style:inconclusive: Technically the member function 'PackedRead::size' can be const. [functionConst]
libStatGen-1.0.14/general/GenomeSequenceHelpers.h:163:13: style:inconclusive: Technically the member function 'PackedRead::operator[]' can be const. [functionConst]
libStatGen-1.0.14/general/GenomeSequence.h:319:10: performance:inconclusive: Technically the member function 'GenomeSequence::BasePair' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/Chromosome.cpp:43:5: warning: Class 'Chromosome' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/Chromosome.cpp:43:5: warning: Class 'Chromosome' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/MemoryMapArray.h:145:26: warning: The class 'MemoryMapArray' defines member variable with name 'data' also defined in its parent class 'MemoryMap'. [duplInheritedMember]
libStatGen-1.0.14/general/MemoryMap.h:171:11: note: Parent variable 'MemoryMap::data'
libStatGen-1.0.14/general/MemoryMapArray.h:145:26: note: Derived variable 'MemoryMapArray::data'
libStatGen-1.0.14/general/GenomeSequence.h:128:5: style: Class 'GenomeSequence' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/GenomeSequence.h:138:5: style: Class 'GenomeSequence' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/MemoryMapArray.h:269:10: style: The function 'open' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/MemoryMap.h:190:18: note: Virtual function in base class
libStatGen-1.0.14/general/MemoryMapArray.h:269:10: note: Function in derived class
libStatGen-1.0.14/general/GenomeSequence.h:159:10: style: The function 'open' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/MemoryMap.h:190:18: note: Virtual function in base class
libStatGen-1.0.14/general/GenomeSequence.h:159:10: note: Function in derived class
libStatGen-1.0.14/general/Chromosome.cpp:4:57: style:inconclusive: Function 'Chromosome' argument 2 names different: declaration 'chrosomeIndex' definition 'chromosomeIndex'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Chromosome.h:8:58: note: Function 'Chromosome' argument 2 names different: declaration 'chrosomeIndex' definition 'chromosomeIndex'.
libStatGen-1.0.14/general/Chromosome.cpp:4:57: note: Function 'Chromosome' argument 2 names different: declaration 'chrosomeIndex' definition 'chromosomeIndex'.
libStatGen-1.0.14/general/GenomeSequence.h:194:37: performance: Function parameter 'application' should be passed by const reference. [passedByValue]
libStatGen-1.0.14/general/GenomeSequence.h:488:39: style: Parameter 'read' can be declared with const [constParameter]
libStatGen-1.0.14/general/GenomeSequence.h:501:30: style: Parameter 'read' can be declared with const [constParameter]
libStatGen-1.0.14/general/GenomeSequence.h:501:49: style: Parameter 'qualities' can be declared with const [constParameter]
libStatGen-1.0.14/general/Generic.h:84:39: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/Generic.h:100:39: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/Cigar.h:487:10: style:inconclusive: Technically the member function 'Cigar::hasIndel' can be const. [functionConst]
libStatGen-1.0.14/general/Cigar.cpp:398:13: note: Technically the member function 'Cigar::hasIndel' can be const.
libStatGen-1.0.14/general/Cigar.h:487:10: note: Technically the member function 'Cigar::hasIndel' can be const.
libStatGen-1.0.14/general/Cigar.cpp:374:13: style: The scope of the variable 'refOffset' can be reduced. [variableScope]
libStatGen-1.0.14/general/STLUtilities.h:113:88: performance: Function parameter 'separator' should be passed by const reference. [passedByValue]
libStatGen-1.0.14/general/STLUtilities.h:103:57: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/Cigar.cpp:80:33: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/Cigar.cpp:374:23: style: Variable 'refOffset' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/STLUtilities.h:115:56: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/STLUtilities.h:186:70: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/STLUtilities.h:199:69: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/Cigar.cpp:46:67: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/Cigar.cpp:72:67: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/Cigar.cpp:99:67: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/Cigar.cpp:124:67: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/CigarRoller.h:85:5: style: Class 'CigarRoller' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/CigarRoller.h:109:27: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/CigarRoller.cpp:66:53: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/CigarRoller.cpp:32:75: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/CigarRoller.cpp:249:67: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/CigarRoller.cpp:312:67: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/FileType.cpp:20:11: warning: Member variable 'FileType::myUsingBuffer' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/FortranFormat.cpp:21:16: warning: Member variable 'FortranFormat::formatPos' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/FortranFormat.cpp:21:16: warning: Member variable 'FortranFormat::repeatCount' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/FortranFormat.cpp:21:16: warning: Member variable 'FortranFormat::input' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/FortranFormat.cpp:21:16: warning: Member variable 'FortranFormat::lastBracket' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/FortranFormat.cpp:21:16: warning: Member variable 'FortranFormat::lastCount' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/FortranFormat.h:70:10: style:inconclusive: Technically the member function 'FortranFormat::DigitFollows' can be const. [functionConst]
libStatGen-1.0.14/general/FortranFormat.cpp:274:21: note: Technically the member function 'FortranFormat::DigitFollows' can be const.
libStatGen-1.0.14/general/FortranFormat.h:70:10: note: Technically the member function 'FortranFormat::DigitFollows' can be const.
libStatGen-1.0.14/general/FortranFormat.h:71:10: style:inconclusive: Technically the member function 'FortranFormat::CharacterFollows' can be const. [functionConst]
libStatGen-1.0.14/general/FortranFormat.cpp:279:21: note: Technically the member function 'FortranFormat::CharacterFollows' can be const.
libStatGen-1.0.14/general/FortranFormat.h:71:10: note: Technically the member function 'FortranFormat::CharacterFollows' can be const.
libStatGen-1.0.14/general/FortranFormat.cpp:284:38: style:inconclusive: Function 'RejectWidth' argument 1 names different: declaration 'type' definition 'ch'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/FortranFormat.h:77:27: note: Function 'RejectWidth' argument 1 names different: declaration 'type' definition 'ch'.
libStatGen-1.0.14/general/FortranFormat.cpp:284:38: note: Function 'RejectWidth' argument 1 names different: declaration 'type' definition 'ch'.
libStatGen-1.0.14/general/FortranFormat.cpp:171:62: warning: Conversion of char literal ')' to bool always evaluates to true. [incorrectCharBooleanError]
libStatGen-1.0.14/general/FortranFormat.cpp:197:62: warning: Conversion of char literal ')' to bool always evaluates to true. [incorrectCharBooleanError]
libStatGen-1.0.14/general/GenomeSequence.cpp:1490:15: warning: Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequence.cpp:1496:15: warning: Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequence.cpp:1498:15: warning: Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequence.cpp:1500:15: warning: Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequence.cpp:1502:15: warning: Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequence.cpp:1504:15: warning: Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequence.cpp:1509:15: warning: Assert statement calls a function which may have desired side effects: 'size'. [assertWithSideEffect]
libStatGen-1.0.14/general/GenomeSequence.cpp:139:17: warning: Member variable 'GenomeSequence::_searchCommonFileSuffix' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/GenomeSequence.cpp:381:1: style: The class 'PackedSequenceData' does not have a constructor although it has private member variables. [noConstructor]
libStatGen-1.0.14/general/GenomeSequenceHelpers.h:143:10: style: Unused private function: 'PackedRead::set' [unusedPrivateFunction]
libStatGen-1.0.14/general/GenomeSequence.h:313:17: performance:inconclusive: Technically the member function 'GenomeSequence::IntegerToSeq' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/GenomeSequence.cpp:118:29: note: Technically the member function 'GenomeSequence::IntegerToSeq' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/GenomeSequence.h:313:17: note: Technically the member function 'GenomeSequence::IntegerToSeq' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/GenomeSequence.h:438:10: style:inconclusive: Technically the member function 'GenomeSequence::getReverseRead' can be const. [functionConst]
libStatGen-1.0.14/general/GenomeSequence.cpp:831:22: note: Technically the member function 'GenomeSequence::getReverseRead' can be const.
libStatGen-1.0.14/general/GenomeSequence.h:438:10: note: Technically the member function 'GenomeSequence::getReverseRead' can be const.
libStatGen-1.0.14/general/GenomeSequence.h:441:10: performance:inconclusive: Technically the member function 'GenomeSequence::getReverseRead' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/GenomeSequence.cpp:841:22: note: Technically the member function 'GenomeSequence::getReverseRead' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/GenomeSequence.h:441:10: note: Technically the member function 'GenomeSequence::getReverseRead' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/GenomeSequence.cpp:845:10: style: The scope of the variable 'temp' can be reduced. [variableScope]
libStatGen-1.0.14/general/GenomeSequence.cpp:941:72: style:inconclusive: Function 'printNearbyWords' argument 2 names different: declaration 'variance' definition 'deviation'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenomeSequence.h:316:60: note: Function 'printNearbyWords' argument 2 names different: declaration 'variance' definition 'deviation'.
libStatGen-1.0.14/general/GenomeSequence.cpp:941:72: note: Function 'printNearbyWords' argument 2 names different: declaration 'variance' definition 'deviation'.
libStatGen-1.0.14/general/GenomeSequence.cpp:932:65: style: Parameter 'word' can be declared with const [constParameter]
libStatGen-1.0.14/general/CSG_MD5.h:381:9: style: Parameter 'input' can be declared with const [constParameter]
libStatGen-1.0.14/general/CSG_MD5.h:348:11: style: Parameter 'input' can be declared with const [constParameter]
libStatGen-1.0.14/general/GenotypeLists.cpp:24:15: warning: Member variable 'GenotypeList::checked' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/GenotypeLists.h:55:17: style: Unused private function: 'GenotypeList::Print' [unusedPrivateFunction]
libStatGen-1.0.14/general/PedigreeGlobals.h:48:9: performance: Variable 'name' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
libStatGen-1.0.14/general/PedigreeAlleles.h:40:10: style:inconclusive: Technically the member function 'Alleles::isKnown' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeAlleles.h:52:10: style:inconclusive: Technically the member function 'Alleles::hasAllele' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeAlleles.h:68:9: style:inconclusive: Technically the member function 'Alleles::countAlleles' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeAlleles.h:74:9: style:inconclusive: Technically the member function 'Alleles::otherAllele' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeAlleles.h:80:9: style:inconclusive: Technically the member function 'Alleles::identicalTo' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeAlleles.h:87:9: style:inconclusive: Technically the member function 'Alleles::countIBS' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeAlleles.h:105:10: style:inconclusive: Technically the member function 'Alleles::Hi' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeAlleles.h:109:10: style:inconclusive: Technically the member function 'Alleles::Lo' can be const. [functionConst]
libStatGen-1.0.14/general/MathVector.h:122:12: style:inconclusive: Technically the member function 'Vector::operator[]' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeGlobals.h:89:9: style:inconclusive: Technically the member function 'MarkerInfo::CountAlleles' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:61:10: style:inconclusive: Technically the member function 'Person::isHalfSib' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:67:10: style:inconclusive: Technically the member function 'Person::isSib' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:91:10: style:inconclusive: Technically the member function 'Person::isFounder' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:95:10: style:inconclusive: Technically the member function 'Person::isSexed' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:103:10: style:inconclusive: Technically the member function 'Person::isFullyGenotyped' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:107:10: style:inconclusive: Technically the member function 'Person::isControlled' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:111:10: style:inconclusive: Technically the member function 'Person::isFullyControlled' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:115:10: style:inconclusive: Technically the member function 'Person::isPhenotyped' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:119:10: style:inconclusive: Technically the member function 'Person::isFullyPhenotyped' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:123:10: style:inconclusive: Technically the member function 'Person::isDiagnosed' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.h:127:10: style:inconclusive: Technically the member function 'Person::isFullyDiagnosed' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeFamily.h:46:12: style:inconclusive: Technically the member function 'Family::isNuclear' can be const. [functionConst]
libStatGen-1.0.14/general/GenotypeLists.h:40:12: style:inconclusive: Technically the member function 'GenotypeList::Matches' can be const. [functionConst]
libStatGen-1.0.14/general/GenotypeLists.cpp:285:20: note: Technically the member function 'GenotypeList::Matches' can be const.
libStatGen-1.0.14/general/GenotypeLists.h:40:12: note: Technically the member function 'GenotypeList::Matches' can be const.
libStatGen-1.0.14/general/GenotypeLists.h:41:12: style:inconclusive: Technically the member function 'GenotypeList::Matches' can be const. [functionConst]
libStatGen-1.0.14/general/GenotypeLists.cpp:290:20: note: Technically the member function 'GenotypeList::Matches' can be const.
libStatGen-1.0.14/general/GenotypeLists.h:41:12: note: Technically the member function 'GenotypeList::Matches' can be const.
libStatGen-1.0.14/general/MathVector.h:44:5: style: Class 'Vector' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/MathVector.h:49:5: style: Class 'Vector' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/MathVector.h:292:5: style: Class 'VectorFunc' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/PedigreeGlobals.h:45:5: style: Class 'MarkerInfo' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/StringHash.h:87:10: style: The function 'SetSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/StringHash.h:37:18: note: Virtual function in base class
libStatGen-1.0.14/general/StringHash.h:87:10: note: Function in derived class
libStatGen-1.0.14/general/StringHash.h:215:10: style: The function 'SetSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/StringHash.h:37:18: note: Virtual function in base class
libStatGen-1.0.14/general/StringHash.h:215:10: note: Function in derived class
libStatGen-1.0.14/general/StringHash.h:331:10: style: The function 'SetSize' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/StringHash.h:37:18: note: Virtual function in base class
libStatGen-1.0.14/general/StringHash.h:331:10: note: Function in derived class
libStatGen-1.0.14/general/GenotypeLists.cpp:64:67: style:inconclusive: Function 'InitializeList' argument 2 names different: declaration 'p' definition 'ped'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:47:64: note: Function 'InitializeList' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:64:67: note: Function 'InitializeList' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:64:81: style:inconclusive: Function 'InitializeList' argument 3 names different: declaration 'f' definition 'family'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:47:76: note: Function 'InitializeList' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:64:81: note: Function 'InitializeList' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:143:66: style:inconclusive: Function 'PairwiseCheck' argument 2 names different: declaration 'p' definition 'ped'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:48:63: note: Function 'PairwiseCheck' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:143:66: note: Function 'PairwiseCheck' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:143:80: style:inconclusive: Function 'PairwiseCheck' argument 3 names different: declaration 'f' definition 'family'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:48:75: note: Function 'PairwiseCheck' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:143:80: note: Function 'PairwiseCheck' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:228:64: style:inconclusive: Function 'FamilyCheck' argument 2 names different: declaration 'p' definition 'ped'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:49:61: note: Function 'FamilyCheck' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:228:64: note: Function 'FamilyCheck' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:228:78: style:inconclusive: Function 'FamilyCheck' argument 3 names different: declaration 'f' definition 'family'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:49:73: note: Function 'FamilyCheck' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:228:78: note: Function 'FamilyCheck' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:338:46: warning: Function 'TrimParent' argument order different: declaration 'list, person, fatid, motid' definition 'list, person, motid, fatid' [funcArgOrderDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:52:43: note: Function 'TrimParent' argument order different: declaration 'list, person, fatid, motid' definition 'list, person, motid, fatid'
libStatGen-1.0.14/general/GenotypeLists.cpp:338:46: note: Function 'TrimParent' argument order different: declaration 'list, person, fatid, motid' definition 'list, person, motid, fatid'
libStatGen-1.0.14/general/GenotypeLists.cpp:408:43: warning: Function 'Cleanup' argument order different: declaration 'list, person, fatid, motid, child, geno' definition 'list, person, motid, fatid, child, geno' [funcArgOrderDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:53:40: note: Function 'Cleanup' argument order different: declaration 'list, person, fatid, motid, child, geno' definition 'list, person, motid, fatid, child, geno'
libStatGen-1.0.14/general/GenotypeLists.cpp:408:43: note: Function 'Cleanup' argument order different: declaration 'list, person, fatid, motid, child, geno' definition 'list, person, motid, fatid, child, geno'
libStatGen-1.0.14/general/GenotypeLists.cpp:460:41: style:inconclusive: Function 'Print' argument 1 names different: declaration 'List' definition 'list'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:55:38: note: Function 'Print' argument 1 names different: declaration 'List' definition 'list'.
libStatGen-1.0.14/general/GenotypeLists.cpp:460:41: note: Function 'Print' argument 1 names different: declaration 'List' definition 'list'.
libStatGen-1.0.14/general/GenotypeLists.cpp:460:58: style:inconclusive: Function 'Print' argument 2 names different: declaration 'p' definition 'ped'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:55:55: note: Function 'Print' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:460:58: note: Function 'Print' argument 2 names different: declaration 'p' definition 'ped'.
libStatGen-1.0.14/general/GenotypeLists.cpp:460:72: style:inconclusive: Function 'Print' argument 3 names different: declaration 'f' definition 'family'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/GenotypeLists.h:55:67: note: Function 'Print' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:460:72: note: Function 'Print' argument 3 names different: declaration 'f' definition 'family'.
libStatGen-1.0.14/general/GenotypeLists.cpp:97:26: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:66:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:97:26: note: Shadow variable
libStatGen-1.0.14/general/GenotypeLists.cpp:110:26: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:66:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:110:26: note: Shadow variable
libStatGen-1.0.14/general/GenotypeLists.cpp:135:18: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:66:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:135:18: note: Shadow variable
libStatGen-1.0.14/general/GenotypeLists.cpp:164:18: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:151:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:164:18: note: Shadow variable
libStatGen-1.0.14/general/GenotypeLists.cpp:186:18: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:151:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:186:18: note: Shadow variable
libStatGen-1.0.14/general/GenotypeLists.cpp:204:18: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:151:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:204:18: note: Shadow variable
libStatGen-1.0.14/general/GenotypeLists.cpp:255:18: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:236:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:255:18: note: Shadow variable
libStatGen-1.0.14/general/GenotypeLists.cpp:265:18: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/GenotypeLists.cpp:236:14: note: Shadowed declaration
libStatGen-1.0.14/general/GenotypeLists.cpp:265:18: note: Shadow variable
libStatGen-1.0.14/general/PedigreeAlleles.h:80:31: style: Parameter 'al' can be declared with const [constParameter]
libStatGen-1.0.14/general/PedigreeAlleles.h:87:28: style: Parameter 'al' can be declared with const [constParameter]
libStatGen-1.0.14/general/MathVector.h:39:21: style: Parameter 'v' can be declared with const [constParameter]
libStatGen-1.0.14/general/MathVector.h:60:40: style: Parameter 'v' can be declared with const [constParameter]
libStatGen-1.0.14/general/MathVector.h:93:25: style: Parameter 'v' can be declared with const [constParameter]
libStatGen-1.0.14/general/PedigreeGlobals.h:45:25: style: Parameter 'string' can be declared with const [constParameter]
libStatGen-1.0.14/general/PedigreePerson.h:61:29: style: Parameter 'sib' can be declared with const [constParameter]
libStatGen-1.0.14/general/PedigreePerson.h:67:25: style: Parameter 'sib' can be declared with const [constParameter]
libStatGen-1.0.14/general/GenotypeLists.cpp:338:61: style: Parameter 'person' can be declared with const [constParameter]
libStatGen-1.0.14/general/GenotypeLists.cpp:408:58: style: Parameter 'person' can be declared with const [constParameter]
libStatGen-1.0.14/general/GzipHeader.h:40:10: style:inconclusive: Technically the member function 'GzipHeader::isGzipFile' can be const. [functionConst]
libStatGen-1.0.14/general/GzipHeader.cpp:100:18: note: Technically the member function 'GzipHeader::isGzipFile' can be const.
libStatGen-1.0.14/general/GzipHeader.h:40:10: note: Technically the member function 'GzipHeader::isGzipFile' can be const.
libStatGen-1.0.14/general/UncompressedFileType.h:46:10: style: The function 'operator==' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:29:18: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:46:10: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:56:10: style: The function 'operator!=' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:31:18: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:56:10: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:68:16: style: The function 'close' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:34:17: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:68:16: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:91:17: style: The function 'rewind' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:37:18: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:91:17: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:105:16: style: The function 'eof' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:40:17: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:105:16: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:119:25: style: The function 'isOpen' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:43:18: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:119:25: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:130:25: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:46:26: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:130:25: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:139:16: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:49:17: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:139:16: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:166:28: style: The function 'tell' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:53:21: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:166:28: note: Function in derived class
libStatGen-1.0.14/general/UncompressedFileType.h:183:25: style: The function 'seek' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/FileType.h:62:18: note: Virtual function in base class
libStatGen-1.0.14/general/UncompressedFileType.h:183:25: note: Function in derived class
libStatGen-1.0.14/general/IndexBase.h:55:10: style:inconclusive: Technically the member function 'SortedChunkList::empty' can be const. [functionConst]
libStatGen-1.0.14/general/IndexBase.cpp:60:23: note: Technically the member function 'SortedChunkList::empty' can be const.
libStatGen-1.0.14/general/IndexBase.h:55:10: note: Technically the member function 'SortedChunkList::empty' can be const.
libStatGen-1.0.14/general/Input.cpp:129:19: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
libStatGen-1.0.14/general/Input.cpp:56:40: style:inconclusive: Function 'Input' argument 2 names different: declaration 'c' definition 'ch'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Input.h:23:40: note: Function 'Input' argument 2 names different: declaration 'c' definition 'ch'.
libStatGen-1.0.14/general/Input.cpp:56:40: note: Function 'Input' argument 2 names different: declaration 'c' definition 'ch'.
libStatGen-1.0.14/general/InputFile.cpp:37:5: warning: Class 'InputFile' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/InputFile.cpp:37:5: warning: Class 'InputFile' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/InputFile.cpp:46:9: style: The scope of the variable 'charRead' can be reduced. [variableScope]
libStatGen-1.0.14/general/InputFile.cpp:75:9: style: The scope of the variable 'charRead' can be reduced. [variableScope]
libStatGen-1.0.14/general/InputFile.cpp:114:9: style: The scope of the variable 'charRead' can be reduced. [variableScope]
libStatGen-1.0.14/general/InputFile.cpp:135:9: style: The scope of the variable 'charRead' can be reduced. [variableScope]
libStatGen-1.0.14/general/InputFile.cpp:46:18: style: Variable 'charRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/InputFile.cpp:75:18: style: Variable 'charRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/InputFile.cpp:114:18: style: Variable 'charRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/InputFile.cpp:135:18: style: Variable 'charRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/IntArray.h:227:10: style:inconclusive: Technically the member function 'IntArray::InnerProduct' can be const. [functionConst]
libStatGen-1.0.14/general/IntArray.cpp:324:15: note: Technically the member function 'IntArray::InnerProduct' can be const.
libStatGen-1.0.14/general/IntArray.h:227:10: note: Technically the member function 'IntArray::InnerProduct' can be const.
libStatGen-1.0.14/general/IntArray.h:232:10: style:inconclusive: Technically the member function 'IntArray::isAscending' can be const. [functionConst]
libStatGen-1.0.14/general/IntArray.cpp:297:16: note: Technically the member function 'IntArray::isAscending' can be const.
libStatGen-1.0.14/general/IntArray.h:232:10: note: Technically the member function 'IntArray::isAscending' can be const.
libStatGen-1.0.14/general/IntArray.h:233:10: style:inconclusive: Technically the member function 'IntArray::isDescending' can be const. [functionConst]
libStatGen-1.0.14/general/IntArray.cpp:305:16: note: Technically the member function 'IntArray::isDescending' can be const.
libStatGen-1.0.14/general/IntArray.h:233:10: note: Technically the member function 'IntArray::isDescending' can be const.
libStatGen-1.0.14/general/IntArray.h:250:12: style:inconclusive: Technically the member function 'IntArray::Product' can be const. [functionConst]
libStatGen-1.0.14/general/IntArray.cpp:377:15: note: Technically the member function 'IntArray::Product' can be const.
libStatGen-1.0.14/general/IntArray.h:250:12: note: Technically the member function 'IntArray::Product' can be const.
libStatGen-1.0.14/general/IntArray.h:251:12: style:inconclusive: Technically the member function 'IntArray::DoubleProduct' can be const. [functionConst]
libStatGen-1.0.14/general/IntArray.cpp:387:18: note: Technically the member function 'IntArray::DoubleProduct' can be const.
libStatGen-1.0.14/general/IntArray.h:251:12: note: Technically the member function 'IntArray::DoubleProduct' can be const.
libStatGen-1.0.14/general/IntArray.cpp:227:34: style:inconclusive: Function 'CountIfGreater' argument 1 names different: declaration 'treshold' definition 'threshold'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/IntArray.h:170:29: note: Function 'CountIfGreater' argument 1 names different: declaration 'treshold' definition 'threshold'.
libStatGen-1.0.14/general/IntArray.cpp:227:34: note: Function 'CountIfGreater' argument 1 names different: declaration 'treshold' definition 'threshold'.
libStatGen-1.0.14/general/IntArray.cpp:267:39: style:inconclusive: Function 'Stack' argument 1 names different: declaration 'rhs' definition 'a'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/IntArray.h:235:33: note: Function 'Stack' argument 1 names different: declaration 'rhs' definition 'a'.
libStatGen-1.0.14/general/IntArray.cpp:267:39: note: Function 'Stack' argument 1 names different: declaration 'rhs' definition 'a'.
libStatGen-1.0.14/general/IntArray.cpp:313:37: style:inconclusive: Function 'Add' argument 1 names different: declaration 'rhs' definition 'v'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/IntArray.h:195:31: note: Function 'Add' argument 1 names different: declaration 'rhs' definition 'v'.
libStatGen-1.0.14/general/IntArray.cpp:313:37: note: Function 'Add' argument 1 names different: declaration 'rhs' definition 'v'.
libStatGen-1.0.14/general/IntArray.cpp:324:39: style: Parameter 'v' can be declared with const [constParameter]
libStatGen-1.0.14/general/IntArray.cpp:205:29: style: Parameter 'a' can be declared with const [constParameter]
libStatGen-1.0.14/general/IntArray.cpp:205:38: style: Parameter 'b' can be declared with const [constParameter]
libStatGen-1.0.14/general/IntHash.h:85:9: style:inconclusive: Technically the member function 'IntHash::Find' can be const. [functionConst]
libStatGen-1.0.14/general/IntHash.cpp:118:14: note: Technically the member function 'IntHash::Find' can be const.
libStatGen-1.0.14/general/IntHash.h:85:9: note: Technically the member function 'IntHash::Find' can be const.
libStatGen-1.0.14/general/IntHash.h:86:9: style:inconclusive: Technically the member function 'IntHash::Rehash' can be const. [functionConst]
libStatGen-1.0.14/general/IntHash.cpp:125:14: note: Technically the member function 'IntHash::Rehash' can be const.
libStatGen-1.0.14/general/IntHash.h:86:9: note: Technically the member function 'IntHash::Rehash' can be const.
libStatGen-1.0.14/general/IntHash.h:97:10: style:inconclusive: Technically the member function 'IntHash::SlotInUse' can be const. [functionConst]
libStatGen-1.0.14/general/IntHash.cpp:33:5: warning: Class 'IntHash' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/LongHash.h:176:18: style:inconclusive: Technically the member function 'LongHash < int >::Find' can be const. [functionConst]
libStatGen-1.0.14/general/LongHash.h:183:18: style:inconclusive: Technically the member function 'LongHash < int >::Rehash' can be const. [functionConst]
libStatGen-1.0.14/general/LongHash.h:53:9: warning: Class 'LongHash < int >' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/MathMatrix.h:62:12: style:inconclusive: Technically the member function 'ColumnExtras::GetPrecision' can be const. [functionConst]
libStatGen-1.0.14/general/MathMatrix.h:133:18: style:inconclusive: Technically the member function 'Matrix::GetColumnLabel' can be const. [functionConst]
libStatGen-1.0.14/general/MathMatrix.h:104:5: style: Class 'Matrix' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/MathMatrix.cpp:345:16: warning: fscanf() without field width limits can crash with huge input data. [invalidscanf]
libStatGen-1.0.14/general/MathMatrix.cpp:356:20: warning: fscanf() without field width limits can crash with huge input data. [invalidscanf]
libStatGen-1.0.14/general/MathMatrix.cpp:670:34: error: Null pointer dereference: width [nullPointer]
libStatGen-1.0.14/general/MathMatrix.cpp:660:39: note: Assignment 'width=NULL', assigned value is 0
libStatGen-1.0.14/general/MathMatrix.cpp:670:34: note: Null pointer dereference
libStatGen-1.0.14/general/MathMatrix.cpp:670:44: error: Null pointer dereference: precision [nullPointer]
libStatGen-1.0.14/general/MathMatrix.cpp:660:23: note: Assignment 'precision=NULL', assigned value is 0
libStatGen-1.0.14/general/MathMatrix.cpp:670:44: note: Null pointer dereference
libStatGen-1.0.14/general/MathMatrix.cpp:672:34: error: Null pointer dereference: width [nullPointer]
libStatGen-1.0.14/general/MathMatrix.cpp:660:39: note: Assignment 'width=NULL', assigned value is 0
libStatGen-1.0.14/general/MathMatrix.cpp:672:34: note: Null pointer dereference
libStatGen-1.0.14/general/MathMatrix.cpp:672:44: error: Null pointer dereference: precision [nullPointer]
libStatGen-1.0.14/general/MathMatrix.cpp:660:23: note: Assignment 'precision=NULL', assigned value is 0
libStatGen-1.0.14/general/MathMatrix.cpp:672:44: note: Null pointer dereference
libStatGen-1.0.14/general/MathMatrix.cpp:259:12: style: The scope of the variable 'pivot' can be reduced. [variableScope]
libStatGen-1.0.14/general/MathMatrix.cpp:327:12: style: The scope of the variable 'temp' can be reduced. [variableScope]
libStatGen-1.0.14/general/MathMatrix.cpp:222:37: style:inconclusive: Function 'Product' argument 1 names different: declaration 'left' definition 'l'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:156:33: note: Function 'Product' argument 1 names different: declaration 'left' definition 'l'.
libStatGen-1.0.14/general/MathMatrix.cpp:222:37: note: Function 'Product' argument 1 names different: declaration 'left' definition 'l'.
libStatGen-1.0.14/general/MathMatrix.cpp:222:55: style:inconclusive: Function 'Product' argument 2 names different: declaration 'right' definition 'r'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:156:54: note: Function 'Product' argument 2 names different: declaration 'right' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:222:55: note: Function 'Product' argument 2 names different: declaration 'right' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:370:34: style:inconclusive: Function 'Print' argument 2 names different: declaration 'maxRows' definition 'r'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:196:30: note: Function 'Print' argument 2 names different: declaration 'maxRows' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:370:34: note: Function 'Print' argument 2 names different: declaration 'maxRows' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:370:41: style:inconclusive: Function 'Print' argument 3 names different: declaration 'maxCols' definition 'c'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:196:48: note: Function 'Print' argument 3 names different: declaration 'maxCols' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:370:41: note: Function 'Print' argument 3 names different: declaration 'maxCols' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:407:34: style:inconclusive: Function 'CopyLabels' argument 1 names different: declaration 'm' definition 'M'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:145:30: note: Function 'CopyLabels' argument 1 names different: declaration 'm' definition 'M'.
libStatGen-1.0.14/general/MathMatrix.cpp:407:34: note: Function 'CopyLabels' argument 1 names different: declaration 'm' definition 'M'.
libStatGen-1.0.14/general/MathMatrix.cpp:461:40: style:inconclusive: Function 'Swap' argument 1 names different: declaration 'rhs' definition 'c'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:73:30: note: Function 'Swap' argument 1 names different: declaration 'rhs' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:461:40: note: Function 'Swap' argument 1 names different: declaration 'rhs' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:657:39: style:inconclusive: Function 'PrintUpper' argument 2 names different: declaration 'maxRows' definition 'r'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:197:35: note: Function 'PrintUpper' argument 2 names different: declaration 'maxRows' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:657:39: note: Function 'PrintUpper' argument 2 names different: declaration 'maxRows' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:657:46: style:inconclusive: Function 'PrintUpper' argument 3 names different: declaration 'maxCols' definition 'c'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:197:53: note: Function 'PrintUpper' argument 3 names different: declaration 'maxCols' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:657:46: note: Function 'PrintUpper' argument 3 names different: declaration 'maxCols' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:683:39: style:inconclusive: Function 'PrintLower' argument 2 names different: declaration 'maxRows' definition 'r'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:198:35: note: Function 'PrintLower' argument 2 names different: declaration 'maxRows' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:683:39: note: Function 'PrintLower' argument 2 names different: declaration 'maxRows' definition 'r'.
libStatGen-1.0.14/general/MathMatrix.cpp:683:46: style:inconclusive: Function 'PrintLower' argument 3 names different: declaration 'maxCols' definition 'c'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathMatrix.h:198:53: note: Function 'PrintLower' argument 3 names different: declaration 'maxCols' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:683:46: note: Function 'PrintLower' argument 3 names different: declaration 'maxCols' definition 'c'.
libStatGen-1.0.14/general/MathMatrix.cpp:354:14: style: Local variable 'c' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/MathMatrix.cpp:341:13: note: Shadowed declaration
libStatGen-1.0.14/general/MathMatrix.cpp:354:14: note: Shadow variable
libStatGen-1.0.14/general/MathMatrix.cpp:361:14: style: Local variable 'r' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/MathMatrix.cpp:341:10: note: Shadowed declaration
libStatGen-1.0.14/general/MathMatrix.cpp:361:14: note: Shadow variable
libStatGen-1.0.14/general/MathMatrix.cpp:362:18: style: Local variable 'c' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/MathMatrix.cpp:341:13: note: Shadowed declaration
libStatGen-1.0.14/general/MathMatrix.cpp:362:18: note: Shadow variable
libStatGen-1.0.14/general/MathMatrix.h:88:21: style: Parameter 'm' can be declared with const [constParameter]
libStatGen-1.0.14/general/MathMatrix.h:93:21: style: Parameter 'm' can be declared with const [constParameter]
libStatGen-1.0.14/general/MathMatrix.cpp:450:40: style: Parameter 'c' can be declared with const [constParameter]
libStatGen-1.0.14/general/MathVector.cpp:465:13: warning: Member variable 'VectorFunc::dfmin' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/MathVector.cpp:470:13: warning: Member variable 'VectorFunc::dfmin' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/MathVector.h:189:12: style:inconclusive: Technically the member function 'Vector::Average' can be const. [functionConst]
libStatGen-1.0.14/general/MathVector.cpp:663:16: note: Technically the member function 'Vector::Average' can be const.
libStatGen-1.0.14/general/MathVector.h:189:12: note: Technically the member function 'Vector::Average' can be const.
libStatGen-1.0.14/general/MathVector.h:190:12: style:inconclusive: Technically the member function 'Vector::Var' can be const. [functionConst]
libStatGen-1.0.14/general/MathVector.cpp:671:16: note: Technically the member function 'Vector::Var' can be const.
libStatGen-1.0.14/general/MathVector.h:190:12: note: Technically the member function 'Vector::Var' can be const.
libStatGen-1.0.14/general/MathVector.h:191:12: style:inconclusive: Technically the member function 'Vector::StandardDeviation' can be const. [functionConst]
libStatGen-1.0.14/general/MathVector.cpp:679:16: note: Technically the member function 'Vector::StandardDeviation' can be const.
libStatGen-1.0.14/general/MathVector.h:191:12: note: Technically the member function 'Vector::StandardDeviation' can be const.
libStatGen-1.0.14/general/MathVector.h:264:12: style:inconclusive: Technically the member function 'Vector::isAscending' can be const. [functionConst]
libStatGen-1.0.14/general/MathVector.cpp:446:14: note: Technically the member function 'Vector::isAscending' can be const.
libStatGen-1.0.14/general/MathVector.h:264:12: note: Technically the member function 'Vector::isAscending' can be const.
libStatGen-1.0.14/general/MathVector.h:265:12: style:inconclusive: Technically the member function 'Vector::isDescending' can be const. [functionConst]
libStatGen-1.0.14/general/MathVector.cpp:454:14: note: Technically the member function 'Vector::isDescending' can be const.
libStatGen-1.0.14/general/MathVector.h:265:12: note: Technically the member function 'Vector::isDescending' can be const.
libStatGen-1.0.14/general/MathVector.cpp:566:14: style: Variable 'x[k]' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/MathVector.cpp:561:22: note: x[k] is assigned
libStatGen-1.0.14/general/MathVector.cpp:566:14: note: x[k] is overwritten
libStatGen-1.0.14/general/MathVector.cpp:272:12: style: The scope of the variable 's' can be reduced. [variableScope]
libStatGen-1.0.14/general/MathVector.cpp:117:45: style:inconclusive: Function 'operator=' argument 1 names different: declaration 'v' definition 'rhs'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:131:41: note: Function 'operator=' argument 1 names different: declaration 'v' definition 'rhs'.
libStatGen-1.0.14/general/MathVector.cpp:117:45: note: Function 'operator=' argument 1 names different: declaration 'v' definition 'rhs'.
libStatGen-1.0.14/general/MathVector.cpp:308:27: style:inconclusive: Function 'Print' argument 1 names different: declaration 'output' definition 'f'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:213:23: note: Function 'Print' argument 1 names different: declaration 'output' definition 'f'.
libStatGen-1.0.14/general/MathVector.cpp:308:27: note: Function 'Print' argument 1 names different: declaration 'output' definition 'f'.
libStatGen-1.0.14/general/MathVector.cpp:308:34: style:inconclusive: Function 'Print' argument 2 names different: declaration 'maxDim' definition 'd'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:213:35: note: Function 'Print' argument 2 names different: declaration 'maxDim' definition 'd'.
libStatGen-1.0.14/general/MathVector.cpp:308:34: note: Function 'Print' argument 2 names different: declaration 'maxDim' definition 'd'.
libStatGen-1.0.14/general/MathVector.cpp:336:33: style:inconclusive: Function 'BinarySearch' argument 1 names different: declaration 'value' definition 'element'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:219:30: note: Function 'BinarySearch' argument 1 names different: declaration 'value' definition 'element'.
libStatGen-1.0.14/general/MathVector.cpp:336:33: note: Function 'BinarySearch' argument 1 names different: declaration 'value' definition 'element'.
libStatGen-1.0.14/general/MathVector.cpp:358:42: style:inconclusive: Function 'operator==' argument 1 names different: declaration 'v' definition 'rhs'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:132:38: note: Function 'operator==' argument 1 names different: declaration 'v' definition 'rhs'.
libStatGen-1.0.14/general/MathVector.cpp:358:42: note: Function 'operator==' argument 1 names different: declaration 'v' definition 'rhs'.
libStatGen-1.0.14/general/MathVector.cpp:371:35: style:inconclusive: Function 'CountIfGreater' argument 1 names different: declaration 'treshold' definition 'threshold'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:203:32: note: Function 'CountIfGreater' argument 1 names different: declaration 'treshold' definition 'threshold'.
libStatGen-1.0.14/general/MathVector.cpp:371:35: note: Function 'CountIfGreater' argument 1 names different: declaration 'treshold' definition 'threshold'.
libStatGen-1.0.14/general/MathVector.cpp:488:38: style:inconclusive: Function 'Derivative' argument 1 names different: declaration 'point' definition 'x'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:302:40: note: Function 'Derivative' argument 1 names different: declaration 'point' definition 'x'.
libStatGen-1.0.14/general/MathVector.cpp:488:38: note: Function 'Derivative' argument 1 names different: declaration 'point' definition 'x'.
libStatGen-1.0.14/general/MathVector.cpp:488:60: style:inconclusive: Function 'Derivative' argument 3 names different: declaration 'delta' definition 'h_start'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:302:66: note: Function 'Derivative' argument 3 names different: declaration 'delta' definition 'h_start'.
libStatGen-1.0.14/general/MathVector.cpp:488:60: note: Function 'Derivative' argument 3 names different: declaration 'delta' definition 'h_start'.
libStatGen-1.0.14/general/MathVector.cpp:625:37: style:inconclusive: Function 'InsertInSortedList' argument 1 names different: declaration 'item' definition 'value'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MathVector.h:260:35: note: Function 'InsertInSortedList' argument 1 names different: declaration 'item' definition 'value'.
libStatGen-1.0.14/general/MathVector.cpp:625:37: note: Function 'InsertInSortedList' argument 1 names different: declaration 'item' definition 'value'.
libStatGen-1.0.14/general/MathVector.cpp:401:12: style: Local variable 'min' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/MathConstant.h:49:15: note: Shadowed declaration
libStatGen-1.0.14/general/MathVector.cpp:401:12: note: Shadow variable
libStatGen-1.0.14/general/MathVector.cpp:415:12: style: Local variable 'max' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/MathConstant.h:53:15: note: Shadowed declaration
libStatGen-1.0.14/general/MathVector.cpp:415:12: note: Shadow variable
libStatGen-1.0.14/general/MathVector.cpp:548:24: style: Local variable 'error' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/Error.h:25:6: note: Shadowed declaration
libStatGen-1.0.14/general/MathVector.cpp:548:24: note: Shadow variable
libStatGen-1.0.14/general/MathVector.cpp:583:12: style: Local variable 'min' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/MathConstant.h:49:15: note: Shadowed declaration
libStatGen-1.0.14/general/MathVector.cpp:583:12: note: Shadow variable
libStatGen-1.0.14/general/MathVector.cpp:602:12: style: Local variable 'max' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/MathConstant.h:53:15: note: Shadowed declaration
libStatGen-1.0.14/general/MathVector.cpp:602:12: note: Shadow variable
libStatGen-1.0.14/general/MathVector.cpp:170:45: style: Parameter 'v' can be declared with const [constParameter]
libStatGen-1.0.14/general/MemoryAllocators.cpp:130:30: style:inconclusive: Function 'FreeCharCube' argument 1 names different: declaration 'matrix' definition 'cube'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MemoryAllocators.h:43:34: note: Function 'FreeCharCube' argument 1 names different: declaration 'matrix' definition 'cube'.
libStatGen-1.0.14/general/MemoryAllocators.cpp:130:30: note: Function 'FreeCharCube' argument 1 names different: declaration 'matrix' definition 'cube'.
libStatGen-1.0.14/general/MemoryMap.h:177:10: style:inconclusive: Technically the member function 'MemoryMap::debug_print' can be const. [functionConst]
libStatGen-1.0.14/general/MemoryMap.cpp:60:17: note: Technically the member function 'MemoryMap::debug_print' can be const.
libStatGen-1.0.14/general/MemoryMap.h:177:10: note: Technically the member function 'MemoryMap::debug_print' can be const.
libStatGen-1.0.14/general/MemoryMapArray.cpp:59:17: warning: Assert statement calls a function which may have desired side effects: 'create'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:74:17: warning: Assert statement calls a function which may have desired side effects: 'open'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:86:17: warning: Assert statement calls a function which may have desired side effects: 'create'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:102:17: warning: Assert statement calls a function which may have desired side effects: 'open'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:114:17: warning: Assert statement calls a function which may have desired side effects: 'create'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:139:17: warning: Assert statement calls a function which may have desired side effects: 'open'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:150:17: warning: Assert statement calls a function which may have desired side effects: 'create'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:168:17: warning: Assert statement calls a function which may have desired side effects: 'open'. [assertWithSideEffect]
libStatGen-1.0.14/general/MemoryMapArray.cpp:28:33: style: Obsolete function 'asctime' called. It is recommended to use 'strftime' instead. [prohibitedasctimeCalled]
libStatGen-1.0.14/general/MemoryMapArray.cpp:28:41: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled]
libStatGen-1.0.14/general/MemoryMapArray.cpp:45:32: style: Obsolete function 'asctime' called. It is recommended to use 'strftime' instead. [prohibitedasctimeCalled]
libStatGen-1.0.14/general/MemoryMapArray.cpp:45:40: portability: Non reentrant function 'localtime' called. For threadsafe applications it is recommended to use the reentrant replacement function 'localtime_r'. [prohibitedlocaltimeCalled]
libStatGen-1.0.14/general/MemoryMapArray.cpp:35:72: style: Parameter 'h' can be declared with const [constParameter]
libStatGen-1.0.14/general/MiniDeflate.cpp:31:5: warning: Class 'MiniDeflate' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/MiniDeflate.cpp:31:5: warning: Class 'MiniDeflate' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/MiniDeflate.cpp:309:16: style: Redundant initialization for 'buffer_len'. The initialized value is overwritten before it is read. [redundantInitialization]
libStatGen-1.0.14/general/MiniDeflate.cpp:307:20: note: buffer_len is initialized
libStatGen-1.0.14/general/MiniDeflate.cpp:309:16: note: buffer_len is overwritten
libStatGen-1.0.14/general/MiniDeflate.cpp:153:49: style:inconclusive: Function 'Deflate' argument 2 names different: declaration 'input' definition 'void_input'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MiniDeflate.h:45:40: note: Function 'Deflate' argument 2 names different: declaration 'input' definition 'void_input'.
libStatGen-1.0.14/general/MiniDeflate.cpp:153:49: note: Function 'Deflate' argument 2 names different: declaration 'input' definition 'void_input'.
libStatGen-1.0.14/general/MiniDeflate.cpp:153:68: style:inconclusive: Function 'Deflate' argument 3 names different: declaration 'bytes' definition 'len'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MiniDeflate.h:45:54: note: Function 'Deflate' argument 3 names different: declaration 'bytes' definition 'len'.
libStatGen-1.0.14/general/MiniDeflate.cpp:153:68: note: Function 'Deflate' argument 3 names different: declaration 'bytes' definition 'len'.
libStatGen-1.0.14/general/MiniDeflate.cpp:303:48: style:inconclusive: Function 'Inflate' argument 2 names different: declaration 'ouput' definition 'void_output'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MiniDeflate.h:46:39: note: Function 'Inflate' argument 2 names different: declaration 'ouput' definition 'void_output'.
libStatGen-1.0.14/general/MiniDeflate.cpp:303:48: note: Function 'Inflate' argument 2 names different: declaration 'ouput' definition 'void_output'.
libStatGen-1.0.14/general/MiniDeflate.cpp:303:68: style:inconclusive: Function 'Inflate' argument 3 names different: declaration 'bytes' definition 'len'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/MiniDeflate.h:46:53: note: Function 'Inflate' argument 3 names different: declaration 'bytes' definition 'len'.
libStatGen-1.0.14/general/MiniDeflate.cpp:303:68: note: Function 'Inflate' argument 3 names different: declaration 'bytes' definition 'len'.
libStatGen-1.0.14/general/Parameters.cpp:573:13: style: Incrementing a variable of type 'bool' with postfix operator++ is deprecated by the C++ Standard. You should assign it the value 'true' instead. [incrementboolean]
libStatGen-1.0.14/general/Parameters.cpp:36:5: warning: Class 'Parameter' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/Parameters.cpp:36:5: warning: Class 'Parameter' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/Parameters.h:313:9: warning: Class 'ParameterList' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/Parameters.h:313:9: warning: Class 'ParameterList' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/Parameters.h:100:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:100:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:103:18: style: The function 'Translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:41:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:103:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:104:18: style: The function 'TranslateExtras' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:42:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:104:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:114:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:100:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:114:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:125:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:125:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:128:18: style: The function 'Translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:41:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:128:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:138:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:125:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:138:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:146:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:146:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:156:18: style: The function 'Translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:41:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:156:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:157:18: style: The function 'TranslateExtras' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:42:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:157:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:169:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:146:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:169:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:181:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:181:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:186:18: style: The function 'Translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:41:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:186:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:187:18: style: The function 'TranslateExtras' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:42:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:187:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:197:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:181:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:197:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:215:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:215:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:220:18: style: The function 'Translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:41:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:220:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:228:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:228:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:233:18: style: The function 'Translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:41:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:233:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:270:18: style: The function 'Status' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:270:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:271:18: style: The function 'addParamsToString' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:62:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:271:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:288:18: style: The function 'Translate' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:41:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:288:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.h:289:18: style: The function 'TranslateExtras' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/Parameters.h:42:18: note: Virtual function in base class
libStatGen-1.0.14/general/Parameters.h:289:18: note: Function in derived class
libStatGen-1.0.14/general/Parameters.cpp:174:18: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:184:18: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:194:39: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:391:15: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:403:15: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:436:15: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:458:15: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:466:15: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:484:10: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:527:30: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Parameters.cpp:406:18: style: Variable 'ptr->touched' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/Parameters.cpp:404:22: note: ptr->touched is assigned
libStatGen-1.0.14/general/Parameters.cpp:406:18: note: ptr->touched is overwritten
libStatGen-1.0.14/general/Parameters.cpp:291:71: style:inconclusive: Function 'LongParameters' argument 2 names different: declaration 'list' definition 'lst'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:268:59: note: Function 'LongParameters' argument 2 names different: declaration 'list' definition 'lst'.
libStatGen-1.0.14/general/Parameters.cpp:291:71: note: Function 'LongParameters' argument 2 names different: declaration 'list' definition 'lst'.
libStatGen-1.0.14/general/Parameters.cpp:351:52: style:inconclusive: Function 'ExplainAmbiguity' argument 1 names different: declaration 'value' definition 'cstr'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:291:40: note: Function 'ExplainAmbiguity' argument 1 names different: declaration 'value' definition 'cstr'.
libStatGen-1.0.14/general/Parameters.cpp:351:52: note: Function 'ExplainAmbiguity' argument 1 names different: declaration 'value' definition 'cstr'.
libStatGen-1.0.14/general/Parameters.cpp:375:45: style:inconclusive: Function 'Translate' argument 1 names different: declaration 'value' definition 'cstr'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:288:41: note: Function 'Translate' argument 1 names different: declaration 'value' definition 'cstr'.
libStatGen-1.0.14/general/Parameters.cpp:375:45: note: Function 'Translate' argument 1 names different: declaration 'value' definition 'cstr'.
libStatGen-1.0.14/general/Parameters.cpp:440:51: style:inconclusive: Function 'TranslateExtras' argument 1 names different: declaration 'value' definition 'cstr'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:289:47: note: Function 'TranslateExtras' argument 1 names different: declaration 'value' definition 'cstr'.
libStatGen-1.0.14/general/Parameters.cpp:440:51: note: Function 'TranslateExtras' argument 1 names different: declaration 'value' definition 'cstr'.
libStatGen-1.0.14/general/Parameters.cpp:824:66: style:inconclusive: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:336:55: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:824:66: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:841:64: style:inconclusive: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:337:53: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:841:64: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:858:70: style:inconclusive: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:338:59: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:858:70: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:875:76: style:inconclusive: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Parameters.h:339:65: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:875:76: note: Function 'Enforce' argument 3 names different: declaration 'reason' definition 'format'.
libStatGen-1.0.14/general/Parameters.cpp:630:20: style: Local variable 'warning' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/Error.h:26:6: note: Shadowed declaration
libStatGen-1.0.14/general/Parameters.cpp:630:20: note: Shadow variable
libStatGen-1.0.14/general/Parameters.cpp:730:55: style: Parameter 'argv' can be declared with const [constParameter]
libStatGen-1.0.14/general/Pedigree.h:64:10: performance:inconclusive: Technically the member function 'Pedigree::PrepareDichotomization' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/Pedigree.cpp:450:16: note: Technically the member function 'Pedigree::PrepareDichotomization' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/Pedigree.h:64:10: note: Technically the member function 'Pedigree::PrepareDichotomization' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/Pedigree.h:68:10: style:inconclusive: Technically the member function 'Pedigree::WriteDataFile' can be const. [functionConst]
libStatGen-1.0.14/general/Pedigree.cpp:324:16: note: Technically the member function 'Pedigree::WriteDataFile' can be const.
libStatGen-1.0.14/general/Pedigree.h:68:10: note: Technically the member function 'Pedigree::WriteDataFile' can be const.
libStatGen-1.0.14/general/Pedigree.h:77:10: style:inconclusive: Technically the member function 'Pedigree::WriteRecodedPerson' can be const. [functionConst]
libStatGen-1.0.14/general/Pedigree.cpp:370:16: note: Technically the member function 'Pedigree::WriteRecodedPerson' can be const.
libStatGen-1.0.14/general/Pedigree.h:77:10: note: Technically the member function 'Pedigree::WriteRecodedPerson' can be const.
libStatGen-1.0.14/general/Pedigree.h:133:10: style:inconclusive: Technically the member function 'Pedigree::ShowMemoryInfo' can be const. [functionConst]
libStatGen-1.0.14/general/Pedigree.cpp:940:16: note: Technically the member function 'Pedigree::ShowMemoryInfo' can be const.
libStatGen-1.0.14/general/Pedigree.h:133:10: note: Technically the member function 'Pedigree::ShowMemoryInfo' can be const.
libStatGen-1.0.14/general/Pedigree.cpp:34:5: warning: Class 'Pedigree' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/Pedigree.cpp:34:5: warning: Class 'Pedigree' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/Pedigree.cpp:439:12: warning: Either the condition 'f==NULL' is redundant or there is possible null pointer dereference: f. [nullPointerRedundantCheck]
libStatGen-1.0.14/general/Pedigree.cpp:437:11: note: Assuming that condition 'f==NULL' is not redundant
libStatGen-1.0.14/general/Pedigree.cpp:439:12: note: Null pointer dereference
libStatGen-1.0.14/general/Pedigree.cpp:447:12: warning: Either the condition 'f==NULL' is redundant or there is possible null pointer dereference: f. [nullPointerRedundantCheck]
libStatGen-1.0.14/general/Pedigree.cpp:445:11: note: Assuming that condition 'f==NULL' is not redundant
libStatGen-1.0.14/general/Pedigree.cpp:447:12: note: Null pointer dereference
libStatGen-1.0.14/general/Pedigree.cpp:388:18: style: The scope of the variable 'twinCodes' can be reduced. [variableScope]
libStatGen-1.0.14/general/Pedigree.cpp:230:35: style:inconclusive: Function 'LumpAlleles' argument 1 names different: declaration 'treshold' definition 'min'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Pedigree.h:96:29: note: Function 'LumpAlleles' argument 1 names different: declaration 'treshold' definition 'min'.
libStatGen-1.0.14/general/Pedigree.cpp:230:35: note: Function 'LumpAlleles' argument 1 names different: declaration 'treshold' definition 'min'.
libStatGen-1.0.14/general/Pedigree.cpp:364:47: style:inconclusive: Function 'WritePerson' argument 2 names different: declaration 'who' definition 'person'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Pedigree.h:72:41: note: Function 'WritePerson' argument 2 names different: declaration 'who' definition 'person'.
libStatGen-1.0.14/general/Pedigree.cpp:364:47: note: Function 'WritePerson' argument 2 names different: declaration 'who' definition 'person'.
libStatGen-1.0.14/general/Pedigree.cpp:371:24: style:inconclusive: Function 'WriteRecodedPerson' argument 2 names different: declaration 'who' definition 'person'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Pedigree.h:78:28: note: Function 'WriteRecodedPerson' argument 2 names different: declaration 'who' definition 'person'.
libStatGen-1.0.14/general/Pedigree.cpp:371:24: note: Function 'WriteRecodedPerson' argument 2 names different: declaration 'who' definition 'person'.
libStatGen-1.0.14/general/Pedigree.cpp:460:31: style:inconclusive: Function 'Dichotomize' argument 1 names different: declaration 'trait' definition 't'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Pedigree.h:65:26: note: Function 'Dichotomize' argument 1 names different: declaration 'trait' definition 't'.
libStatGen-1.0.14/general/Pedigree.cpp:460:31: note: Function 'Dichotomize' argument 1 names different: declaration 'trait' definition 't'.
libStatGen-1.0.14/general/Pedigree.cpp:885:49: style:inconclusive: Function 'ExtractFamily' argument 2 names different: declaration 'new_ped' definition 'single_fam_ped'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Pedigree.h:125:43: note: Function 'ExtractFamily' argument 2 names different: declaration 'new_ped' definition 'single_fam_ped'.
libStatGen-1.0.14/general/Pedigree.cpp:885:49: note: Function 'ExtractFamily' argument 2 names different: declaration 'new_ped' definition 'single_fam_ped'.
libStatGen-1.0.14/general/Pedigree.cpp:908:34: style: Parameter 'filter' can be declared with const [constParameter]
libStatGen-1.0.14/general/QuickIndex.h:31:5: style: Class 'QuickIndex' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/QuickIndex.h:35:5: style: Class 'QuickIndex' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/QuickIndex.h:39:5: style: Class 'QuickIndex' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/PedigreeDescription.cpp:39:44: warning:inconclusive: Member variable 'PedigreeDescription::mendelFormat' is not assigned a value in 'PedigreeDescription::operator='. [operatorEqVarError]
libStatGen-1.0.14/general/PedigreeDescription.h:64:9: style:inconclusive: Technically the member function 'PedigreeDescription::CountTextColumns' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeDescription.cpp:294:26: note: Technically the member function 'PedigreeDescription::CountTextColumns' can be const.
libStatGen-1.0.14/general/PedigreeDescription.h:64:9: note: Technically the member function 'PedigreeDescription::CountTextColumns' can be const.
libStatGen-1.0.14/general/PedigreeDescription.h:83:9: performance:inconclusive: Technically the member function 'PedigreeDescription::ReadLineHelper' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/PedigreeDescription.cpp:633:26: note: Technically the member function 'PedigreeDescription::ReadLineHelper' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/PedigreeDescription.h:83:9: note: Technically the member function 'PedigreeDescription::ReadLineHelper' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/PedigreeDescription.h:85:9: style:inconclusive: Technically the member function 'PedigreeDescription::CountColumns' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreeDescription.cpp:813:26: note: Technically the member function 'PedigreeDescription::CountColumns' can be const.
libStatGen-1.0.14/general/PedigreeDescription.h:85:9: note: Technically the member function 'PedigreeDescription::CountColumns' can be const.
libStatGen-1.0.14/general/PedigreeDescription.cpp:695:9: style: The scope of the variable 'phenoCount' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeDescription.cpp:696:9: style: The scope of the variable 'alleleCount' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeDescription.cpp:49:40: style:inconclusive: Function 'Load' argument 1 names different: declaration 'Input' definition 'input'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeDescription.h:50:23: note: Function 'Load' argument 1 names different: declaration 'Input' definition 'input'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:49:40: note: Function 'Load' argument 1 names different: declaration 'Input' definition 'input'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:178:45: style:inconclusive: Function 'Load' argument 1 names different: declaration 'filename' definition 'iFilename'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeDescription.h:51:28: note: Function 'Load' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:178:45: note: Function 'Load' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:201:48: style:inconclusive: Function 'LoadMap' argument 1 names different: declaration 'filename' definition 'iFilename'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeDescription.h:60:31: note: Function 'LoadMap' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:201:48: note: Function 'LoadMap' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:216:43: style:inconclusive: Function 'LoadMap' argument 1 names different: declaration 'Input' definition 'input'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeDescription.h:59:26: note: Function 'LoadMap' argument 1 names different: declaration 'Input' definition 'input'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:216:43: note: Function 'LoadMap' argument 1 names different: declaration 'Input' definition 'input'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:305:60: style:inconclusive: Function 'LoadLinkageDataFile' argument 1 names different: declaration 'filename' definition 'iFilename'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeDescription.h:54:43: note: Function 'LoadLinkageDataFile' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:305:60: note: Function 'LoadLinkageDataFile' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:659:59: style:inconclusive: Function 'LoadMendelDataFile' argument 1 names different: declaration 'filename' definition 'iFilename'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeDescription.h:57:42: note: Function 'LoadMendelDataFile' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:659:59: note: Function 'LoadMendelDataFile' argument 1 names different: declaration 'filename' definition 'iFilename'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:674:54: style:inconclusive: Function 'LoadMendelDataFile' argument 1 names different: declaration 'input' definition 'file'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeDescription.h:56:37: note: Function 'LoadMendelDataFile' argument 1 names different: declaration 'input' definition 'file'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:674:54: note: Function 'LoadMendelDataFile' argument 1 names different: declaration 'input' definition 'file'.
libStatGen-1.0.14/general/PedigreeDescription.cpp:39:78: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/PedigreeFamily.cpp:35:5: warning: Class 'Family' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:27: style:inconclusive: Function 'Family' argument 1 names different: declaration 'ped' definition 'pedigree'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeFamily.h:51:23: note: Function 'Family' argument 1 names different: declaration 'ped' definition 'pedigree'.
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:27: note: Function 'Family' argument 1 names different: declaration 'ped' definition 'pedigree'.
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:41: style:inconclusive: Function 'Family' argument 2 names different: declaration 'top' definition '_first'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeFamily.h:51:32: note: Function 'Family' argument 2 names different: declaration 'top' definition '_first'.
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:41: note: Function 'Family' argument 2 names different: declaration 'top' definition '_first'.
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:53: style:inconclusive: Function 'Family' argument 3 names different: declaration 'bottom' definition '_last'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeFamily.h:51:41: note: Function 'Family' argument 3 names different: declaration 'bottom' definition '_last'.
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:53: note: Function 'Family' argument 3 names different: declaration 'bottom' definition '_last'.
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:64: style:inconclusive: Function 'Family' argument 4 names different: declaration 'serial' definition '_serial'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeFamily.h:51:53: note: Function 'Family' argument 4 names different: declaration 'serial' definition '_serial'.
libStatGen-1.0.14/general/PedigreeFamily.cpp:28:64: note: Function 'Family' argument 4 names different: declaration 'serial' definition '_serial'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:733:12: warning: Either the condition 'output==NULL' is redundant or there is possible null pointer dereference: output. [nullPointerRedundantCheck]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:729:16: note: Assuming that condition 'output==NULL' is not redundant
libStatGen-1.0.14/general/PedigreeGlobals.cpp:733:12: note: Null pointer dereference
libStatGen-1.0.14/general/PedigreeGlobals.cpp:771:12: warning: Either the condition 'output==NULL' is redundant or there is possible null pointer dereference: output. [nullPointerRedundantCheck]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:767:16: note: Assuming that condition 'output==NULL' is not redundant
libStatGen-1.0.14/general/PedigreeGlobals.cpp:771:12: note: Null pointer dereference
libStatGen-1.0.14/general/PedigreeGlobals.cpp:218:25: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:265:9: style: The scope of the variable 'skipped_markers' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:399:12: style: The scope of the variable 'curr_female' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:399:25: style: The scope of the variable 'curr_male' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:402:12: style: The scope of the variable 'curr_chromosome' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:474:18: style: The scope of the variable 'j' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeGlobals.cpp:236:49: style:inconclusive: Function 'GetMarkerInfo' argument 1 names different: declaration 'marker' definition 'markerId'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:175:43: note: Function 'GetMarkerInfo' argument 1 names different: declaration 'marker' definition 'markerId'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:236:49: note: Function 'GetMarkerInfo' argument 1 names different: declaration 'marker' definition 'markerId'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:462:53: style:inconclusive: Function 'LoadAlleleFrequencies' argument 1 names different: declaration 'file' definition 'input'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:187:47: note: Function 'LoadAlleleFrequencies' argument 1 names different: declaration 'file' definition 'input'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:462:53: note: Function 'LoadAlleleFrequencies' argument 1 names different: declaration 'file' definition 'input'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:569:45: style:inconclusive: Function 'LoadMarkerMap' argument 1 names different: declaration 'file' definition 'input'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:190:39: note: Function 'LoadMarkerMap' argument 1 names different: declaration 'file' definition 'input'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:569:45: note: Function 'LoadMarkerMap' argument 1 names different: declaration 'file' definition 'input'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:667:47: style:inconclusive: Function 'LoadBasepairMap' argument 1 names different: declaration 'file' definition 'input'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:193:41: note: Function 'LoadBasepairMap' argument 1 names different: declaration 'file' definition 'input'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:667:47: note: Function 'LoadBasepairMap' argument 1 names different: declaration 'file' definition 'input'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:736:43: style:inconclusive: Function 'WriteMapFile' argument 1 names different: declaration 'file' definition 'output'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:196:37: note: Function 'WriteMapFile' argument 1 names different: declaration 'file' definition 'output'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:736:43: note: Function 'WriteMapFile' argument 1 names different: declaration 'file' definition 'output'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:774:44: style:inconclusive: Function 'WriteFreqFile' argument 1 names different: declaration 'file' definition 'output'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:199:38: note: Function 'WriteFreqFile' argument 1 names different: declaration 'file' definition 'output'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:774:44: note: Function 'WriteFreqFile' argument 1 names different: declaration 'file' definition 'output'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:815:54: style:inconclusive: Function 'LoadAllele' argument 2 names different: declaration 'label' definition 'token'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:201:49: note: Function 'LoadAllele' argument 2 names different: declaration 'label' definition 'token'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:815:54: note: Function 'LoadAllele' argument 2 names different: declaration 'label' definition 'token'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:820:61: style:inconclusive: Function 'LoadAllele' argument 2 names different: declaration 'label' definition 'token'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/PedigreeGlobals.h:202:56: note: Function 'LoadAllele' argument 2 names different: declaration 'label' definition 'token'.
libStatGen-1.0.14/general/PedigreeGlobals.cpp:820:61: note: Function 'LoadAllele' argument 2 names different: declaration 'label' definition 'token'.
libStatGen-1.0.14/general/Pedigree.h:62:10: performance:inconclusive: Technically the member function 'Pedigree::TranslateSexCode' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/PedigreeLoader.cpp:619:15: note: Technically the member function 'Pedigree::TranslateSexCode' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/Pedigree.h:62:10: note: Technically the member function 'Pedigree::TranslateSexCode' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/PedigreeLoader.cpp:331:12: style: The scope of the variable 'familySize' can be reduced. [variableScope]
libStatGen-1.0.14/general/PedigreeLoader.cpp:533:37: style:inconclusive: Function 'Prepare' argument 1 names different: declaration 'input' definition 'filename'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Pedigree.h:55:31: note: Function 'Prepare' argument 1 names different: declaration 'input' definition 'filename'.
libStatGen-1.0.14/general/PedigreeLoader.cpp:533:37: note: Function 'Prepare' argument 1 names different: declaration 'input' definition 'filename'.
libStatGen-1.0.14/general/PedigreeLoader.cpp:564:34: style:inconclusive: Function 'Load' argument 1 names different: declaration 'input' definition 'filename'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/Pedigree.h:59:28: note: Function 'Load' argument 1 names different: declaration 'input' definition 'filename'.
libStatGen-1.0.14/general/PedigreeLoader.cpp:564:34: note: Function 'Load' argument 1 names different: declaration 'input' definition 'filename'.
libStatGen-1.0.14/general/PedigreePerson.h:131:10: style:inconclusive: Technically the member function 'Person::haveData' can be const. [functionConst]
libStatGen-1.0.14/general/PedigreePerson.cpp:201:14: note: Technically the member function 'Person::haveData' can be const.
libStatGen-1.0.14/general/PedigreePerson.h:131:10: note: Technically the member function 'Person::haveData' can be const.
libStatGen-1.0.14/general/PedigreePerson.cpp:33:5: warning: Class 'Person' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/PedigreePerson.cpp:33:5: warning: Class 'Person' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/PedigreePerson.cpp:70:38: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/PedigreePerson.cpp:97:31: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/Pedigree.h:147:10: performance:inconclusive: Technically the member function 'Pedigree::ShowTrimHeader' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/PedigreeTrim.cpp:20:16: note: Technically the member function 'Pedigree::ShowTrimHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/Pedigree.h:147:10: note: Technically the member function 'Pedigree::ShowTrimHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/PedigreeTrim.cpp:29:39: style: Parameter 'informative' can be declared with const [constParameter]
libStatGen-1.0.14/general/QuickIndex.h:54:10: style:inconclusive: Technically the member function 'QuickIndex::IsBefore' can be const. [functionConst]
libStatGen-1.0.14/general/QuickIndex.cpp:89:18: note: Technically the member function 'QuickIndex::IsBefore' can be const.
libStatGen-1.0.14/general/QuickIndex.h:54:10: note: Technically the member function 'QuickIndex::IsBefore' can be const.
libStatGen-1.0.14/general/QuickIndex.cpp:98:38: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/QuickIndex.cpp:103:40: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/QuickIndex.cpp:108:43: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Random.cpp:89:9: warning: Member variable 'Random::seed' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/Random.cpp:89:9: warning: Member variable 'Random::last' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/Random.cpp:89:9: warning: Member variable 'Random::shuffler' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/Random.cpp:89:9: warning: Member variable 'Random::normStore' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/Random.cpp:92:5: warning: Class 'Random' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/Random.cpp:92:5: warning: Class 'Random' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/Random.cpp:398:10: warning: Redundant assignment of 'sum' to itself. [selfAssignment]
libStatGen-1.0.14/general/Random.cpp:160:26: style: The scope of the variable 'mag01' can be reduced. [variableScope]
libStatGen-1.0.14/general/Random.cpp:207:26: style: The scope of the variable 'mag01' can be reduced. [variableScope]
libStatGen-1.0.14/general/Random.cpp:292:12: style: The scope of the variable 'v1' can be reduced. [variableScope]
libStatGen-1.0.14/general/Random.cpp:292:16: style: The scope of the variable 'v2' can be reduced. [variableScope]
libStatGen-1.0.14/general/Random.cpp:292:20: style: The scope of the variable 'fac' can be reduced. [variableScope]
libStatGen-1.0.14/general/Random.cpp:292:25: style: The scope of the variable 'rsq' can be reduced. [variableScope]
libStatGen-1.0.14/general/Random.cpp:391:22: style: Local variable 'i' shadows outer variable [shadowVariable]
libStatGen-1.0.14/general/Random.cpp:368:29: note: Shadowed declaration
libStatGen-1.0.14/general/Random.cpp:391:22: note: Shadow variable
libStatGen-1.0.14/general/Random.cpp:160:26: style: Variable 'mag01' can be declared with const [constVariable]
libStatGen-1.0.14/general/Random.cpp:341:42: style: Parameter 'weights' can be declared with const [constParameter]
libStatGen-1.0.14/general/Random.cpp:207:26: style: Variable 'mag01' can be declared with const [constVariable]
libStatGen-1.0.14/general/ReferenceSequence.h:253:17: style:inconclusive: Technically the member function 'PackedSequenceData::operator[]' can be const. [functionConst]
libStatGen-1.0.14/general/PackedVector.h:77:12: style:inconclusive: Technically the member function 'PackedVector < PackedAccess_4Bit , PackedAssign_4Bit , Packed4BitElementCount2Bytes >::size' can be const. [functionConst]
libStatGen-1.0.14/general/SmithWaterman.h:204:5: warning: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::maxCostValue' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/SmithWaterman.h:211:5: warning: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::H' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/SmithWaterman.h:211:5: warning: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::gapOpenCount' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/SmithWaterman.h:211:5: warning: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::gapCloseCount' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/SmithWaterman.h:211:5: warning: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::gapExtendCount' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/SmithWaterman.h:157:14: style:inconclusive: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::B' is in the wrong place in the initializer list. [initializerList]
libStatGen-1.0.14/general/SmithWaterman.h:223:13: note: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::B' is in the wrong place in the initializer list.
libStatGen-1.0.14/general/SmithWaterman.h:157:14: note: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::B' is in the wrong place in the initializer list.
libStatGen-1.0.14/general/SmithWaterman.h:161:19: style:inconclusive: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::MOffset' is in the wrong place in the initializer list. [initializerList]
libStatGen-1.0.14/general/SmithWaterman.h:228:13: note: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::MOffset' is in the wrong place in the initializer list.
libStatGen-1.0.14/general/SmithWaterman.h:161:19: note: Member variable 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::MOffset' is in the wrong place in the initializer list.
libStatGen-1.0.14/general/SmithWaterman.h:334:10: style:inconclusive: Technically the member function 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::printH' can be const. [functionConst]
libStatGen-1.0.14/general/SmithWaterman.h:680:9: style:inconclusive: Technically the member function 'SmithWaterman < 256 , 1024 , uint16_t , const char * , const char * , const char * , uint32_t , uint32_t >::getSoftClipCount' can be const. [functionConst]
libStatGen-1.0.14/general/SmithWaterman.h:394:11: style: Redundant initialization for 'i'. The initialized value is overwritten before it is read. [redundantInitialization]
libStatGen-1.0.14/general/SmithWaterman.h:392:15: note: i is initialized
libStatGen-1.0.14/general/SmithWaterman.h:394:11: note: i is overwritten
libStatGen-1.0.14/general/SmithWaterman.h:395:11: style: Redundant initialization for 'j'. The initialized value is overwritten before it is read. [redundantInitialization]
libStatGen-1.0.14/general/SmithWaterman.h:392:22: note: j is initialized
libStatGen-1.0.14/general/SmithWaterman.h:395:11: note: j is overwritten
libStatGen-1.0.14/general/SmithWaterman.h:635:15: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/SmithWaterman.h:633:11: note: i is assigned
libStatGen-1.0.14/general/SmithWaterman.h:635:15: note: i is overwritten
libStatGen-1.0.14/general/SmithWaterman.h:682:9: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
libStatGen-1.0.14/general/SmithWaterman.h:687:9: note: Found duplicate branches for 'if' and 'else'.
libStatGen-1.0.14/general/SmithWaterman.h:682:9: note: Found duplicate branches for 'if' and 'else'.
libStatGen-1.0.14/general/SmithWaterman.cpp:107:98: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/SmithWaterman.h:377:93: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/SmithWaterman.h:459:62: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/SmithWaterman.h:502:60: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/SmithWaterman.h:578:62: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/SmithWaterman.h:637:17: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/StatGenStatus.cpp:196:40: style:inconclusive: Function 'handleError' argument 1 names different: declaration 'newType' definition 'newStatus'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StatGenStatus.h:102:29: note: Function 'handleError' argument 1 names different: declaration 'newType' definition 'newStatus'.
libStatGen-1.0.14/general/StatGenStatus.cpp:196:40: note: Function 'handleError' argument 1 names different: declaration 'newType' definition 'newStatus'.
libStatGen-1.0.14/general/StringAlias.cpp:21:37: style: Parameter 'string' can be declared with const [constParameter]
libStatGen-1.0.14/general/StringAlias.cpp:21:54: style: Parameter 'alias' can be declared with const [constParameter]
libStatGen-1.0.14/general/StringArray.h:54:10: style:inconclusive: Technically the member function 'StringArray::Print' can be const. [functionConst]
libStatGen-1.0.14/general/StringArray.cpp:423:19: note: Technically the member function 'StringArray::Print' can be const.
libStatGen-1.0.14/general/StringArray.h:54:10: note: Technically the member function 'StringArray::Print' can be const.
libStatGen-1.0.14/general/StringArray.cpp:39:40: style:inconclusive: Function 'StringArray' argument 1 names different: declaration 'original' definition 'rhs'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringArray.h:34:31: note: Function 'StringArray' argument 1 names different: declaration 'original' definition 'rhs'.
libStatGen-1.0.14/general/StringArray.cpp:39:40: note: Function 'StringArray' argument 1 names different: declaration 'original' definition 'rhs'.
libStatGen-1.0.14/general/StringArray.cpp:363:30: style:inconclusive: Function 'Delete' argument 1 names different: declaration 'position' definition 'index'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringArray.h:101:21: note: Function 'Delete' argument 1 names different: declaration 'position' definition 'index'.
libStatGen-1.0.14/general/StringArray.cpp:363:30: note: Function 'Delete' argument 1 names different: declaration 'position' definition 'index'.
libStatGen-1.0.14/general/StringArray.cpp:423:32: style:inconclusive: Function 'Print' argument 1 names different: declaration 'f' definition 'output'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringArray.h:54:23: note: Function 'Print' argument 1 names different: declaration 'f' definition 'output'.
libStatGen-1.0.14/general/StringArray.cpp:423:32: note: Function 'Print' argument 1 names different: declaration 'f' definition 'output'.
libStatGen-1.0.14/general/StringArray.cpp:434:36: style:inconclusive: Function 'PrintLine' argument 1 names different: declaration 'f' definition 'output'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringArray.h:55:27: note: Function 'PrintLine' argument 1 names different: declaration 'f' definition 'output'.
libStatGen-1.0.14/general/StringArray.cpp:434:36: note: Function 'PrintLine' argument 1 names different: declaration 'f' definition 'output'.
libStatGen-1.0.14/general/StringBasics.cpp:1170:31: style: Array index 'd' is used before limits check. [arrayIndexThenCheck]
libStatGen-1.0.14/general/StringBasics.cpp:1189:31: style: Array index 'd' is used before limits check. [arrayIndexThenCheck]
libStatGen-1.0.14/general/StringBasics.h:81:14: style:inconclusive: Technically the member function 'String::AsUpper' can be const. [functionConst]
libStatGen-1.0.14/general/StringBasics.cpp:168:16: note: Technically the member function 'String::AsUpper' can be const.
libStatGen-1.0.14/general/StringBasics.h:81:14: note: Technically the member function 'String::AsUpper' can be const.
libStatGen-1.0.14/general/StringBasics.h:82:14: style:inconclusive: Technically the member function 'String::AsLower' can be const. [functionConst]
libStatGen-1.0.14/general/StringBasics.cpp:175:16: note: Technically the member function 'String::AsLower' can be const.
libStatGen-1.0.14/general/StringBasics.h:82:14: note: Technically the member function 'String::AsLower' can be const.
libStatGen-1.0.14/general/StringBasics.h:83:14: style:inconclusive: Technically the member function 'String::Capitalize' can be const. [functionConst]
libStatGen-1.0.14/general/StringBasics.cpp:182:16: note: Technically the member function 'String::Capitalize' can be const.
libStatGen-1.0.14/general/StringBasics.h:83:14: note: Technically the member function 'String::Capitalize' can be const.
libStatGen-1.0.14/general/StringBasics.h:346:12: style:inconclusive: Technically the member function 'String::IsNumber' can be const. [functionConst]
libStatGen-1.0.14/general/StringBasics.cpp:1494:14: note: Technically the member function 'String::IsNumber' can be const.
libStatGen-1.0.14/general/StringBasics.h:346:12: note: Technically the member function 'String::IsNumber' can be const.
libStatGen-1.0.14/general/StringBasics.cpp:1211:30: warning: Identical inner 'return' condition is always true. [identicalInnerCondition]
libStatGen-1.0.14/general/StringBasics.cpp:1210:23: note: outer condition: buffer[i]-stem[i]
libStatGen-1.0.14/general/StringBasics.cpp:1211:30: note: identical inner condition: buffer[i]-stem[i]
libStatGen-1.0.14/general/StringBasics.cpp:1235:30: warning: Identical inner 'return' condition is always true. [identicalInnerCondition]
libStatGen-1.0.14/general/StringBasics.cpp:1234:23: note: outer condition: buffer[i]-stem.buffer[i]
libStatGen-1.0.14/general/StringBasics.cpp:1235:30: note: identical inner condition: buffer[i]-stem.buffer[i]
libStatGen-1.0.14/general/StringBasics.cpp:1259:30: warning: Identical inner 'return' condition is always true. [identicalInnerCondition]
libStatGen-1.0.14/general/StringBasics.cpp:1258:23: note: outer condition: buffer[i]-stem[i]
libStatGen-1.0.14/general/StringBasics.cpp:1259:30: note: identical inner condition: buffer[i]-stem[i]
libStatGen-1.0.14/general/StringBasics.cpp:127:56: style:inconclusive: Function 'Copy' argument 3 names different: declaration 'count' definition 'n'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:72:52: note: Function 'Copy' argument 3 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:127:56: note: Function 'Copy' argument 3 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:390:31: style:inconclusive: Function 'LockBuffer' argument 1 names different: declaration 'size' definition 'min'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:235:27: note: Function 'LockBuffer' argument 1 names different: declaration 'size' definition 'min'.
libStatGen-1.0.14/general/StringBasics.cpp:390:31: note: Function 'LockBuffer' argument 1 names different: declaration 'size' definition 'min'.
libStatGen-1.0.14/general/StringBasics.cpp:405:36: style:inconclusive: Function 'Compare' argument 1 names different: declaration 'rhs' definition 's'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:117:32: note: Function 'Compare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:405:36: note: Function 'Compare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:413:34: style:inconclusive: Function 'Compare' argument 1 names different: declaration 'rhs' definition 's'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:121:30: note: Function 'Compare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:413:34: note: Function 'Compare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:418:40: style:inconclusive: Function 'FastCompare' argument 1 names different: declaration 'rhs' definition 's'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:118:36: note: Function 'FastCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:418:40: note: Function 'FastCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:437:38: style:inconclusive: Function 'FastCompare' argument 1 names different: declaration 'rhs' definition 's'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:122:34: note: Function 'FastCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:437:38: note: Function 'FastCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:459:40: style:inconclusive: Function 'SlowCompare' argument 1 names different: declaration 'rhs' definition 's'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:119:36: note: Function 'SlowCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:459:40: note: Function 'SlowCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:478:38: style:inconclusive: Function 'SlowCompare' argument 1 names different: declaration 'rhs' definition 's'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:123:34: note: Function 'SlowCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:478:38: note: Function 'SlowCompare' argument 1 names different: declaration 'rhs' definition 's'.
libStatGen-1.0.14/general/StringBasics.cpp:804:25: style:inconclusive: Function 'Left' argument 1 names different: declaration 'count' definition 'n'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:256:21: note: Function 'Left' argument 1 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:804:25: note: Function 'Left' argument 1 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:814:26: style:inconclusive: Function 'Right' argument 1 names different: declaration 'count' definition 'n'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:257:22: note: Function 'Right' argument 1 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:814:26: note: Function 'Right' argument 1 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:824:38: style:inconclusive: Function 'SubStr' argument 2 names different: declaration 'count' definition 'n'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:259:34: note: Function 'SubStr' argument 2 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:824:38: note: Function 'SubStr' argument 2 names different: declaration 'count' definition 'n'.
libStatGen-1.0.14/general/StringBasics.cpp:894:33: style:inconclusive: Function 'Find' argument 1 names different: declaration 'str' definition 'pattern'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:277:29: note: Function 'Find' argument 1 names different: declaration 'str' definition 'pattern'.
libStatGen-1.0.14/general/StringBasics.cpp:894:33: note: Function 'Find' argument 1 names different: declaration 'str' definition 'pattern'.
libStatGen-1.0.14/general/StringBasics.cpp:901:37: style:inconclusive: Function 'FastFind' argument 1 names different: declaration 'str' definition 'pattern'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:278:33: note: Function 'FastFind' argument 1 names different: declaration 'str' definition 'pattern'.
libStatGen-1.0.14/general/StringBasics.cpp:901:37: note: Function 'FastFind' argument 1 names different: declaration 'str' definition 'pattern'.
libStatGen-1.0.14/general/StringBasics.cpp:914:37: style:inconclusive: Function 'SlowFind' argument 1 names different: declaration 'str' definition 'pattern'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:279:33: note: Function 'SlowFind' argument 1 names different: declaration 'str' definition 'pattern'.
libStatGen-1.0.14/general/StringBasics.cpp:914:37: note: Function 'SlowFind' argument 1 names different: declaration 'str' definition 'pattern'.
libStatGen-1.0.14/general/StringBasics.cpp:1357:50: style:inconclusive: Function 'vprintf' argument 2 names different: declaration 'arglist' definition 'ap'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:332:49: note: Function 'vprintf' argument 2 names different: declaration 'arglist' definition 'ap'.
libStatGen-1.0.14/general/StringBasics.cpp:1357:50: note: Function 'vprintf' argument 2 names different: declaration 'arglist' definition 'ap'.
libStatGen-1.0.14/general/StringBasics.cpp:1413:53: style:inconclusive: Function 'vcatprintf' argument 2 names different: declaration 'arglist' definition 'ap'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringBasics.h:335:52: note: Function 'vcatprintf' argument 2 names different: declaration 'arglist' definition 'ap'.
libStatGen-1.0.14/general/StringBasics.cpp:1413:53: note: Function 'vcatprintf' argument 2 names different: declaration 'arglist' definition 'ap'.
libStatGen-1.0.14/general/StringBasics.cpp:1020:10: style: Local variable 'sign' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/MathConstant.h:45:15: note: Shadowed declaration
libStatGen-1.0.14/general/StringBasics.cpp:1020:10: note: Shadow variable
libStatGen-1.0.14/general/StringBasics.cpp:1078:10: style: Local variable 'sign' shadows outer function [shadowFunction]
libStatGen-1.0.14/general/MathConstant.h:45:15: note: Shadowed declaration
libStatGen-1.0.14/general/StringBasics.cpp:1078:10: note: Shadow variable
libStatGen-1.0.14/general/StringBasics.cpp:515:12: style: Variable 'io' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/StringBasics.cpp:539:30: style: Variable 'io' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/StringBasics.cpp:540:30: style: Variable 'io' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/StringHash.h:159:12: style:inconclusive: Technically the member function 'StringHash::StringList' can be const. [functionConst]
libStatGen-1.0.14/general/StringHash.cpp:585:20: note: Technically the member function 'StringHash::StringList' can be const.
libStatGen-1.0.14/general/StringHash.h:159:12: note: Technically the member function 'StringHash::StringList' can be const.
libStatGen-1.0.14/general/StringHash.cpp:33:5: warning: Class 'StringHash' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/StringHash.cpp:250:5: warning: Class 'StringIntHash' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/StringHash.cpp:421:5: warning: Class 'StringDoubleHash' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/StringHash.cpp:112:36: style:inconclusive: Function 'Add' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:126:28: note: Function 'Add' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:112:36: note: Function 'Add' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:131:37: style:inconclusive: Function 'Find' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:127:29: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:131:37: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:154:37: style:inconclusive: Function 'Find' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:128:29: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:154:37: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:215:43: style:inconclusive: Function 'ReadLinesFromFile' argument 1 names different: declaration 'file' definition 'f'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:162:35: note: Function 'ReadLinesFromFile' argument 1 names different: declaration 'file' definition 'f'.
libStatGen-1.0.14/general/StringHash.cpp:215:43: note: Function 'ReadLinesFromFile' argument 1 names different: declaration 'file' definition 'f'.
libStatGen-1.0.14/general/StringHash.cpp:226:44: style:inconclusive: Function 'ReadLinesFromFile' argument 1 names different: declaration 'file' definition 'f'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:165:36: note: Function 'ReadLinesFromFile' argument 1 names different: declaration 'file' definition 'f'.
libStatGen-1.0.14/general/StringHash.cpp:226:44: note: Function 'ReadLinesFromFile' argument 1 names different: declaration 'file' definition 'f'.
libStatGen-1.0.14/general/StringHash.cpp:321:39: style:inconclusive: Function 'Add' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:257:28: note: Function 'Add' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:321:39: note: Function 'Add' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:321:51: style:inconclusive: Function 'Add' argument 2 names different: declaration 'integer' definition 'value'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:257:35: note: Function 'Add' argument 2 names different: declaration 'integer' definition 'value'.
libStatGen-1.0.14/general/StringHash.cpp:321:51: note: Function 'Add' argument 2 names different: declaration 'integer' definition 'value'.
libStatGen-1.0.14/general/StringHash.cpp:340:40: style:inconclusive: Function 'Find' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:258:29: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:340:40: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:360:40: style:inconclusive: Function 'Find' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:259:29: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:360:40: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:477:42: style:inconclusive: Function 'Add' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:364:28: note: Function 'Add' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:477:42: note: Function 'Add' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:496:43: style:inconclusive: Function 'Find' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:365:29: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:496:43: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:516:43: style:inconclusive: Function 'Find' argument 1 names different: declaration 's' definition 'string'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:366:29: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:516:43: note: Function 'Find' argument 1 names different: declaration 's' definition 'string'.
libStatGen-1.0.14/general/StringHash.cpp:578:31: style:inconclusive: Function 'Print' argument 1 names different: declaration 'file' definition 'output'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringHash.h:156:23: note: Function 'Print' argument 1 names different: declaration 'file' definition 'output'.
libStatGen-1.0.14/general/StringHash.cpp:578:31: note: Function 'Print' argument 1 names different: declaration 'file' definition 'output'.
libStatGen-1.0.14/general/StringMap.cpp:26:5: warning: Class 'StringMap' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/StringMap.cpp:310:5: warning: Class 'StringIntMap' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/StringMap.cpp:51:14: style: Variable 'size' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/StringMap.cpp:43:18: note: size is assigned
libStatGen-1.0.14/general/StringMap.cpp:51:14: note: size is overwritten
libStatGen-1.0.14/general/StringMap.cpp:70:37: style:inconclusive: Function 'Add' argument 1 names different: declaration 's' definition 'key'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringMap.h:66:30: note: Function 'Add' argument 1 names different: declaration 's' definition 'key'.
libStatGen-1.0.14/general/StringMap.cpp:70:37: note: Function 'Add' argument 1 names different: declaration 's' definition 'key'.
libStatGen-1.0.14/general/StringMap.cpp:352:40: style:inconclusive: Function 'Add' argument 1 names different: declaration 's' definition 'key'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringMap.h:131:30: note: Function 'Add' argument 1 names different: declaration 's' definition 'key'.
libStatGen-1.0.14/general/StringMap.cpp:352:40: note: Function 'Add' argument 1 names different: declaration 's' definition 'key'.
libStatGen-1.0.14/general/StringMap.cpp:352:49: style:inconclusive: Function 'Add' argument 2 names different: declaration 'i' definition 'integer'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/StringMap.h:131:37: note: Function 'Add' argument 2 names different: declaration 'i' definition 'integer'.
libStatGen-1.0.14/general/StringMap.cpp:352:49: note: Function 'Add' argument 2 names different: declaration 'i' definition 'integer'.
libStatGen-1.0.14/general/Tabix.cpp:21:8: warning: Member variable 'Tabix::myFormat' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/Tabix.h:46:10: style: The function 'resetIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/IndexBase.h:70:18: note: Virtual function in base class
libStatGen-1.0.14/general/Tabix.h:46:10: note: Function in derived class
libStatGen-1.0.14/general/Tabix.h:51:27: style: The function 'readIndex' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/general/IndexBase.h:75:35: note: Virtual function in base class
libStatGen-1.0.14/general/Tabix.h:51:27: note: Function in derived class
libStatGen-1.0.14/general/Tabix.cpp:184:30: style: C-style pointer casting [cstyleCast]
libStatGen-1.0.14/general/Tabix.cpp:255:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/general/UncompressedFileType.cpp:60:13: warning: Class 'UncompressedFileType' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
libStatGen-1.0.14/general/UncompressedFileType.cpp:60:13: warning: Class 'UncompressedFileType' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
libStatGen-1.0.14/general/glfHandler.cpp:26:13: warning: Member variable 'glfHandler::handle' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/glfHandler.cpp:26:13: warning: Member variable 'glfHandler::data' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/glfHandler.cpp:26:13: warning: Member variable 'glfHandler::likelihoods' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/glfHandler.cpp:26:13: warning: Member variable 'glfHandler::errorMsg' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/general/glfHandler.h:104:10: style:inconclusive: Technically the member function 'glfHandler::isOpen' can be const. [functionConst]
libStatGen-1.0.14/general/glfHandler.cpp:88:18: note: Technically the member function 'glfHandler::isOpen' can be const.
libStatGen-1.0.14/general/glfHandler.h:104:10: note: Technically the member function 'glfHandler::isOpen' can be const.
libStatGen-1.0.14/general/glfHandler.h:117:14: style:inconclusive: Technically the member function 'glfHandler::GetReference' can be const. [functionConst]
libStatGen-1.0.14/general/glfHandler.cpp:319:18: note: Technically the member function 'glfHandler::GetReference' can be const.
libStatGen-1.0.14/general/glfHandler.h:117:14: note: Technically the member function 'glfHandler::GetReference' can be const.
libStatGen-1.0.14/general/glfHandler.h:118:14: style:inconclusive: Technically the member function 'glfHandler::GetDepth' can be const. [functionConst]
libStatGen-1.0.14/general/glfHandler.cpp:327:17: note: Technically the member function 'glfHandler::GetDepth' can be const.
libStatGen-1.0.14/general/glfHandler.h:118:14: note: Technically the member function 'glfHandler::GetDepth' can be const.
libStatGen-1.0.14/general/glfHandler.h:119:20: style:inconclusive: Technically the member function 'glfHandler::GetLikelihoods' can be const. [functionConst]
libStatGen-1.0.14/general/glfHandler.cpp:303:28: note: Technically the member function 'glfHandler::GetLikelihoods' can be const.
libStatGen-1.0.14/general/glfHandler.h:119:20: note: Technically the member function 'glfHandler::GetLikelihoods' can be const.
libStatGen-1.0.14/general/glfHandler.h:120:29: style:inconclusive: Technically the member function 'glfHandler::GetLogLikelihoods' can be const. [functionConst]
libStatGen-1.0.14/general/glfHandler.cpp:311:35: note: Technically the member function 'glfHandler::GetLogLikelihoods' can be const.
libStatGen-1.0.14/general/glfHandler.h:120:29: note: Technically the member function 'glfHandler::GetLogLikelihoods' can be const.
libStatGen-1.0.14/general/glfHandler.h:121:14: style:inconclusive: Technically the member function 'glfHandler::GetMapQuality' can be const. [functionConst]
libStatGen-1.0.14/general/glfHandler.cpp:335:17: note: Technically the member function 'glfHandler::GetMapQuality' can be const.
libStatGen-1.0.14/general/glfHandler.h:121:14: note: Technically the member function 'glfHandler::GetMapQuality' can be const.
libStatGen-1.0.14/general/glfHandler.cpp:303:47: style:inconclusive: Function 'GetLikelihoods' argument 1 names different: declaration 'position' definition 'pos'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/glfHandler.h:119:39: note: Function 'GetLikelihoods' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:303:47: note: Function 'GetLikelihoods' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:311:57: style:inconclusive: Function 'GetLogLikelihoods' argument 1 names different: declaration 'position' definition 'pos'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/glfHandler.h:120:51: note: Function 'GetLogLikelihoods' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:311:57: note: Function 'GetLogLikelihoods' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:319:35: style:inconclusive: Function 'GetReference' argument 1 names different: declaration 'position' definition 'pos'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/glfHandler.h:117:31: note: Function 'GetReference' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:319:35: note: Function 'GetReference' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:327:30: style:inconclusive: Function 'GetDepth' argument 1 names different: declaration 'position' definition 'pos'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/glfHandler.h:118:27: note: Function 'GetDepth' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:327:30: note: Function 'GetDepth' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:335:35: style:inconclusive: Function 'GetMapQuality' argument 1 names different: declaration 'position' definition 'pos'. [funcArgNamesDifferent]
libStatGen-1.0.14/general/glfHandler.h:121:32: note: Function 'GetMapQuality' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:335:35: note: Function 'GetMapQuality' argument 1 names different: declaration 'position' definition 'pos'.
libStatGen-1.0.14/general/glfHandler.cpp:287:45: style: Parameter 'rhs' can be declared with const [constParameter]
libStatGen-1.0.14/general/test/GreedyTupleAligner_test.cpp:26:5: style: Class 'MockGenomeSequence' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/test/GreedyTupleAligner_test.cpp:26:36: performance: Function parameter 'sequence' should be passed by const reference. [passedByValue]
libStatGen-1.0.14/general/test/GreedyTupleAligner_test.cpp:55:105: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/test/GreedyTupleAligner_test.cpp:58:97: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/general/test/cigar/CigarRollerTest.h:23:9: performance:inconclusive: Technically the member function 'CigarRollerTest::test' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/test/cigar/CigarRollerTest.cpp:32:22: note: Technically the member function 'CigarRollerTest::test' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/cigar/CigarRollerTest.h:23:9: note: Technically the member function 'CigarRollerTest::test' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.h:21:1: style: The class 'IFILE_Test' does not have a constructor although it has private member variables. [noConstructor]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:282:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:257:29: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:282:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:448:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:420:29: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:448:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:525:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:505:30: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:525:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:585:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:565:30: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:585:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:662:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:640:30: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:662:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:746:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:716:29: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:746:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:795:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:765:29: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:795:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:903:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:883:29: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:903:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:967:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:947:30: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:967:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:1048:29: style: Variable 'totalBytesPreviouslyRead' is reassigned a value before the old one has been used. [redundantAssignment]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:1025:29: note: totalBytesPreviouslyRead is assigned
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:1048:29: note: totalBytesPreviouslyRead is overwritten
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:138:29: style: Variable 'totalBytesPreviouslyRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:381:29: style: Variable 'totalBytesPreviouslyRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/test/inputFileTest/InputFileTest.cpp:1048:29: style: Variable 'totalBytesPreviouslyRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/general/test/memoryMapArrayTest/MemoryMapArrayTest.h:30:9: style:inconclusive: Technically the member function 'UnitTest::getPassCount' can be const. [functionConst]
libStatGen-1.0.14/general/test/memoryMapArrayTest/MemoryMapArrayTest.h:31:9: style:inconclusive: Technically the member function 'UnitTest::getFailureCount' can be const. [functionConst]
libStatGen-1.0.14/general/test/memoryMapArrayTest/MemoryMapArrayTest.h:28:5: style: Class 'UnitTest' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/test/memoryMapArrayTest/MemoryMapArrayTest.cpp:32:5: style: Class 'MemoryMapArrayTest' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/test/nonOverlapRegions/NonOverlapRegionsTest.h:27:10: performance:inconclusive: Technically the member function 'NonOverlapRegionsTest::testChrom' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/test/nonOverlapRegions/NonOverlapRegionsTest.cpp:37:29: note: Technically the member function 'NonOverlapRegionsTest::testChrom' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/nonOverlapRegions/NonOverlapRegionsTest.h:27:10: note: Technically the member function 'NonOverlapRegionsTest::testChrom' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/nonOverlapRegions/NonOverlapRegionsTest.h:28:10: performance:inconclusive: Technically the member function 'NonOverlapRegionsTest::testPos' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/test/nonOverlapRegions/NonOverlapRegionsTest.cpp:102:29: note: Technically the member function 'NonOverlapRegionsTest::testPos' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/nonOverlapRegions/NonOverlapRegionsTest.h:28:10: note: Technically the member function 'NonOverlapRegionsTest::testPos' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/packedVectorTest/PackedVectorTest.cpp:30:5: style: Class 'PackedArrayTest' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/test/referenceSequenceTest/ReferenceSequenceTest.cpp:31:5: style: Class 'ReferenceSequenceTest' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:49:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:50:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:53:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:54:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:70:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:71:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:74:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:75:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:89:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:94:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:99:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:100:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:125:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:126:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:128:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:129:12: warning: Assert statement calls a function which may have desired side effects: 'testInvalidGetIndex'. [assertWithSideEffect]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.h:30:10: performance:inconclusive: Technically the member function 'ReusableVectorTest::testInvalidGetIndex' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.cpp:167:26: note: Technically the member function 'ReusableVectorTest::testInvalidGetIndex' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.h:30:10: note: Technically the member function 'ReusableVectorTest::testInvalidGetIndex' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/general/test/reusableVector/ReusableVectorTest.h:40:10: performance:inconclusive: Technically the member function 'ReusableVectorTestDataType::clear' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/GlfException.h:37:5: style: Class 'GlfException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/glf/GlfException.h:47:5: style: Class 'GlfException' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/glf/GlfException.cpp:27:47: style:inconclusive: Function 'GlfException' argument 1 names different: declaration 'what_arg' definition 'errorMsg'. [funcArgNamesDifferent]
libStatGen-1.0.14/glf/GlfException.h:37:37: note: Function 'GlfException' argument 1 names different: declaration 'what_arg' definition 'errorMsg'.
libStatGen-1.0.14/glf/GlfException.cpp:27:47: note: Function 'GlfException' argument 1 names different: declaration 'what_arg' definition 'errorMsg'.
libStatGen-1.0.14/glf/GlfFile.h:117:14: style:inconclusive: Technically the member function 'GlfFile::getCurrentRecordCount' can be const. [functionConst]
libStatGen-1.0.14/glf/GlfFile.cpp:483:19: note: Technically the member function 'GlfFile::getCurrentRecordCount' can be const.
libStatGen-1.0.14/glf/GlfFile.h:117:14: note: Technically the member function 'GlfFile::getCurrentRecordCount' can be const.
libStatGen-1.0.14/glf/GlfFile.h:128:30: style:inconclusive: Technically the member function 'GlfFile::getStatus' can be const. [functionConst]
libStatGen-1.0.14/glf/GlfFile.h:135:24: style:inconclusive: Technically the member function 'GlfFile::getStatusMessage' can be const. [functionConst]
libStatGen-1.0.14/glf/GlfFile.h:45:5: style: Class 'GlfFile' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/glf/GlfFile.h:182:4: style: Class 'GlfFileReader' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/glf/GlfFile.h:196:5: style: Class 'GlfFileWriter' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
libStatGen-1.0.14/glf/GlfFile.cpp:80:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:130:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:173:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:182:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:195:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:210:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:219:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:234:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:248:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:258:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:283:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:303:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:316:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:325:8: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:337:13: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:347:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:362:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:376:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:385:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:395:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:424:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:439:8: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:448:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:457:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:478:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfFile.cpp:200:38: style: Parameter 'header' can be declared with const [constParameter]
libStatGen-1.0.14/glf/GlfHeader.cpp:25:12: warning: Member variable 'GlfHeader::myTextLen' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/glf/GlfHeader.cpp:39:12: warning: Member variable 'GlfHeader::myTextLen' is not initialized in the constructor. [uninitMemberVar]
libStatGen-1.0.14/glf/GlfHeader.cpp:47:24: warning: Member variable 'GlfHeader::myTextLen' is not assigned a value in 'GlfHeader::operator='. [operatorEqVarError]
libStatGen-1.0.14/glf/GlfHeader.cpp:88:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfHeader.cpp:104:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfHeader.cpp:119:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfHeader.cpp:133:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfHeader.cpp:149:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfHeader.cpp:164:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfHeader.cpp:180:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfHeader.cpp:194:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.h:191:13: style:inconclusive: Technically the member function 'GlfRecord::getLk' can be const. [functionConst]
libStatGen-1.0.14/glf/GlfRecord.cpp:355:20: note: Technically the member function 'GlfRecord::getLk' can be const.
libStatGen-1.0.14/glf/GlfRecord.h:191:13: note: Technically the member function 'GlfRecord::getLk' can be const.
libStatGen-1.0.14/glf/GlfRecord.h:242:13: style:inconclusive: Technically the member function 'GlfRecord::getLkHom1' can be const. [functionConst]
libStatGen-1.0.14/glf/GlfRecord.cpp:420:20: note: Technically the member function 'GlfRecord::getLkHom1' can be const.
libStatGen-1.0.14/glf/GlfRecord.h:242:13: note: Technically the member function 'GlfRecord::getLkHom1' can be const.
libStatGen-1.0.14/glf/GlfRecord.h:246:13: style:inconclusive: Technically the member function 'GlfRecord::getLkHom2' can be const. [functionConst]
libStatGen-1.0.14/glf/GlfRecord.cpp:431:20: note: Technically the member function 'GlfRecord::getLkHom2' can be const.
libStatGen-1.0.14/glf/GlfRecord.h:246:13: note: Technically the member function 'GlfRecord::getLkHom2' can be const.
libStatGen-1.0.14/glf/GlfRecord.h:250:13: style:inconclusive: Technically the member function 'GlfRecord::getLkHet' can be const. [functionConst]
libStatGen-1.0.14/glf/GlfRecord.cpp:442:20: note: Technically the member function 'GlfRecord::getLkHet' can be const.
libStatGen-1.0.14/glf/GlfRecord.h:250:13: note: Technically the member function 'GlfRecord::getLkHet' can be const.
libStatGen-1.0.14/glf/GlfRecord.cpp:80:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:103:13: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:135:13: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:275:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:290:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:305:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:320:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:335:5: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:347:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:361:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:367:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:426:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:437:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:448:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:459:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRecord.cpp:471:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRefSection.cpp:104:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRefSection.cpp:118:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRefSection.cpp:133:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRefSection.cpp:157:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRefSection.cpp:170:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/GlfRefSection.cpp:185:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/glf/test/ReadFiles.cpp:45:5: style: Exception should be caught by reference. [catchExceptionByValue]
libStatGen-1.0.14/glf/test/WriteFiles.h:33:10: performance:inconclusive: Technically the member function 'TestWrite::writeHeader' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:270:17: note: Technically the member function 'TestWrite::writeHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:33:10: note: Technically the member function 'TestWrite::writeHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:34:10: performance:inconclusive: Technically the member function 'TestWrite::writeRefSection1' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:297:17: note: Technically the member function 'TestWrite::writeRefSection1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:34:10: note: Technically the member function 'TestWrite::writeRefSection1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:35:10: performance:inconclusive: Technically the member function 'TestWrite::writeSec1Record1' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:328:17: note: Technically the member function 'TestWrite::writeSec1Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:35:10: note: Technically the member function 'TestWrite::writeSec1Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:36:10: performance:inconclusive: Technically the member function 'TestWrite::writeSec1Record2' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:349:17: note: Technically the member function 'TestWrite::writeSec1Record2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:36:10: note: Technically the member function 'TestWrite::writeSec1Record2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:37:10: performance:inconclusive: Technically the member function 'TestWrite::writeEndMarker' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:386:17: note: Technically the member function 'TestWrite::writeEndMarker' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:37:10: note: Technically the member function 'TestWrite::writeEndMarker' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:38:10: performance:inconclusive: Technically the member function 'TestWrite::writeRefSection2' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:399:17: note: Technically the member function 'TestWrite::writeRefSection2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:38:10: note: Technically the member function 'TestWrite::writeRefSection2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:39:10: performance:inconclusive: Technically the member function 'TestWrite::writeSec2Record1' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:430:17: note: Technically the member function 'TestWrite::writeSec2Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:39:10: note: Technically the member function 'TestWrite::writeSec2Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:41:10: performance:inconclusive: Technically the member function 'TestWrite::readHeader' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:451:17: note: Technically the member function 'TestWrite::readHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:41:10: note: Technically the member function 'TestWrite::readHeader' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:42:10: performance:inconclusive: Technically the member function 'TestWrite::readRefSection1' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:474:17: note: Technically the member function 'TestWrite::readRefSection1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:42:10: note: Technically the member function 'TestWrite::readRefSection1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:43:10: performance:inconclusive: Technically the member function 'TestWrite::readSec1Record1' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:485:17: note: Technically the member function 'TestWrite::readSec1Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:43:10: note: Technically the member function 'TestWrite::readSec1Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:44:10: performance:inconclusive: Technically the member function 'TestWrite::readSec1Record2' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:498:17: note: Technically the member function 'TestWrite::readSec1Record2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:44:10: note: Technically the member function 'TestWrite::readSec1Record2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:45:10: performance:inconclusive: Technically the member function 'TestWrite::readEndMarker' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:519:17: note: Technically the member function 'TestWrite::readEndMarker' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:45:10: note: Technically the member function 'TestWrite::readEndMarker' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:46:10: performance:inconclusive: Technically the member function 'TestWrite::readRefSection2' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:529:17: note: Technically the member function 'TestWrite::readRefSection2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:46:10: note: Technically the member function 'TestWrite::readRefSection2' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:47:10: performance:inconclusive: Technically the member function 'TestWrite::readSec2Record1' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:541:17: note: Technically the member function 'TestWrite::readSec2Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:47:10: note: Technically the member function 'TestWrite::readSec2Record1' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:49:10: performance:inconclusive: Technically the member function 'TestWrite::checkEOF' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/glf/test/WriteFiles.cpp:554:17: note: Technically the member function 'TestWrite::checkEOF' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/glf/test/WriteFiles.h:49:10: note: Technically the member function 'TestWrite::checkEOF' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/samtools/knetfile.c:468:10: style: Local variable 'l' shadows outer variable [shadowVariable]
libStatGen-1.0.14/samtools/knetfile.c:441:11: note: Shadowed declaration
libStatGen-1.0.14/samtools/knetfile.c:468:10: note: Shadow variable
libStatGen-1.0.14/vcf/VcfFile.cpp:24:3: performance: Variable 'myFilePtr' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
libStatGen-1.0.14/vcf/VcfFile.h:54:9: style:inconclusive: Technically the member function 'VcfFile::getNumRecords' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:48:16: style:inconclusive: Technically the member function 'VcfGenotypeFormat::getGTIndex' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:55:9: style:inconclusive: Technically the member function 'VcfGenotypeFormat::getOrigNumFields' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfGenotypeSample.h:58:17: style:inconclusive: Technically the member function 'VcfGenotypeSample::isPhased' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfGenotypeSample.h:59:17: style:inconclusive: Technically the member function 'VcfGenotypeSample::isUnphased' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfGenotypeSample.h:60:17: style:inconclusive: Technically the member function 'VcfGenotypeSample::hasAllGenotypeAlleles' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecordDiscardRules.h:50:9: style:inconclusive: Technically the member function 'VcfRecordDiscardRules::getNumDiscarded' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:74:17: style:inconclusive: Technically the member function 'VcfRecord::getChromStr' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:75:9: style:inconclusive: Technically the member function 'VcfRecord::get1BasedPosition' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:76:17: style:inconclusive: Technically the member function 'VcfRecord::getIDStr' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:77:17: style:inconclusive: Technically the member function 'VcfRecord::getRefStr' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:78:9: style:inconclusive: Technically the member function 'VcfRecord::getNumRefBases' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:79:17: style:inconclusive: Technically the member function 'VcfRecord::getAltStr' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:99:11: style:inconclusive: Technically the member function 'VcfRecord::getQual' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:100:17: style:inconclusive: Technically the member function 'VcfRecord::getQualStr' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.h:113:16: style:inconclusive: Technically the member function 'VcfRecord::getNumSamples' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfFileReader.h:98:18: style:inconclusive: Technically the member function 'VcfFileReader::getVcfIndex' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfFileReader.cpp:208:29: note: Technically the member function 'VcfFileReader::getVcfIndex' can be const.
libStatGen-1.0.14/vcf/VcfFileReader.h:98:18: note: Technically the member function 'VcfFileReader::getVcfIndex' can be const.
libStatGen-1.0.14/vcf/VcfFileReader.h:137:9: style:inconclusive: Technically the member function 'VcfFileReader::getNumKeptRecords' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfFileReader.h:141:9: style:inconclusive: Technically the member function 'VcfFileReader::getTotalReadRecords' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfFileReader.h:209:18: style: Virtual function 'resetFile' is called from destructor '~VcfFileReader()' at line 47. Dynamic binding is not used. [virtualCallInConstructor]
libStatGen-1.0.14/vcf/VcfFileReader.cpp:47:5: note: Calling resetFile
libStatGen-1.0.14/vcf/VcfFileReader.h:209:18: note: resetFile is a virtual function
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:28:22: warning: The class 'VcfGenotypeFormat' defines member variable with name 'GENOTYPE_INDEX_NA' also defined in its parent class 'VcfGenotypeField'. [duplInheritedMember]
libStatGen-1.0.14/vcf/VcfGenotypeField.h:28:22: note: Parent variable 'VcfGenotypeField::GENOTYPE_INDEX_NA'
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:28:22: note: Derived variable 'VcfGenotypeFormat::GENOTYPE_INDEX_NA'
libStatGen-1.0.14/vcf/VcfRecordInfo.h:42:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfRecordField.h:40:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfRecordInfo.h:42:10: note: Function in derived class
libStatGen-1.0.14/vcf/VcfRecordInfo.h:49:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfRecordField.h:46:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfRecordInfo.h:49:10: note: Function in derived class
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:59:18: style: The function 'internal_reset' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfGenotypeField.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:59:18: note: Function in derived class
libStatGen-1.0.14/vcf/VcfGenotypeSample.h:77:18: style: The function 'internal_reset' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfGenotypeField.h:61:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfGenotypeSample.h:77:18: note: Function in derived class
libStatGen-1.0.14/vcf/VcfRecordGenotype.h:56:10: style: The function 'read' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfRecordField.h:40:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfRecordGenotype.h:56:10: note: Function in derived class
libStatGen-1.0.14/vcf/VcfRecordGenotype.h:70:10: style: The function 'write' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfRecordField.h:46:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfRecordGenotype.h:70:10: note: Function in derived class
libStatGen-1.0.14/vcf/VcfFileReader.h:56:18: style: The function 'open' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfFile.h:40:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfFileReader.h:56:18: note: Function in derived class
libStatGen-1.0.14/vcf/VcfFileReader.h:209:18: style: The function 'resetFile' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfFile.h:72:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfFileReader.h:209:18: note: Function in derived class
libStatGen-1.0.14/vcf/VcfFileReader.cpp:200:13: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/vcf/VcfFileReader.cpp:515:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/vcf/VcfFileReader.cpp:523:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/vcf/VcfFileReader.cpp:105:46: style:inconclusive: Function 'readVcfIndex' argument 1 names different: declaration 'filename' definition 'vcfIndexFilename'. [funcArgNamesDifferent]
libStatGen-1.0.14/vcf/VcfFileReader.h:83:36: note: Function 'readVcfIndex' argument 1 names different: declaration 'filename' definition 'vcfIndexFilename'.
libStatGen-1.0.14/vcf/VcfFileReader.cpp:105:46: note: Function 'readVcfIndex' argument 1 names different: declaration 'filename' definition 'vcfIndexFilename'.
libStatGen-1.0.14/vcf/VcfFileWriter.h:49:18: style: The function 'open' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfFile.h:40:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfFileWriter.h:49:18: note: Function in derived class
libStatGen-1.0.14/vcf/VcfFileWriter.h:57:18: style: The function 'resetFile' overrides a function in a base class but is not marked with a 'override' specifier. [missingOverride]
libStatGen-1.0.14/vcf/VcfFile.h:72:18: note: Virtual function in base class
libStatGen-1.0.14/vcf/VcfFileWriter.h:57:18: note: Function in derived class
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:51:10: style:inconclusive: Technically the member function 'VcfGenotypeFormat::storeIndex' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfGenotypeFormat.cpp:87:25: note: Technically the member function 'VcfGenotypeFormat::storeIndex' can be const.
libStatGen-1.0.14/vcf/VcfGenotypeFormat.h:51:10: note: Technically the member function 'VcfGenotypeFormat::storeIndex' can be const.
libStatGen-1.0.14/vcf/VcfHeader.h:54:26: style:inconclusive: Technically the member function 'VcfHeader::getStatus' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfHeader.cpp:133:33: note: Technically the member function 'VcfHeader::getStatus' can be const.
libStatGen-1.0.14/vcf/VcfHeader.h:54:26: note: Technically the member function 'VcfHeader::getStatus' can be const.
libStatGen-1.0.14/vcf/VcfHeader.h:57:9: style:inconclusive: Technically the member function 'VcfHeader::getNumMetaLines' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfHeader.cpp:139:16: note: Technically the member function 'VcfHeader::getNumMetaLines' can be const.
libStatGen-1.0.14/vcf/VcfHeader.h:57:9: note: Technically the member function 'VcfHeader::getNumMetaLines' can be const.
libStatGen-1.0.14/vcf/VcfHeader.cpp:109:38: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/vcf/VcfRecord.h:66:26: style:inconclusive: Technically the member function 'VcfRecord::getStatus' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfRecord.cpp:292:33: note: Technically the member function 'VcfRecord::getStatus' can be const.
libStatGen-1.0.14/vcf/VcfRecord.h:66:26: note: Technically the member function 'VcfRecord::getStatus' can be const.
libStatGen-1.0.14/vcf/VcfRecord.h:187:10: performance:inconclusive: Technically the member function 'VcfRecord::readTilTab' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/vcf/VcfRecord.cpp:419:17: note: Technically the member function 'VcfRecord::readTilTab' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/vcf/VcfRecord.h:187:10: note: Technically the member function 'VcfRecord::readTilTab' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/vcf/VcfRecord.cpp:309:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/vcf/VcfRecord.cpp:382:9: style: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
libStatGen-1.0.14/vcf/VcfRecord.cpp:421:9: style: The scope of the variable 'charRead' can be reduced. [variableScope]
libStatGen-1.0.14/vcf/VcfRecord.cpp:403:24: style: Checking if unsigned expression 'gt' is less than zero. [unsignedLessThanZero]
libStatGen-1.0.14/vcf/VcfRecord.cpp:421:18: style: Variable 'charRead' is assigned a value that is never used. [unreadVariable]
libStatGen-1.0.14/vcf/VcfRecord.cpp:358:74: performance: Prefer prefix ++/-- operators for non-primitive types. [postfixOperator]
libStatGen-1.0.14/vcf/VcfRecordDiscardRules.h:86:10: performance:inconclusive: Technically the member function 'VcfRecordDiscardRules::setIDs' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/vcf/VcfRecordDiscardRules.cpp:68:29: note: Technically the member function 'VcfRecordDiscardRules::setIDs' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/vcf/VcfRecordDiscardRules.h:86:10: note: Technically the member function 'VcfRecordDiscardRules::setIDs' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/vcf/VcfRecordFilter.cpp:61:22: style: The scope of the variable 'nextFilter' can be reduced. [variableScope]
libStatGen-1.0.14/vcf/VcfSubsetSamples.h:76:10: style:inconclusive: Technically the member function 'VcfSubsetSamples::keep' can be const. [functionConst]
libStatGen-1.0.14/vcf/VcfSubsetSamples.cpp:172:24: note: Technically the member function 'VcfSubsetSamples::keep' can be const.
libStatGen-1.0.14/vcf/VcfSubsetSamples.h:76:10: note: Technically the member function 'VcfSubsetSamples::keep' can be const.
libStatGen-1.0.14/vcf/VcfSubsetSamples.h:84:10: performance:inconclusive: Technically the member function 'VcfSubsetSamples::readSamplesFromFile' can be static (but you may consider moving to unnamed namespace). [functionStatic]
libStatGen-1.0.14/vcf/VcfSubsetSamples.cpp:183:24: note: Technically the member function 'VcfSubsetSamples::readSamplesFromFile' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/vcf/VcfSubsetSamples.h:84:10: note: Technically the member function 'VcfSubsetSamples::readSamplesFromFile' can be static (but you may consider moving to unnamed namespace).
libStatGen-1.0.14/vcf/VcfSubsetSamples.cpp:97:41: style:inconclusive: Function 'init' argument 2 names different: declaration 'sampleFileName' definition 'includeFileName'. [funcArgNamesDifferent]
libStatGen-1.0.14/vcf/VcfSubsetSamples.h:65:46: note: Function 'init' argument 2 names different: declaration 'sampleFileName' definition 'includeFileName'.
libStatGen-1.0.14/vcf/VcfSubsetSamples.cpp:97:41: note: Function 'init' argument 2 names different: declaration 'sampleFileName' definition 'includeFileName'.
libStatGen-1.0.14/general/Pedigree.cpp:385:13: warning: Null pointer dereference: output [ctunullpointer]
libStatGen-1.0.14/general/Pedigree.cpp:445:11: note: Assuming that condition 'f==NULL' is not redundant
libStatGen-1.0.14/general/Pedigree.cpp:446:22: note: Calling function WritePedigreeFile, 1st argument is null
libStatGen-1.0.14/general/Pedigree.cpp:358:9: note: Calling function WriteRecodedPerson, 1st argument is null
libStatGen-1.0.14/general/Pedigree.cpp:385:13: note: Dereferencing argument output that is null
diff:
2.5 libStatGen-1.0.14/bam/CigarHelper.cpp:145:36: style: Condition 'clipWritten==false' is always true [knownConditionTrueFalse]
     libStatGen-1.0.14/bam/CigarHelper.cpp:61:12: note: Assuming that condition 'clipWritten' is not redundant
     libStatGen-1.0.14/bam/CigarHelper.cpp:145:36: note: Condition 'clipWritten==false' is always true
head libStatGen-1.0.14/general/CSG_MD5.h:348:11: style: Parameter 'input' can be declared with const [constParameter]
head libStatGen-1.0.14/general/CSG_MD5.h:381:9: style: Parameter 'input' can be declared with const [constParameter]
head libStatGen-1.0.14/general/IntArray.cpp:205:29: style: Parameter 'a' can be declared with const [constParameter]
head libStatGen-1.0.14/general/IntArray.cpp:205:38: style: Parameter 'b' can be declared with const [constParameter]
head libStatGen-1.0.14/general/Parameters.cpp:730:55: style: Parameter 'argv' can be declared with const [constParameter]
2.5 libStatGen-1.0.14/general/Pedigree.cpp:347:13: warning: Either the condition 'f==NULL' is redundant or there is possible null pointer dereference: output. [nullPointerRedundantCheck]
     libStatGen-1.0.14/general/Pedigree.cpp:437:11: note: Assuming that condition 'f==NULL' is not redundant
     libStatGen-1.0.14/general/Pedigree.cpp:438:19: note: Calling function 'WriteDataFile', 1st argument 'f' value is 0
     libStatGen-1.0.14/general/Pedigree.cpp:347:13: note: Null pointer dereference
2.5 libStatGen-1.0.14/general/Pedigree.cpp:359:13: warning: Either the condition 'f==NULL' is redundant or there is possible null pointer dereference: output. [nullPointerRedundantCheck]
     libStatGen-1.0.14/general/Pedigree.cpp:445:11: note: Assuming that condition 'f==NULL' is not redundant
     libStatGen-1.0.14/general/Pedigree.cpp:446:23: note: Calling function 'WritePedigreeFile', 1st argument 'f' value is 0
     libStatGen-1.0.14/general/Pedigree.cpp:359:13: note: Null pointer dereference
head libStatGen-1.0.14/general/PedigreeTrim.cpp:29:39: style: Parameter 'informative' can be declared with const [constParameter]
head libStatGen-1.0.14/general/Random.cpp:160:26: style: Variable 'mag01' can be declared with const [constVariable]
head libStatGen-1.0.14/general/Random.cpp:207:26: style: Variable 'mag01' can be declared with const [constVariable]
head libStatGen-1.0.14/general/Random.cpp:341:42: style: Parameter 'weights' can be declared with const [constParameter]
head libStatGen-1.0.14/vcf/VcfFileReader.h:209:18: style: Virtual function 'resetFile' is called from destructor '~VcfFileReader()' at line 47. Dynamic binding is not used. [virtualCallInConstructor]
     libStatGen-1.0.14/vcf/VcfFileReader.cpp:47:5: note: Calling resetFile
     libStatGen-1.0.14/vcf/VcfFileReader.h:209:18: note: resetFile is a virtual function


DONE