2025-05-04 23:58
ftp://ftp.de.debian.org/debian/pool/main/h/hmmer/hmmer_3.4+dfsg.orig.tar.xz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j1
platform: Linux-6.8.0-59-generic-x86_64-with-glibc2.39
python: 3.12.3
client-version: 1.3.67
compiler: g++ (Ubuntu 14.2.0-4ubuntu2~24.04) 14.2.0
cppcheck: head 2.17.0
head-info: 88ef81e (2025-05-02 08:42:38 +0200)
count: 2812 2685
elapsed-time: 76.7 75.7
head-timing-info:

old-timing-info:

head results:
hmmer-3.4/easel/easel.c:84:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable LOG_ERR [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/easel.c:154:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/easel.c:313:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/easel.c:584:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EASEL_COPYRIGHT [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/easel.c:714:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/easel.c:582:35: warning: Either the condition 'appname' is redundant or there is possible null pointer dereference: appname. [nullPointerRedundantCheck]
hmmer-3.4/easel/easel.c:588:7: note: Assuming that condition 'appname' is not redundant
hmmer-3.4/easel/easel.c:582:35: note: Null pointer dereference
hmmer-3.4/easel/easel.c:641:37: warning: Either the condition 'appname' is redundant or there is possible null pointer dereference: appname. [nullPointerRedundantCheck]
hmmer-3.4/easel/easel.c:643:7: note: Assuming that condition 'appname' is not redundant
hmmer-3.4/easel/easel.c:641:37: note: Null pointer dereference
hmmer-3.4/easel/easel.c:825:7: style: Checking if unsigned expression 'sizeof(char)*128' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/easel.c:970:3: style: Checking if unsigned expression 'sizeof(char)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/easel.c:1369:3: style: Checking if unsigned expression 'sizeof(char)*(n1+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/easel.c:1789:3: style: Checking if unsigned expression 'sizeof(char)*(strlen(path)+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/easel.c:1882:3: style: Checking if unsigned expression 'sizeof(char)*(nd+nf+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/easel.c:1944:14: style: Checking if unsigned expression 'sizeof(char)*(nf+strlen(sfx)+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/easel.c:2017:3: style: Checking if unsigned expression 'sizeof(char)*np' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/easel.h:434:63: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/easel.h:435:63: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/easel.h:436:63: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/easel.h:437:63: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/easel.c:1999:60: style:inconclusive: Function 'esl_FileEnvOpen' argument 3 names different: declaration 'ret_fp' definition 'opt_fp'. [funcArgNamesDifferent]
hmmer-3.4/easel/easel.h:524:15: note: Function 'esl_FileEnvOpen' argument 3 names different: declaration 'ret_fp' definition 'opt_fp'.
hmmer-3.4/easel/easel.c:1999:60: note: Function 'esl_FileEnvOpen' argument 3 names different: declaration 'ret_fp' definition 'opt_fp'.
hmmer-3.4/easel/easel.c:1999:75: style:inconclusive: Function 'esl_FileEnvOpen' argument 4 names different: declaration 'ret_path' definition 'opt_path'. [funcArgNamesDifferent]
hmmer-3.4/easel/easel.h:524:30: note: Function 'esl_FileEnvOpen' argument 4 names different: declaration 'ret_path' definition 'opt_path'.
hmmer-3.4/easel/easel.c:1999:75: note: Function 'esl_FileEnvOpen' argument 4 names different: declaration 'ret_path' definition 'opt_path'.
hmmer-3.4/easel/easel.c:265:56: style: Parameter 'sourcefile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:265:90: style: Parameter 'format' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:575:50: style: Parameter 'banner' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:634:49: style: Parameter 'usage' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:1272:32: style: Parameter 'delim' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:1785:9: style: Variable 'lastslash' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/easel.c:1934:9: style: Variable 'lastdot' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/easel.c:2003:9: style: Variable 's' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/easel.c:2107:19: style: Parameter 'basename6X' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:2109:9: style: Variable 'tmpdir' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/easel.c:2239:9: style: Variable 'cwd' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/easel.c:2363:20: style: Parameter 's1' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:2363:30: style: Parameter 's2' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/easel.c:2240:18: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/easel.c:2239:9: style: Variable 'cwd' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/easel.c:2240:9: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/easel.c:891:45: error: va_list 'argp' was opened but not closed by va_end(). [va_end_missing]
hmmer-3.4/easel/easel.c:931:40: error: va_list 'argp' was opened but not closed by va_end(). [va_end_missing]
hmmer-3.4/easel/esl_alloc.c:62:3: error: Memory leak: pp [memleak]
hmmer-3.4/easel/esl_alphabet.c:1777:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_alphabet.c:112:3: style: Checking if unsigned expression 'sizeof(struct ESL_ALPHABET)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:120:3: style: Checking if unsigned expression 'sizeof(char)*(Kp+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:121:3: style: Checking if unsigned expression 'sizeof(int)*Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:122:3: style: Checking if unsigned expression 'sizeof(char*)*Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:127:3: style: Checking if unsigned expression 'sizeof(char)*(Kp*K)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:365:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*a->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:642:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*(L+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:832:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*(L+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:933:5: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*(n+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_alphabet.c:1017:37: style:inconclusive: Function 'esl_abc_dsqrlen' argument 1 names different: declaration 'a' definition 'abc'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_alphabet.h:62:52: note: Function 'esl_abc_dsqrlen' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1017:37: note: Function 'esl_abc_dsqrlen' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1323:35: style:inconclusive: Function 'esl_abc_Match' argument 1 names different: declaration 'a' definition 'abc'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_alphabet.h:72:56: note: Function 'esl_abc_Match' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1323:35: note: Function 'esl_abc_Match' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1621:36: style:inconclusive: Function 'esl_abc_FCount' argument 1 names different: declaration 'a' definition 'abc'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_alphabet.h:86:56: note: Function 'esl_abc_FCount' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1621:36: note: Function 'esl_abc_FCount' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1637:36: style:inconclusive: Function 'esl_abc_DCount' argument 1 names different: declaration 'a' definition 'abc'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_alphabet.h:87:56: note: Function 'esl_abc_DCount' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1637:36: note: Function 'esl_abc_DCount' argument 1 names different: declaration 'a' definition 'abc'.
hmmer-3.4/easel/esl_alphabet.c:1664:26: style:inconclusive: Function 'esl_abc_EncodeType' argument 1 names different: declaration 'typestring' definition 'type'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_alphabet.h:88:43: note: Function 'esl_abc_EncodeType' argument 1 names different: declaration 'typestring' definition 'type'.
hmmer-3.4/easel/esl_alphabet.c:1664:26: note: Function 'esl_abc_EncodeType' argument 1 names different: declaration 'typestring' definition 'type'.
hmmer-3.4/easel/esl_alphabet.c:410:12: style: Variable 'sp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_alphabet.c:485:59: style: Parameter 'ds' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_alphabet.c:487:11: style: Variable 'sp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_alphabet.c:551:35: style: Parameter 'a' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_alphabet.c:1254:12: style: Variable 'aaonly' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_alphabet.c:1255:12: style: Variable 'allcanon' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_alphabet.c:1256:12: style: Variable 'aacanon' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_alphabet.c:1323:70: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_alphabet.c:1664:26: style: Parameter 'type' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_alphabet.c:1684:29: style: Parameter 'type' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_bitfield.c:36:3: style: Checking if unsigned expression 'sizeof(struct ESL_BITFIELD)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_bitfield.c:39:3: style: Checking if unsigned expression 'sizeof(uint64_t)*nu' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:132:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdin [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_buffer.c:223:21: style: The comparison 'filesize != -1' is always false. [knownConditionTrueFalse]
hmmer-3.4/easel/esl_buffer.c:200:27: note: 'filesize' is assigned value '-1' here.
hmmer-3.4/easel/esl_buffer.c:223:21: note: The comparison 'filesize != -1' is always false.
hmmer-3.4/easel/esl_buffer.c:348:3: style: Checking if unsigned expression 'sizeof(char)*bf->pagesize' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:482:3: style: Checking if unsigned expression 'sizeof(char)*bf->pagesize' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1079:5: style: Checking if unsigned expression 'sizeof(char)*nc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1145:3: style: Checking if unsigned expression 'sizeof(char)*(nc+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1342:3: style: Checking if unsigned expression 'sizeof(char)*nc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1425:3: style: Checking if unsigned expression 'sizeof(char)*(nc+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1530:3: style: Checking if unsigned expression 'sizeof(struct ESL_BUFFER)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1603:7: style: Checking if unsigned expression 'sizeof(char)*filesize' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1632:3: style: Checking if unsigned expression 'sizeof(char)*bf->pagesize' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_buffer.c:1239:61: style:inconclusive: Function 'esl_buffer_GetToken' argument 3 names different: declaration 'opt_p' definition 'opt_tok'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_buffer.h:68:79: note: Function 'esl_buffer_GetToken' argument 3 names different: declaration 'opt_p' definition 'opt_tok'.
hmmer-3.4/easel/esl_buffer.c:1239:61: note: Function 'esl_buffer_GetToken' argument 3 names different: declaration 'opt_p' definition 'opt_tok'.
hmmer-3.4/easel/esl_buffer.c:1319:63: style:inconclusive: Function 'esl_buffer_FetchToken' argument 3 names different: declaration 'opt_p' definition 'opt_tok'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_buffer.h:69:79: note: Function 'esl_buffer_FetchToken' argument 3 names different: declaration 'opt_p' definition 'opt_tok'.
hmmer-3.4/easel/esl_buffer.c:1319:63: note: Function 'esl_buffer_FetchToken' argument 3 names different: declaration 'opt_p' definition 'opt_tok'.
hmmer-3.4/easel/esl_buffer.c:1402:68: style:inconclusive: Function 'esl_buffer_FetchTokenAsStr' argument 3 names different: declaration 'opt_p' definition 'opt_tok'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_buffer.h:70:79: note: Function 'esl_buffer_FetchTokenAsStr' argument 3 names different: declaration 'opt_p' definition 'opt_tok'.
hmmer-3.4/easel/esl_buffer.c:1402:68: note: Function 'esl_buffer_FetchTokenAsStr' argument 3 names different: declaration 'opt_p' definition 'opt_tok'.
hmmer-3.4/easel/esl_buffer.c:561:34: style: Parameter 'bf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_buffer.c:866:28: style: Parameter 'bf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_buffer.c:933:38: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dirichlet.c:47:30: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dirichlet.c:47:41: style: Parameter 'alpha' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dirichlet.c:87:32: style: Parameter 'c' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dirichlet.c:87:43: style: Parameter 'alpha' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dirichlet.c:135:50: style: Parameter 'alpha' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dirichlet.c:151:49: style: Parameter 'alpha' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_distance.c:234:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HUGE_VAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_distance.c:418:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HUGE_VAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_distance.c:1333:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable HUGE_VAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_distance.c:819:67: style:inconclusive: Function 'esl_dst_CAverageId' argument 4 names different: declaration 'ret_avgid' definition 'opt_avgid'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_distance.h:44:81: note: Function 'esl_dst_CAverageId' argument 4 names different: declaration 'ret_avgid' definition 'opt_avgid'.
hmmer-3.4/easel/esl_distance.c:819:67: note: Function 'esl_dst_CAverageId' argument 4 names different: declaration 'ret_avgid' definition 'opt_avgid'.
hmmer-3.4/easel/esl_distance.c:895:70: style:inconclusive: Function 'esl_dst_CAverageMatch' argument 4 names different: declaration 'ret_avgpm' definition 'opt_avgpm'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_distance.h:45:81: note: Function 'esl_dst_CAverageMatch' argument 4 names different: declaration 'ret_avgpm' definition 'opt_avgpm'.
hmmer-3.4/easel/esl_distance.c:895:70: note: Function 'esl_dst_CAverageMatch' argument 4 names different: declaration 'ret_avgpm' definition 'opt_avgpm'.
hmmer-3.4/easel/esl_distance.c:969:95: style:inconclusive: Function 'esl_dst_XAverageId' argument 5 names different: declaration 'ret_avgid' definition 'opt_avgid'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_distance.h:47:112: note: Function 'esl_dst_XAverageId' argument 5 names different: declaration 'ret_avgid' definition 'opt_avgid'.
hmmer-3.4/easel/esl_distance.c:969:95: note: Function 'esl_dst_XAverageId' argument 5 names different: declaration 'ret_avgid' definition 'opt_avgid'.
hmmer-3.4/easel/esl_distance.c:1044:98: style:inconclusive: Function 'esl_dst_XAverageMatch' argument 5 names different: declaration 'ret_avgpm' definition 'opt_avgpm'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_distance.h:48:112: note: Function 'esl_dst_XAverageMatch' argument 5 names different: declaration 'ret_avgpm' definition 'opt_avgpm'.
hmmer-3.4/easel/esl_distance.c:1044:98: note: Function 'esl_dst_XAverageMatch' argument 5 names different: declaration 'ret_avgpm' definition 'opt_avgpm'.
hmmer-3.4/easel/esl_distance.c:1232:83: style: Parameter 'V' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dmatrix.c:71:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:128:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslUPPER [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:182:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslUPPER [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:809:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:869:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:942:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:979:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslUPPER [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:1055:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:1094:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:1155:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:1202:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dmatrix.c:59:3: style: Checking if unsigned expression 'sizeof(struct ESL_DMATRIX)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:64:3: style: Checking if unsigned expression 'sizeof(double*)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:67:3: style: Checking if unsigned expression 'sizeof(double)*n*m' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:107:3: style: Checking if unsigned expression 'sizeof(struct ESL_DMATRIX)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:113:3: style: Checking if unsigned expression 'sizeof(double*)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:117:3: style: Checking if unsigned expression 'sizeof(double)*n*(n+1)/2' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:587:3: style: Checking if unsigned expression 'sizeof(struct ESL_PERMUTATION)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:590:3: style: Checking if unsigned expression 'sizeof(int)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:1225:3: style: Checking if unsigned expression 'sizeof(double)*A->n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:1226:3: style: Checking if unsigned expression 'sizeof(double)*A->n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dmatrix.c:534:34: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_dmatrix.c:219:38: style:inconclusive: Function 'esl_dmatrix_Clone' argument 1 names different: declaration 'old' definition 'A'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_dmatrix.h:32:64: note: Function 'esl_dmatrix_Clone' argument 1 names different: declaration 'old' definition 'A'.
hmmer-3.4/easel/esl_dmatrix.c:219:38: note: Function 'esl_dmatrix_Clone' argument 1 names different: declaration 'old' definition 'A'.
hmmer-3.4/easel/esl_dmatrix.c:463:48: style: Parameter 'D' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dmatrix.c:501:10: style: Variable 'cyan' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_dmatrix.c:502:10: style: Variable 'magenta' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_dmatrix.c:503:10: style: Variable 'yellow' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_dmatrix.c:504:10: style: Variable 'black' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_dsqdata.c:711:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIu32 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_dsqdata.c:220:13: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
hmmer-3.4/easel/esl_dsqdata.c:222:13: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
hmmer-3.4/easel/esl_dsqdata.c:224:13: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
hmmer-3.4/easel/esl_dsqdata.c:228:13: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
hmmer-3.4/easel/esl_dsqdata.c:905:20: warning: Either the condition 'dd->recycling==NULL' is redundant or there is possible null pointer dereference: chu. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_dsqdata.c:901:25: note: Assuming that condition 'dd->recycling==NULL' is not redundant
hmmer-3.4/easel/esl_dsqdata.c:904:18: note: chu is assigned 'dd->recycling' here.
hmmer-3.4/easel/esl_dsqdata.c:905:20: note: Null pointer dereference
hmmer-3.4/easel/esl_dsqdata.c:172:3: style: Checking if unsigned expression 'sizeof(struct ESL_DSQDATA)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:752:3: style: Checking if unsigned expression 'sizeof(struct ESL_DSQDATA_CHUNK)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:771:3: style: Checking if unsigned expression 'dd->chunk_maxseq*sizeof(ESL_DSQ*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:772:3: style: Checking if unsigned expression 'dd->chunk_maxseq*sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:773:3: style: Checking if unsigned expression 'dd->chunk_maxseq*sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:774:3: style: Checking if unsigned expression 'dd->chunk_maxseq*sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:775:3: style: Checking if unsigned expression 'dd->chunk_maxseq*sizeof(int)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:776:3: style: Checking if unsigned expression 'dd->chunk_maxseq*sizeof(int64_t)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:805:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*U' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:816:3: style: Checking if unsigned expression 'sizeof(char)*chu->mdalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:875:3: style: Checking if unsigned expression 'sizeof(struct ESL_DSQDATA_RECORD)*dd->chunk_maxseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_dsqdata.c:1297:33: style:inconclusive: Function 'dsqdata_pack5' argument 2 names different: declaration 'L' definition 'n'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_dsqdata.c:59:48: note: Function 'dsqdata_pack5' argument 2 names different: declaration 'L' definition 'n'.
hmmer-3.4/easel/esl_dsqdata.c:1297:33: note: Function 'dsqdata_pack5' argument 2 names different: declaration 'L' definition 'n'.
hmmer-3.4/easel/esl_dsqdata.c:1337:33: style:inconclusive: Function 'dsqdata_pack2' argument 2 names different: declaration 'L' definition 'n'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_dsqdata.c:60:48: note: Function 'dsqdata_pack2' argument 2 names different: declaration 'L' definition 'n'.
hmmer-3.4/easel/esl_dsqdata.c:1337:33: note: Function 'dsqdata_pack2' argument 2 names different: declaration 'L' definition 'n'.
hmmer-3.4/easel/esl_dsqdata.c:156:48: style: Parameter 'basename' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dsqdata.c:1198:27: style: Parameter 'psq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dsqdata.c:1235:27: style: Parameter 'psq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dsqdata.c:1297:24: style: Parameter 'dsq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dsqdata.c:1337:24: style: Parameter 'dsq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_dsqdata.c:1205:12: error: Shifting signed 32-bit value by 31 bits is undefined behaviour [shiftTooManyBitsSigned]
hmmer-3.4/easel/esl_dsqdata.c:1242:12: error: Shifting signed 32-bit value by 31 bits is undefined behaviour [shiftTooManyBitsSigned]
hmmer-3.4/easel/esl_dsqdata.c:1310:23: error: Shifting signed 32-bit value by 31 bits is undefined behaviour [shiftTooManyBitsSigned]
hmmer-3.4/easel/esl_dsqdata.c:1366:23: error: Shifting signed 32-bit value by 31 bits is undefined behaviour [shiftTooManyBitsSigned]
hmmer-3.4/easel/esl_exponential.c:420:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable COMPLETE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_exponential.c:441:32: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_exponential.c:431:14: note: Assignment 'sb=0.', assigned value is 0.0
hmmer-3.4/easel/esl_exponential.c:432:23: note: Assuming condition is false
hmmer-3.4/easel/esl_exponential.c:441:32: note: Invalid argument
hmmer-3.4/easel/esl_exponential.c:441:42: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_exponential.c:431:0: note: Assignment 'sa=0.', assigned value is 0.0
hmmer-3.4/easel/esl_exponential.c:432:23: note: Assuming condition is false
hmmer-3.4/easel/esl_exponential.c:441:42: note: Invalid argument
hmmer-3.4/easel/esl_exponential.c:70:23: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_exponential.c:75:28: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_exponential.c:110:23: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_exponential.c:115:38: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_exponential.c:413:42: style:inconclusive: Function 'esl_exp_FitCompleteBinned' argument 1 names different: declaration 'h' definition 'g'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_exponential.h:37:53: note: Function 'esl_exp_FitCompleteBinned' argument 1 names different: declaration 'h' definition 'g'.
hmmer-3.4/easel/esl_exponential.c:413:42: note: Function 'esl_exp_FitCompleteBinned' argument 1 names different: declaration 'h' definition 'g'.
hmmer-3.4/easel/esl_exponential.c:194:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_exponential.c:205:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_exponential.c:216:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_exponential.c:227:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_exponential.c:311:29: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_exponential.c:356:34: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_fileparser.c:66:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdin [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_fileparser.c:494:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdin [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_fileparser.c:105:3: style: Checking if unsigned expression 'sizeof(struct ESL_FILEPARSER)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_fileparser.c:338:58: style: Parameter 'prefix' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_fileparser.c:70:20: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_gamma.c:603:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable COMPLETE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_gamma.c:613:7: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/esl_gamma.c:76:23: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:118:24: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:351:19: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:352:19: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:431:18: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:432:18: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:472:18: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:473:18: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:532:18: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:533:18: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gamma.c:591:42: style:inconclusive: Function 'esl_gam_FitCompleteBinned' argument 1 names different: declaration 'h' definition 'g'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_gamma.h:33:53: note: Function 'esl_gam_FitCompleteBinned' argument 1 names different: declaration 'h' definition 'g'.
hmmer-3.4/easel/esl_gamma.c:591:42: note: Function 'esl_gam_FitCompleteBinned' argument 1 names different: declaration 'h' definition 'g'.
hmmer-3.4/easel/esl_gamma.c:220:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gamma.c:234:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gamma.c:248:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gamma.c:262:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gamma.c:333:30: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gamma.c:502:35: style: Parameter 'ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gencode.c:783:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_gencode.c:812:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_gencode.c:431:7: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/esl_gencode.c:222:3: style: Checking if unsigned expression 'sizeof(struct ESL_GENCODE)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_gencode.c:760:3: style: Checking if unsigned expression 'sizeof(struct ESL_GENCODE_WORKSTATE)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_gencode.c:412:59: style:inconclusive: Function 'esl_gencode_Read' argument 2 names different: declaration 'nucleic_abc' definition 'nt_abc'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_gencode.h:67:79: note: Function 'esl_gencode_Read' argument 2 names different: declaration 'nucleic_abc' definition 'nt_abc'.
hmmer-3.4/easel/esl_gencode.c:412:59: note: Function 'esl_gencode_Read' argument 2 names different: declaration 'nucleic_abc' definition 'nt_abc'.
hmmer-3.4/easel/esl_gencode.c:412:87: style:inconclusive: Function 'esl_gencode_Read' argument 3 names different: declaration 'amino_abc' definition 'aa_abc'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_gencode.h:67:112: note: Function 'esl_gencode_Read' argument 3 names different: declaration 'amino_abc' definition 'aa_abc'.
hmmer-3.4/easel/esl_gencode.c:412:87: note: Function 'esl_gencode_Read' argument 3 names different: declaration 'amino_abc' definition 'aa_abc'.
hmmer-3.4/easel/esl_gencode.c:547:8: style: Variable 'order' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_gencode.c:625:63: style: Parameter 'dsqp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gencode.c:688:60: style: Parameter 'dsqp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gencode.c:754:42: style: Parameter 'go' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gencode.c:754:59: style: Parameter 'gcode' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gencode.c:844:39: style: Parameter 'gcode' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:208:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_getopts.c:388:9: error: Common realloc mistake: 'ret_string' nulled but not freed upon failure [memleakOnRealloc]
hmmer-3.4/easel/esl_getopts.c:68:3: style: Checking if unsigned expression 'sizeof(struct ESL_GETOPTS)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_getopts.c:109:3: style: Checking if unsigned expression 'sizeof(char*)*g->nopts' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_getopts.c:110:3: style: Checking if unsigned expression 'sizeof(int)*g->nopts' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_getopts.c:111:3: style: Checking if unsigned expression 'sizeof(int)*g->nopts' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_getopts.c:828:3: style: Checking if unsigned expression 'sizeof(char)*(ntot+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_getopts.c:1310:34: style: Checking if unsigned expression 'sizeof(char)*(arglen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_getopts.c:313:42: style: Parameter 'g' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:364:41: style: Parameter 'g' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:1353:48: style: Parameter 'optname' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:1377:32: style: Parameter 'g' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:1377:41: style: Parameter 'optname' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:1753:28: style: Parameter 'arg' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:1791:25: style: Parameter 'arg' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:1837:25: style: Parameter 'arg' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_getopts.c:1946:30: style: Parameter 'g' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gev.c:178:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DBL_EPSILON [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_gev.c:207:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DBL_EPSILON [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_gev.c:579:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DBL_MAX [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_gev.c:239:16: style: Expression 'exp(x) - 1' can be replaced by 'expm1(x)' to avoid loss of precision. [unpreciseMathCall]
hmmer-3.4/easel/esl_gev.c:102:25: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gev.c:154:25: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gev.c:217:26: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_gev.c:256:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gev.c:267:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gev.c:278:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gev.c:289:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gev.c:369:18: style: Parameter 'p' can be declared as pointer to const. However it seems that 'gev_func' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_gev.c:534:11: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_gev.c:369:18: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_gev.c:372:20: style: Variable 'data' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gev.c:399:22: style: Parameter 'p' can be declared as pointer to const. However it seems that 'gev_gradient' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_gev.c:534:22: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_gev.c:399:22: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_gev.c:403:11: style: Variable 'x' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_graph.c:75:3: style: Checking if unsigned expression 'sizeof(int)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_graph.c:76:3: style: Checking if unsigned expression 'sizeof(int)*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_graph.c:77:3: style: Checking if unsigned expression 'sizeof(int)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_graph.c:78:3: style: Checking if unsigned expression 'sizeof(int)*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_gumbel.c:221:31: style:inconclusive: Function 'esl_gumbel_generic_pdf' argument 1 names different: declaration 'x' definition 'p'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_gumbel.h:23:49: note: Function 'esl_gumbel_generic_pdf' argument 1 names different: declaration 'x' definition 'p'.
hmmer-3.4/easel/esl_gumbel.c:221:31: note: Function 'esl_gumbel_generic_pdf' argument 1 names different: declaration 'x' definition 'p'.
hmmer-3.4/easel/esl_gumbel.c:243:32: style:inconclusive: Function 'esl_gumbel_generic_surv' argument 1 names different: declaration 'x' definition 'p'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_gumbel.h:25:49: note: Function 'esl_gumbel_generic_surv' argument 1 names different: declaration 'x' definition 'p'.
hmmer-3.4/easel/esl_gumbel.c:243:32: note: Function 'esl_gumbel_generic_surv' argument 1 names different: declaration 'x' definition 'p'.
hmmer-3.4/easel/esl_gumbel.c:223:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gumbel.c:234:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gumbel.c:245:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gumbel.c:256:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gumbel.c:339:20: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gumbel.c:517:35: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gumbel.c:594:20: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gumbel.c:776:35: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_gumbel.c:823:19: style: Parameter 'p' can be declared as pointer to const. However it seems that 'tevd_func' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_gumbel.c:1006:11: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_gumbel.c:823:19: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_gumbel.c:827:11: style: Variable 'x' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_gumbel.c:863:19: style: Parameter 'p' can be declared as pointer to const. However it seems that 'tevd_grad' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_gumbel.c:1006:23: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_gumbel.c:863:19: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_gumbel.c:867:11: style: Variable 'x' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_heap.c:49:3: style: Checking if unsigned expression 'sizeof(struct ESL_HEAP)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_heap.c:54:3: style: Checking if unsigned expression 'sizeof(int)*128' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_heap.c:178:41: style:inconclusive: Function 'esl_heap_IExtractTop' argument 2 names different: declaration 'ret_val' definition 'opt_val'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_heap.h:33:58: note: Function 'esl_heap_IExtractTop' argument 2 names different: declaration 'ret_val' definition 'opt_val'.
hmmer-3.4/easel/esl_heap.c:178:41: note: Function 'esl_heap_IExtractTop' argument 2 names different: declaration 'ret_val' definition 'opt_val'.
hmmer-3.4/easel/esl_heap.c:68:29: style: Parameter 'hp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_histogram.c:85:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable DBL_MAX [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_histogram.c:377:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE_CENSORED [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_histogram.c:454:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VIRTUAL_CENSORED [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_histogram.c:504:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable VIRTUAL_CENSORED [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_histogram.c:1169:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE_CENSORED [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_histogram.c:83:3: style: Checking if unsigned expression 'sizeof(struct ESL_HISTOGRAM)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:117:3: style: Checking if unsigned expression 'sizeof(uint64_t)*h->nb' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:145:3: style: Checking if unsigned expression 'sizeof(double)*h->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:764:5: style: Checking if unsigned expression 'sizeof(double)*h->nb' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:821:27: style: Checking if unsigned expression 'sizeof(double)*h->nb' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:1307:3: style: Checking if unsigned expression 'sizeof(uint64_t)*(nb*2+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:1308:3: style: Checking if unsigned expression 'sizeof(double)*(nb*2+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:1309:3: style: Checking if unsigned expression 'sizeof(double)*(nb*2+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_histogram.c:187:40: style: Parameter 'h' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_histogram.c:1042:45: style: Parameter 'h' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_hmm.c:376:20: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_hmm.c:368:10: note: Assignment 'max=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_hmm.c:369:17: note: Assuming condition is false
hmmer-3.4/easel/esl_hmm.c:376:20: note: Invalid argument
hmmer-3.4/easel/esl_hmm.c:394:24: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_hmm.c:380:14: note: Assignment 'max=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_hmm.c:381:21: note: Assuming condition is false
hmmer-3.4/easel/esl_hmm.c:394:24: note: Invalid argument
hmmer-3.4/easel/esl_hmm.c:401:29: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_hmm.c:398:19: note: Assignment 'fwd->sc[L+1]=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_hmm.c:399:17: note: Assuming condition is false
hmmer-3.4/easel/esl_hmm.c:401:29: note: Invalid argument
hmmer-3.4/easel/esl_hmm.c:438:20: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_hmm.c:430:10: note: Assignment 'max=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_hmm.c:431:17: note: Assuming condition is false
hmmer-3.4/easel/esl_hmm.c:438:20: note: Invalid argument
hmmer-3.4/easel/esl_hmm.c:454:24: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_hmm.c:442:14: note: Assignment 'max=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_hmm.c:443:21: note: Assuming condition is false
hmmer-3.4/easel/esl_hmm.c:454:24: note: Invalid argument
hmmer-3.4/easel/esl_hmm.c:460:27: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_hmm.c:457:17: note: Assignment 'bck->sc[0]=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_hmm.c:458:17: note: Assuming condition is false
hmmer-3.4/easel/esl_hmm.c:460:27: note: Invalid argument
hmmer-3.4/easel/esl_hmm.c:35:3: style: Checking if unsigned expression 'sizeof(struct ESL_HMM)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:41:3: style: Checking if unsigned expression 'sizeof(float*)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:42:3: style: Checking if unsigned expression 'sizeof(float*)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:43:3: style: Checking if unsigned expression 'sizeof(float*)*abc->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:44:3: style: Checking if unsigned expression 'sizeof(float)*(M+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:46:3: style: Checking if unsigned expression 'sizeof(float)*M*(M+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:47:3: style: Checking if unsigned expression 'sizeof(float)*M*abc->K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:48:3: style: Checking if unsigned expression 'sizeof(float)*abc->Kp*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:193:3: style: Checking if unsigned expression 'sizeof(struct ESL_HMX)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:198:3: style: Checking if unsigned expression 'sizeof(float)*(allocL+1)*allocM' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:201:3: style: Checking if unsigned expression 'sizeof(float*)*(allocL+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:202:3: style: Checking if unsigned expression 'sizeof(float)*(allocL+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:314:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*256' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:315:3: style: Checking if unsigned expression 'sizeof(int)*256' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hmm.c:199:14: style: int result is assigned to long variable. If the variable is long to avoid loss of information, then you have loss of information. [truncLongCastAssignment]
hmmer-3.4/easel/esl_hmm.c:233:10: style: int result is assigned to long variable. If the variable is long to avoid loss of information, then you have loss of information. [truncLongCastAssignment]
hmmer-3.4/easel/esl_huffman.c:100:3: style: Checking if unsigned expression 'sizeof(struct ESL_HUFFMAN)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:113:3: style: Checking if unsigned expression 'sizeof(int)*hc->K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:114:3: style: Checking if unsigned expression 'sizeof(uint32_t)*hc->K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:115:3: style: Checking if unsigned expression 'sizeof(int)*hc->K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:128:3: style: Checking if unsigned expression 'sizeof(struct hufftree_s)*((1>(hc->Ku-1))?(1):(hc->Ku-1))' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:134:3: style: Checking if unsigned expression 'sizeof(int)*hc->D' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:135:3: style: Checking if unsigned expression 'sizeof(uint32_t)*hc->D' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:136:3: style: Checking if unsigned expression 'sizeof(int)*hc->D' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:214:3: style: Checking if unsigned expression 'sizeof(uint32_t)*xalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:290:3: style: Checking if unsigned expression 'sizeof(char)*allocT' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_huffman.c:376:10: style: Variable 'fq' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_huffman.c:611:17: error: Shifting signed 32-bit value by 31 bits is undefined behaviour [shiftTooManyBitsSigned]
hmmer-3.4/easel/esl_huffman.c:355:44: note: Calling function 'dump_uint32', 3rd argument '32' value is 32
hmmer-3.4/easel/esl_huffman.c:611:17: note: Shift
hmmer-3.4/easel/esl_hyperexp.c:68:3: style: Checking if unsigned expression 'sizeof(struct ESL_HYPEREXP)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hyperexp.c:74:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hyperexp.c:75:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hyperexp.c:76:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hyperexp.c:77:3: style: Checking if unsigned expression 'sizeof(char)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hyperexp.c:863:3: style: Checking if unsigned expression 'sizeof(double)*np' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hyperexp.c:1075:3: style: Checking if unsigned expression 'sizeof(double)*np' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_hyperexp.c:283:26: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_hyperexp.c:287:20: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_hyperexp.c:323:26: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_hyperexp.c:327:20: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_hyperexp.c:368:20: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_hyperexp.c:461:31: style:inconclusive: Function 'esl_hxp_generic_invcdf' argument 1 names different: declaration 'x' definition 'p'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_hyperexp.h:45:46: note: Function 'esl_hxp_generic_invcdf' argument 1 names different: declaration 'x' definition 'p'.
hmmer-3.4/easel/esl_hyperexp.c:461:31: note: Function 'esl_hxp_generic_invcdf' argument 1 names different: declaration 'x' definition 'p'.
hmmer-3.4/easel/esl_hyperexp.c:560:35: style:inconclusive: Function 'esl_hyperexp_Read' argument 1 names different: declaration 'ef' definition 'e'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_hyperexp.h:30:56: note: Function 'esl_hyperexp_Read' argument 1 names different: declaration 'ef' definition 'e'.
hmmer-3.4/easel/esl_hyperexp.c:560:35: note: Function 'esl_hyperexp_Read' argument 1 names different: declaration 'ef' definition 'e'.
hmmer-3.4/easel/esl_hyperexp.c:203:44: style: Parameter 'hxp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_hyperexp.c:229:43: style: Parameter 'hxp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_hyperexp.c:515:49: style: Parameter 'h' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_hyperexp.c:628:29: style: Parameter 'filename' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_hyperexp.c:679:60: style: Parameter 'h' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_hyperexp.c:704:37: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_hyperexp.c:807:26: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:304:15: style: Parameter 'dec_o' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:304:27: style: Parameter 'label_o' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:453:85: style: Parameter 'elig' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:528:104: style: Parameter 'label_o' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:528:133: style: Parameter 'to_add' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:562:21: style: Parameter 'dec_o' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:1119:23: style: Parameter 'assignment' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:1167:28: style: Parameter 'assignments' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_iset.c:1210:26: style: Parameter 'assignments' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_json.c:404:3: style: Checking if unsigned expression 'sizeof(struct ESL_JSON)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_json.c:407:3: style: Checking if unsigned expression 'sizeof(struct ESL_JSON_TOK)*32' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_json.c:506:3: style: Checking if unsigned expression 'sizeof(struct ESL_JSON_PARSER)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_json.c:860:3: style: Checking if unsigned expression 'sizeof(char)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_json.c:1119:46: style:inconclusive: Function 'add_dirty_unicode' argument 2 names different: declaration 'b' definition 's'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_json.c:35:58: note: Function 'add_dirty_unicode' argument 2 names different: declaration 'b' definition 's'.
hmmer-3.4/easel/esl_json.c:1119:46: note: Function 'add_dirty_unicode' argument 2 names different: declaration 'b' definition 's'.
hmmer-3.4/easel/esl_json.c:437:27: style: Parameter 'pi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_json.c:449:30: style: Parameter 'pi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_json.c:589:13: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_json.c:642:61: style: Parameter 'bf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_json.c:645:13: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_json.c:788:35: style: Parameter 'pi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_json.c:594:19: style: Variable 'digit' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_json.c:1032:12: style: Variable 'nalloc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_keyhash.c:225:3: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
hmmer-3.4/easel/esl_keyhash.c:390:3: style: Checking if unsigned expression 'sizeof(struct ESL_KEYHASH)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_keyhash.c:400:3: style: Checking if unsigned expression 'sizeof(int)*kh->hashsize' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_keyhash.c:403:3: style: Checking if unsigned expression 'sizeof(int)*kh->kalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_keyhash.c:404:3: style: Checking if unsigned expression 'sizeof(int)*kh->kalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_keyhash.c:407:3: style: Checking if unsigned expression 'sizeof(char)*kh->salloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_keyhash.c:267:71: style:inconclusive: Function 'esl_keyhash_Store' argument 4 names different: declaration 'ret_index' definition 'opt_index'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_keyhash.h:58:90: note: Function 'esl_keyhash_Store' argument 4 names different: declaration 'ret_index' definition 'opt_index'.
hmmer-3.4/easel/esl_keyhash.c:267:71: note: Function 'esl_keyhash_Store' argument 4 names different: declaration 'ret_index' definition 'opt_index'.
hmmer-3.4/easel/esl_keyhash.c:333:78: style:inconclusive: Function 'esl_keyhash_Lookup' argument 4 names different: declaration 'ret_index' definition 'opt_index'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_keyhash.h:59:90: note: Function 'esl_keyhash_Lookup' argument 4 names different: declaration 'ret_index' definition 'opt_index'.
hmmer-3.4/easel/esl_keyhash.c:333:78: note: Function 'esl_keyhash_Lookup' argument 4 names different: declaration 'ret_index' definition 'opt_index'.
hmmer-3.4/easel/esl_lognormal.c:37:24: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_lognormal.c:157:17: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_lognormal.c:158:17: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_lognormal.c:67:35: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_lognormal.c:123:41: style: Parameter 'c' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_matrixops.c:39:3: style: Checking if unsigned expression 'sizeof(double*)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_matrixops.c:42:3: style: Checking if unsigned expression 'sizeof(double)*M*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_matrixops.c:61:3: style: Checking if unsigned expression 'sizeof(float*)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_matrixops.c:64:3: style: Checking if unsigned expression 'sizeof(float)*M*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_matrixops.c:83:3: style: Checking if unsigned expression 'sizeof(int*)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_matrixops.c:86:3: style: Checking if unsigned expression 'sizeof(int)*M*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_matrixops.c:106:3: style: Checking if unsigned expression 'sizeof(char*)*M' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_matrixops.c:109:3: style: Checking if unsigned expression 'sizeof(char)*M*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mem.c:713:3: style: Checking if unsigned expression 'sizeof(char)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mem.c:772:7: style: Checking if unsigned expression 'sizeof(char)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mem.c:813:7: style: Checking if unsigned expression 'sizeof(char)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mem.c:484:28: style:inconclusive: Function 'esl_memnewline' argument 1 names different: declaration 'p' definition 'm'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_mem.h:12:45: note: Function 'esl_memnewline' argument 1 names different: declaration 'p' definition 'm'.
hmmer-3.4/easel/esl_mem.c:484:28: note: Function 'esl_memnewline' argument 1 names different: declaration 'p' definition 'm'.
hmmer-3.4/easel/esl_mem.c:112:24: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mem.c:174:24: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mem.c:234:22: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mem.c:350:22: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mem.c:486:9: style: Variable 'ptr' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_mem.c:551:18: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mem.c:566:19: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_minimizer.c:122:3: style: Checking if unsigned expression 'sizeof(double)*4*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:271:3: style: Checking if unsigned expression 'sizeof(struct ESL_MIN_CFG)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:273:3: style: Checking if unsigned expression 'sizeof(double)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:324:3: style: Checking if unsigned expression 'sizeof(struct ESL_MIN_DAT)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:333:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:334:3: style: Checking if unsigned expression 'sizeof(int)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:335:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:336:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:337:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:338:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:339:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:340:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:341:3: style: Checking if unsigned expression 'sizeof(int)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:342:3: style: Checking if unsigned expression 'sizeof(double)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:343:3: style: Checking if unsigned expression 'sizeof(int)*(max_iterations+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_minimizer.c:106:25: style:inconclusive: Function 'esl_min_ConjugateGradientDescent' argument 7 names different: declaration 'ret_fx' definition 'opt_fx'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_minimizer.h:63:29: note: Function 'esl_min_ConjugateGradientDescent' argument 7 names different: declaration 'ret_fx' definition 'opt_fx'.
hmmer-3.4/easel/esl_minimizer.c:106:25: note: Function 'esl_min_ConjugateGradientDescent' argument 7 names different: declaration 'ret_fx' definition 'opt_fx'.
hmmer-3.4/easel/esl_minimizer.c:111:11: style: Variable 'u' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_minimizer.c:392:41: style: Parameter 'dat' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_minimizer.c:430:11: style: Variable 'u' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_minimizer.c:520:48: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_minimizer.c:695:33: style: Parameter 'ori' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_minimizer.c:695:46: style: Parameter 'dir' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mixdchlet.c:386:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_mixdchlet.c:56:3: style: Checking if unsigned expression 'sizeof(struct ESL_MIXDCHLET)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixdchlet.c:61:3: style: Checking if unsigned expression 'sizeof(double)*Q' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixdchlet.c:62:3: style: Checking if unsigned expression 'sizeof(double)*Q' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixdchlet.c:366:3: style: Checking if unsigned expression 'sizeof(double)*nparam' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixdchlet.c:107:44: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_mixdchlet.c:132:44: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_mixdchlet.c:398:28: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_mixdchlet.c:216:43: style: Parameter 'dchl' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mixdchlet.c:238:38: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mixgev.c:69:3: style: Checking if unsigned expression 'sizeof(struct ESL_MIXGEV)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:74:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:75:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:76:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:77:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:78:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:79:3: style: Checking if unsigned expression 'sizeof(int)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:644:3: style: Checking if unsigned expression 'sizeof(double)*np' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_mixgev.c:211:21: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_mixgev.c:247:21: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_mixgev.c:134:29: warning: Function 'esl_mixgev_Copy' argument order different: declaration 'dest, src' definition 'src, dest' [funcArgOrderDifferent]
hmmer-3.4/easel/esl_mixgev.h:25:48: note: Function 'esl_mixgev_Copy' argument order different: declaration 'dest, src' definition 'src, dest'
hmmer-3.4/easel/esl_mixgev.c:134:29: note: Function 'esl_mixgev_Copy' argument order different: declaration 'dest, src' definition 'src, dest'
hmmer-3.4/easel/esl_mixgev.c:434:50: style: Parameter 'mg' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mixgev.c:497:35: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_mixgev.c:584:48: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:775:6: warning: Either the condition 'x>26' is redundant or the array 'ct[26]' is accessed at index 26, which is out of bounds. [arrayIndexOutOfBoundsCond]
hmmer-3.4/easel/esl_msa.c:774:19: note: Assuming that condition 'x>26' is not redundant
hmmer-3.4/easel/esl_msa.c:775:6: note: Array index out of bounds
hmmer-3.4/easel/esl_msa.c:98:3: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:105:2: style: Checking if unsigned expression 'sizeof(char)*(alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:295:5: style: Checking if unsigned expression 'sizeof(char*)*new_msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:300:5: style: Checking if unsigned expression 'sizeof(char*)*new_msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:305:5: style: Checking if unsigned expression 'sizeof(char*)*new_msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:310:5: style: Checking if unsigned expression 'sizeof(char*)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:315:5: style: Checking if unsigned expression 'sizeof(char*)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:326:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ncomment' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:334:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngf' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:335:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngf' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:345:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngs' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:346:5: style: Checking if unsigned expression 'sizeof(char**)*msa->ngs' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:349:7: style: Checking if unsigned expression 'sizeof(char*)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:357:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:358:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:367:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:368:5: style: Checking if unsigned expression 'sizeof(char**)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:371:7: style: Checking if unsigned expression 'sizeof(char*)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:590:3: style: Checking if unsigned expression 'sizeof(struct ESL_MSA)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:659:5: style: Checking if unsigned expression 'sizeof(char*)*nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:660:5: style: Checking if unsigned expression 'sizeof(double)*nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:661:5: style: Checking if unsigned expression 'sizeof(int64_t)*nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:820:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:827:2: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*(alen+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:894:3: style: Checking if unsigned expression 'msa->sqalloc*sizeof(ESL_DSQ*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:897:7: style: Checking if unsigned expression '(msa->alen+2)*sizeof(ESL_DSQ)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:949:3: style: Checking if unsigned expression 'msa->sqalloc*sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:952:7: style: Checking if unsigned expression '(msa->alen+1)*sizeof(char)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1196:5: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1248:5: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1471:5: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1512:5: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1551:5: style: Checking if unsigned expression 'sizeof(char*)*16' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1650:7: style: Checking if unsigned expression 'sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1651:7: style: Checking if unsigned expression 'sizeof(char**)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1652:7: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1671:4: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1744:7: style: Checking if unsigned expression 'sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1745:7: style: Checking if unsigned expression 'sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1810:7: style: Checking if unsigned expression 'sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1811:7: style: Checking if unsigned expression 'sizeof(char**)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1812:7: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1828:4: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1905:7: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1932:7: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:1959:7: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:2045:5: style: Checking if unsigned expression 'msa->abc->K*sizeof(float)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:2493:7: style: Checking if unsigned expression 'sizeof(int)*(msa->alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:2570:3: style: Checking if unsigned expression 'sizeof(int)*(msa->alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:2639:7: style: Checking if unsigned expression 'sizeof(int)*(msa->alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:2702:3: style: Checking if unsigned expression 'sizeof(int)*(msa->alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:2876:3: style: Checking if unsigned expression 'sizeof(int)*(len+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:3357:3: style: Checking if unsigned expression 'sizeof(char)*(maxn+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:3368:3: style: Checking if unsigned expression 'sizeof(char)*(alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msa.c:875:63: style:inconclusive: Function 'esl_msa_Digitize' argument 3 names different: declaration 'errmsg' definition 'errbuf'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_msa.h:145:79: note: Function 'esl_msa_Digitize' argument 3 names different: declaration 'errmsg' definition 'errbuf'.
hmmer-3.4/easel/esl_msa.c:875:63: note: Function 'esl_msa_Digitize' argument 3 names different: declaration 'errmsg' definition 'errbuf'.
hmmer-3.4/easel/esl_msa.c:1541:40: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1585:35: style: Parameter 'tag' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1585:64: style: Parameter 'value' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1633:35: style: Parameter 'tag' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1633:75: style: Parameter 'value' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1727:38: style: Parameter 'tag' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1727:49: style: Parameter 'value' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1796:38: style: Parameter 'tag' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:1796:60: style: Parameter 'value' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:2762:11: style: Variable 'sptr' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_msa.c:3223:35: style: Parameter 'a1' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msa.c:3223:48: style: Parameter 'a2' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msacluster.c:123:3: style: Checking if unsigned expression 'sizeof(int)*msa->nseq*2' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msacluster.c:128:5: style: Checking if unsigned expression 'sizeof(int)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msacluster.c:157:9: style: Checking if unsigned expression 'sizeof(int)*nc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msacluster.c:198:10: style: Variable 'as1' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_msacluster.c:199:10: style: Variable 'as2' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_msacluster.c:218:12: style: Variable 'ax1' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_msacluster.c:219:12: style: Variable 'ax2' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_msacluster.c:220:23: style: Variable 'param' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_msafile.c:285:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile.c:1048:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile.c:368:3: style: Checking if unsigned expression 'sizeof(struct ESL_MSAFILE)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile.c:543:84: style:inconclusive: Function 'esl_msafile_GuessFileFormat' argument 3 names different: declaration 'fmtd' definition 'opt_fmtd'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_msafile.h:107:97: note: Function 'esl_msafile_GuessFileFormat' argument 3 names different: declaration 'fmtd' definition 'opt_fmtd'.
hmmer-3.4/easel/esl_msafile.c:543:84: note: Function 'esl_msafile_GuessFileFormat' argument 3 names different: declaration 'fmtd' definition 'opt_fmtd'.
hmmer-3.4/easel/esl_msafile.c:488:47: style: Parameter 'src' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile.c:718:32: style: Parameter 'fmtstring' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile.c:1100:38: style: Parameter 'msa' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:193:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdin [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile2.c:518:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile2.c:176:3: style: Checking if unsigned expression 'sizeof(struct ESL_MSAFILE2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:412:5: style: Checking if unsigned expression 'sizeof(int)*known_alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:413:5: style: Checking if unsigned expression 'sizeof(int)*known_alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:421:5: style: Checking if unsigned expression 'sizeof(int)*(known_alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:422:5: style: Checking if unsigned expression 'sizeof(char)*(known_alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:425:5: style: Checking if unsigned expression 'sizeof(double**)*known_alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:429:2: style: Checking if unsigned expression 'sizeof(double*)*abc->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:431:4: style: Checking if unsigned expression 'sizeof(double)*abc->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:519:7: style: Checking if unsigned expression 'sizeof(double*)*alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:521:9: style: Checking if unsigned expression 'sizeof(double)*nppvals' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:525:9: style: Checking if unsigned expression '(alen+2)*sizeof(ESL_DSQ)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:528:9: style: Checking if unsigned expression 'sizeof(double*)*alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:530:4: style: Checking if unsigned expression 'sizeof(double)*(abc->K+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:567:3: style: Checking if unsigned expression '(alen+2)*sizeof(ESL_DSQ)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:570:3: style: Checking if unsigned expression 'sizeof(double*)*alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:572:5: style: Checking if unsigned expression 'sizeof(double)*(abc->K+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:577:3: style: Checking if unsigned expression 'sizeof(double*)*alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:579:5: style: Checking if unsigned expression 'sizeof(double)*nppvals' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:1102:3: style: Checking if unsigned expression 'sizeof(char)*(dst_len+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile2.c:147:37: style:inconclusive: Function 'esl_msafile2_OpenDigital' argument 4 names different: declaration 'ret_afp' definition 'ret_msafp'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_msafile2.h:55:117: note: Function 'esl_msafile2_OpenDigital' argument 4 names different: declaration 'ret_afp' definition 'ret_msafp'.
hmmer-3.4/easel/esl_msafile2.c:147:37: note: Function 'esl_msafile2_OpenDigital' argument 4 names different: declaration 'ret_afp' definition 'ret_msafp'.
hmmer-3.4/easel/esl_msafile2.c:800:34: style:inconclusive: Function 'esl_msafile2_RegurgitatePfam' argument 23 names different: declaration 'opt_nseq_written' definition 'opt_nseq_regurged'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_msafile2.h:65:90: note: Function 'esl_msafile2_RegurgitatePfam' argument 23 names different: declaration 'opt_nseq_written' definition 'opt_nseq_regurged'.
hmmer-3.4/easel/esl_msafile2.c:800:34: note: Function 'esl_msafile2_RegurgitatePfam' argument 23 names different: declaration 'opt_nseq_written' definition 'opt_nseq_regurged'.
hmmer-3.4/easel/esl_msafile2.c:354:105: style: Parameter 'known_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:798:68: style: Parameter 'seqs2regurg' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:799:22: style: Parameter 'seqs2skip' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:799:38: style: Parameter 'useme' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:1060:26: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:1094:21: style: Parameter 'src_str' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:1094:69: style: Parameter 'ngapA' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:1147:26: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile2.c:173:17: style: Unused variable: nc [unusedVariable]
hmmer-3.4/easel/esl_msafile_a2m.c:238:3: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:267:7: style: Checking if unsigned expression 'sizeof(int)*1' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:309:9: style: Checking if unsigned expression 'sizeof(char)*1' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:311:9: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*2' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:318:2: style: Checking if unsigned expression 'sizeof(int)*(ncons+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:413:3: style: Checking if unsigned expression 'sizeof(char)*(cpl+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:522:3: style: Checking if unsigned expression 'sizeof(char)*(alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:532:7: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*(alen+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:575:3: style: Checking if unsigned expression 'sizeof(char)*(alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:585:7: style: Checking if unsigned expression 'sizeof(char)*(alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_a2m.c:117:13: style: Variable 'threshold' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_msafile_a2m.c:508:55: style: Parameter 'nins' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_a2m.c:562:52: style: Parameter 'nins' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_afa.c:235:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile_afa.c:93:13: style: Variable 'threshold' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_msafile_clustal.c:367:105: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EASEL_VERSION [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile_clustal.c:353:3: style: Checking if unsigned expression 'sizeof(char)*(cpl+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_clustal.c:468:3: style: Checking if unsigned expression 'sizeof(char)*(msa->alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_clustal.c:469:3: style: Checking if unsigned expression 'sizeof(uint32_t)*msa->alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_clustal.c:533:3: style: Checking if unsigned expression 'sizeof(uint32_t)*(msa->alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_clustal.c:534:3: style: Checking if unsigned expression 'sizeof(char)*(msa->alen+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_clustal.c:91:13: style: Variable 'threshold' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_msafile_phylip.c:475:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile_phylip.c:505:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile_phylip.c:589:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile_phylip.c:621:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_msafile_phylip.c:427:3: style: Checking if unsigned expression 'sizeof(char)*(namewidth+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_phylip.c:502:3: style: Checking if unsigned expression 'sizeof(char)*(rpl+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_phylip.c:557:3: style: Checking if unsigned expression 'sizeof(char)*(namewidth+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_phylip.c:618:3: style: Checking if unsigned expression 'sizeof(char)*(rpl+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_phylip.c:867:3: style: Checking if unsigned expression 'sizeof(int)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_phylip.c:145:13: style: Variable 'threshold' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_msafile_phylip.c:999:31: style: Parameter 'p' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_phylip.c:1036:31: style: Parameter 'colcodes0' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_phylip.c:862:15: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_msafile_psiblast.c:338:3: style: Checking if unsigned expression 'sizeof(char)*(cpl+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_psiblast.c:89:13: style: Variable 'threshold' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_msafile_selex.c:301:3: style: Checking if unsigned expression 'sizeof(char)*(cpl+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:348:3: style: Checking if unsigned expression 'sizeof(struct ESL_SELEX_BLOCK)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:359:3: style: Checking if unsigned expression 'sizeof(char*)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:360:3: style: Checking if unsigned expression 'sizeof(esl_pos_t)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:361:3: style: Checking if unsigned expression 'sizeof(esl_pos_t)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:362:3: style: Checking if unsigned expression 'sizeof(int64_t)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:363:3: style: Checking if unsigned expression 'sizeof(int)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:364:3: style: Checking if unsigned expression 'sizeof(esl_pos_t)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:365:3: style: Checking if unsigned expression 'sizeof(esl_pos_t)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:570:5: style: Checking if unsigned expression 'sizeof(char*)*nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:574:5: style: Checking if unsigned expression 'sizeof(char*)*nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_selex.c:441:62: style:inconclusive: Function 'selex_ErrorInBlock' argument 3 names different: declaration 'idx' definition 'which'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_msafile_selex.c:66:73: note: Function 'selex_ErrorInBlock' argument 3 names different: declaration 'idx' definition 'which'.
hmmer-3.4/easel/esl_msafile_selex.c:441:62: note: Function 'selex_ErrorInBlock' argument 3 names different: declaration 'idx' definition 'which'.
hmmer-3.4/easel/esl_msafile_selex.c:144:13: style: Variable 'threshold' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_msafile_stockholm.c:384:3: style: Checking if unsigned expression 'sizeof(struct ESL_STOCKHOLM_PARSEDATA)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:413:3: style: Checking if unsigned expression 'sizeof(char)*16' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:414:3: style: Checking if unsigned expression 'sizeof(int)*16' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:417:3: style: Checking if unsigned expression 'sizeof(int64_t)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:801:2: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:802:2: style: Checking if unsigned expression 'sizeof(int64_t)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:812:2: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:813:2: style: Checking if unsigned expression 'sizeof(int64_t)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:823:2: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:824:2: style: Checking if unsigned expression 'sizeof(int64_t)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:1009:3: style: Checking if unsigned expression 'sizeof(char*)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:1010:3: style: Checking if unsigned expression 'sizeof(int64_t)*msa->sqalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:1140:3: style: Checking if unsigned expression 'sizeof(char)*(cpl+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msafile_stockholm.c:156:13: style: Variable 'threshold' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_msafile_stockholm.c:429:69: style: Parameter 'msa' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_stockholm.c:487:67: style: Parameter 'msa' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_stockholm.c:962:71: style: Parameter 'name' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_stockholm.c:990:74: style: Parameter 'tag' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msafile_stockholm.c:1027:74: style: Parameter 'tag' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msashuffle.c:215:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*(msa->nseq+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msashuffle.c:352:3: style: Checking if unsigned expression 'sizeof(int)*L' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msashuffle.c:353:3: style: Checking if unsigned expression 'sizeof(int)*L' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msashuffle.c:354:3: style: Checking if unsigned expression 'sizeof(int)*L' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msashuffle.c:450:3: style: Checking if unsigned expression 'sizeof(int)*L' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msashuffle.c:451:3: style: Checking if unsigned expression 'sizeof(int)*L' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msashuffle.c:452:3: style: Checking if unsigned expression 'sizeof(int)*L' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msashuffle.c:50:52: style: Parameter 'msa' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msashuffle.c:330:55: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msashuffle.c:330:69: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msashuffle.c:330:81: style: Parameter 'y' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msashuffle.c:429:55: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msashuffle.c:429:66: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msashuffle.c:429:75: style: Parameter 'y' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_msaweight.c:1047:23: style: The if condition is the same as the previous if condition [duplicateCondition]
hmmer-3.4/easel/esl_msaweight.c:1026:18: note: First condition
hmmer-3.4/easel/esl_msaweight.c:1047:23: note: Second condition
hmmer-3.4/easel/esl_msaweight.c:203:3: style: Checking if unsigned expression 'sizeof(int)*msa->alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:224:3: style: Checking if unsigned expression 'sizeof(int)*ncons' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:339:3: style: Checking if unsigned expression 'sizeof(int64_t)*nsamp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:500:3: style: Checking if unsigned expression 'sizeof(int)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:561:3: style: Checking if unsigned expression 'sizeof(struct ESL_MSAWEIGHT_CFG)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:597:3: style: Checking if unsigned expression 'sizeof(struct ESL_MSAWEIGHT_DAT)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:752:3: style: Checking if unsigned expression 'sizeof(double)*(T->N-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:877:3: style: Checking if unsigned expression 'sizeof(int)*nc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1008:3: style: Checking if unsigned expression 'sizeof(double)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1009:3: style: Checking if unsigned expression 'sizeof(double)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1010:3: style: Checking if unsigned expression 'sizeof(int)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1011:3: style: Checking if unsigned expression 'sizeof(int)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1030:7: style: Checking if unsigned expression 'sizeof(int)*msa->alen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1185:3: style: Checking if unsigned expression 'sizeof(int)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1186:3: style: Checking if unsigned expression 'sizeof(int)*msa->nseq' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_msaweight.c:1097:11: style: Variable 'sortwgt' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_normal.c:132:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_normal.c:139:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_normal.c:146:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_paml.c:83:19: style: Variable 'pamlorder' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_paml.c:84:19: style: Variable 'eslorder' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_rand64.c:523:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIu64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_rand64.c:98:3: style: Checking if unsigned expression 'sizeof(struct ESL_RAND64)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_rand64.c:147:32: style: Parameter 'rng' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_rand64.c:458:19: style: Variable 'mag01' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_rand64.c:517:39: style: Parameter 'rng' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_rand64.c:371:23: style: Variable 'mmin1inv' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_random.c:448:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIu32 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_random.c:95:3: style: Checking if unsigned expression 'sizeof(struct ESL_RANDOMNESS)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_random.c:155:3: style: Checking if unsigned expression 'sizeof(struct ESL_RANDOMNESS)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_random.c:519:34: style:inconclusive: Function 'esl_rnd_Gaussian' argument 1 names different: declaration 'rng' definition 'r'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_random.h:45:49: note: Function 'esl_rnd_Gaussian' argument 1 names different: declaration 'rng' definition 'r'.
hmmer-3.4/easel/esl_random.c:519:34: note: Function 'esl_rnd_Gaussian' argument 1 names different: declaration 'rng' definition 'r'.
hmmer-3.4/easel/esl_random.c:697:31: style:inconclusive: Function 'esl_rnd_Gamma' argument 1 names different: declaration 'rng' definition 'r'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_random.h:46:49: note: Function 'esl_rnd_Gamma' argument 1 names different: declaration 'rng' definition 'r'.
hmmer-3.4/easel/esl_random.c:697:31: note: Function 'esl_rnd_Gamma' argument 1 names different: declaration 'rng' definition 'r'.
hmmer-3.4/easel/esl_random.c:391:19: style: Variable 'mag01' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_random.c:443:47: style: Parameter 'r' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_random.c:527:17: style: Variable 'a' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_random.c:534:17: style: Variable 'd' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_random.c:540:17: style: Variable 't' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_random.c:547:17: style: Variable 'h' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_randomseq.c:133:11: style: Checking if unsigned expression 'sizeof(char)*(L+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:303:3: style: Checking if unsigned expression 'sizeof(char*)*26' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:304:3: style: Checking if unsigned expression 'sizeof(int)*26' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:305:3: style: Checking if unsigned expression 'sizeof(int)*26' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:307:5: style: Checking if unsigned expression 'sizeof(char)*(len-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:499:3: style: Checking if unsigned expression 'sizeof(char)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:858:7: style: Checking if unsigned expression 'sizeof(double)*abc->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:972:3: style: Checking if unsigned expression 'sizeof(int)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:973:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ*)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:974:3: style: Checking if unsigned expression 'sizeof(int)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:975:3: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:977:5: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*(L-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:1087:3: style: Checking if unsigned expression 'sizeof(char)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:1220:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:1301:3: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:1302:3: style: Checking if unsigned expression 'sizeof(double*)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:1304:7: style: Checking if unsigned expression 'sizeof(double)*K' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_randomseq.c:102:41: style:inconclusive: Function 'esl_rsq_Sample' argument 2 names different: declaration 'allowed_chars_flag' definition 'allowed_chars'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_randomseq.h:26:52: note: Function 'esl_rsq_Sample' argument 2 names different: declaration 'allowed_chars_flag' definition 'allowed_chars'.
hmmer-3.4/easel/esl_randomseq.c:102:41: note: Function 'esl_rsq_Sample' argument 2 names different: declaration 'allowed_chars_flag' definition 'allowed_chars'.
hmmer-3.4/easel/esl_randomseq.c:844:56: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_ratematrix.c:105:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:152:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:184:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:214:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:254:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:310:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:361:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:414:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslGENERAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ratematrix.c:82:17: style: Variable 'wagE' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_ratematrix.c:409:41: style: Parameter 'pi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_ratematrix.c:455:37: style: Parameter 'pi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_ratematrix.c:496:49: style: Parameter 'pi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_ratematrix.c:522:36: style: Parameter 'P' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_ratematrix.c:522:47: style: Parameter 'pi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_recorder.c:45:3: style: Checking if unsigned expression 'sizeof(struct ESL_RECORDER)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_recorder.c:56:3: style: Checking if unsigned expression 'sizeof(char*)*rc->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_recorder.c:59:3: style: Checking if unsigned expression 'sizeof(int)*rc->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_recorder.c:62:3: style: Checking if unsigned expression 'sizeof(off_t)*rc->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_recorder.c:197:36: style: Parameter 'rc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_recorder.c:211:39: style: Parameter 'rc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_recorder.c:224:36: style: Parameter 'rc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_red_black.c:109:17: warning: Either the condition 'parent==NULL' is redundant or there is possible null pointer dereference: parent. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_red_black.c:104:14: note: Assuming that condition 'parent==NULL' is not redundant
hmmer-3.4/easel/esl_red_black.c:103:16: note: Assignment to 'parent=node->parent'
hmmer-3.4/easel/esl_red_black.c:103:10: note: parent is assigned 'node->parent' here.
hmmer-3.4/easel/esl_red_black.c:109:17: note: Null pointer dereference
hmmer-3.4/easel/esl_red_black.c:114:6: warning: Either the condition 'grandparent==NULL' is redundant or there is possible null pointer dereference: grandparent. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_red_black.c:110:18: note: Assuming that condition 'grandparent==NULL' is not redundant
hmmer-3.4/easel/esl_red_black.c:109:23: note: Assignment to 'grandparent=parent->parent'
hmmer-3.4/easel/esl_red_black.c:109:15: note: grandparent is assigned 'parent->parent' here.
hmmer-3.4/easel/esl_red_black.c:114:6: note: Null pointer dereference
hmmer-3.4/easel/esl_red_black.c:21:3: style: Checking if unsigned expression 'sizeof(struct ESL_RED_BLACK_DOUBLEKEY)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_red_black.c:73:3: style: Checking if unsigned expression 'number*sizeof(struct ESL_RED_BLACK_DOUBLEKEY)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_regexp.c:1112:5: style: 'continue' is redundant since it is the last statement in a loop. [redundantContinue]
hmmer-3.4/easel/esl_regexp.c:1388:4: style:inconclusive: Consecutive return, break, continue, goto or throw statements are unnecessary. [duplicateBreak]
hmmer-3.4/easel/esl_regexp.c:100:3: style: Checking if unsigned expression 'sizeof(struct ESL_REGEXP)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_regexp.c:287:3: style: Checking if unsigned expression 'sizeof(char)*(len+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_regexp.c:655:2: style: Checking if unsigned expression 'sizeof(struct esl__regexp)+(unsigned long)co.regsize' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_regexp.c:1064:46: style:inconclusive: Function 'regc' argument 2 names different: declaration 'c' definition 'b'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_regexp.c:601:49: note: Function 'regc' argument 2 names different: declaration 'c' definition 'b'.
hmmer-3.4/easel/esl_regexp.c:1064:46: note: Function 'regc' argument 2 names different: declaration 'c' definition 'b'.
hmmer-3.4/easel/esl_regexp.c:1217:47: style:inconclusive: Function 'regtry' argument 2 names different: declaration 'rp' definition 'prog'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_regexp.c:1150:49: note: Function 'regtry' argument 2 names different: declaration 'rp' definition 'prog'.
hmmer-3.4/easel/esl_regexp.c:1217:47: note: Function 'regtry' argument 2 names different: declaration 'rp' definition 'prog'.
hmmer-3.4/easel/esl_regexp.c:1456:24: style:inconclusive: Function 'regnext' argument 1 names different: declaration 'node' definition 'p'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_regexp.c:600:28: note: Function 'regnext' argument 1 names different: declaration 'node' definition 'p'.
hmmer-3.4/easel/esl_regexp.c:1456:24: note: Function 'regnext' argument 1 names different: declaration 'node' definition 'p'.
hmmer-3.4/easel/esl_regexp.c:379:54: style: Parameter 'origin' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_regexp.c:1101:31: style: Parameter 'cp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_regexp.c:1101:50: style: Parameter 'val' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_regexp.c:1287:25: style: Variable 'opnd' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_regexp.c:1414:43: style: Parameter 'node' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_rootfinder.c:52:3: style: Checking if unsigned expression 'sizeof(struct ESL_ROOTFINDER)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_rootfinder.c:106:3: style: Checking if unsigned expression 'sizeof(struct ESL_ROOTFINDER)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_rootfinder.c:56:23: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_rootfinder.c:110:23: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_scorematrix.c:1577:12: style: Variable 'p.M' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/easel/esl_scorematrix.c:1576:7: note: p.M is assigned
hmmer-3.4/easel/esl_scorematrix.c:1577:12: note: p.M is overwritten
hmmer-3.4/easel/esl_scorematrix.c:56:3: style: Checking if unsigned expression 'sizeof(struct ESL_SCOREMATRIX)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:67:3: style: Checking if unsigned expression 'sizeof(int*)*abc->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:69:3: style: Checking if unsigned expression 'sizeof(char)*abc->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:71:3: style: Checking if unsigned expression 'sizeof(char)*(abc->Kp+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:74:3: style: Checking if unsigned expression 'sizeof(int)*abc->Kp*abc->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:1085:3: style: Checking if unsigned expression 'sizeof(int)*S->nc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:1698:3: style: Checking if unsigned expression 'sizeof(double)*S->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:1699:3: style: Checking if unsigned expression 'sizeof(double)*S->Kp' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_scorematrix.c:270:59: style: Parameter 'fi' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_scorematrix.c:270:71: style: Parameter 'fj' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_scorematrix.c:1526:17: style: Variable 'S' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:988:7: warning: Either the condition 'x>26' is redundant or the array 'ct[26]' is accessed at index 26, which is out of bounds. [arrayIndexOutOfBoundsCond]
hmmer-3.4/easel/esl_sq.c:987:20: note: Assuming that condition 'x>26' is not redundant
hmmer-3.4/easel/esl_sq.c:988:7: note: Array index out of bounds
hmmer-3.4/easel/esl_sq.c:2029:36: style: Expression is always false because 'else if' condition matches previous condition at line 2017. [multiCondition]
hmmer-3.4/easel/esl_sq.c:271:44: style: Checking if unsigned expression 'sizeof(char)*dst->salloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:285:5: style: Checking if unsigned expression 'sizeof(char*)*dst->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:286:5: style: Checking if unsigned expression 'sizeof(char*)*dst->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:289:7: style: Checking if unsigned expression 'sizeof(char)*src->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:290:7: style: Checking if unsigned expression 'sizeof(char)*src->salloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:788:7: style: Checking if unsigned expression 'sizeof(char)*(sq->n+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:863:3: style: Checking if unsigned expression 'sq->salloc*sizeof(ESL_DSQ)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:918:3: style: Checking if unsigned expression 'sq->salloc*sizeof(char)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1777:7: style: Checking if unsigned expression 'sizeof(char*)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1778:7: style: Checking if unsigned expression 'sizeof(char*)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1790:5: style: Checking if unsigned expression 'sizeof(char*)*sq->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1791:5: style: Checking if unsigned expression 'sizeof(char*)*sq->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1820:4: style: Checking if unsigned expression 'sizeof(char)*(strlen(ss)+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1828:2: style: Checking if unsigned expression 'sizeof(char)*(strlen(xr[x])+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1906:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1907:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1926:2: style: Checking if unsigned expression 'sizeof(char*)*sq->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1927:2: style: Checking if unsigned expression 'sizeof(char*)*sq->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1948:2: style: Checking if unsigned expression 'sizeof(char*)*sq->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1949:2: style: Checking if unsigned expression 'sizeof(char*)*sq->nxr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:1954:17: style: Checking if unsigned expression 'sizeof(char)*(sq->n+2)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2086:3: style: Checking if unsigned expression 'sizeof(char)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2156:3: style: Checking if unsigned expression 'sizeof(struct ESL_SQ)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2176:3: style: Checking if unsigned expression 'sizeof(struct ESL_SQ_BLOCK)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2183:3: style: Checking if unsigned expression 'sizeof(struct ESL_SQ)*count' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2227:3: style: Checking if unsigned expression 'sizeof(char)*sq->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2228:3: style: Checking if unsigned expression 'sizeof(char)*sq->aalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2229:3: style: Checking if unsigned expression 'sizeof(char)*sq->dalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2230:3: style: Checking if unsigned expression 'sizeof(char)*sq->srcalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2233:7: style: Checking if unsigned expression 'sizeof(ESL_DSQ)*sq->salloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2237:7: style: Checking if unsigned expression 'sizeof(char)*sq->salloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2258:3: style: Checking if unsigned expression 'sizeof(struct ESL_SQ)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2284:7: style: Checking if unsigned expression 'sizeof(char)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2291:7: style: Checking if unsigned expression 'sizeof(char)*sq->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2298:7: style: Checking if unsigned expression 'sizeof(char)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2305:7: style: Checking if unsigned expression 'sizeof(char)*sq->dalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2312:7: style: Checking if unsigned expression 'sizeof(char)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2319:7: style: Checking if unsigned expression 'sizeof(char)*sq->aalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:2325:3: style: Checking if unsigned expression 'sizeof(char)*sq->srcalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sq.c:154:34: style:inconclusive: Function 'esl_sq_Grow' argument 2 names different: declaration 'ret_nsafe' definition 'opt_nsafe'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sq.h:159:51: note: Function 'esl_sq_Grow' argument 2 names different: declaration 'ret_nsafe' definition 'opt_nsafe'.
hmmer-3.4/easel/esl_sq.c:154:34: note: Function 'esl_sq_Grow' argument 2 names different: declaration 'ret_nsafe' definition 'opt_nsafe'.
hmmer-3.4/easel/esl_sq.c:583:35: style:inconclusive: Function 'esl_sq_DestroyBlock' argument 1 names different: declaration 'sqBlock' definition 'block'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sq.h:198:56: note: Function 'esl_sq_DestroyBlock' argument 1 names different: declaration 'sqBlock' definition 'block'.
hmmer-3.4/easel/esl_sq.c:583:35: note: Function 'esl_sq_DestroyBlock' argument 1 names different: declaration 'sqBlock' definition 'block'.
hmmer-3.4/easel/esl_sq.c:775:97: style:inconclusive: Function 'esl_sq_CreateDigitalFrom' argument 4 names different: declaration 'L' definition 'n'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sq.h:185:14: note: Function 'esl_sq_CreateDigitalFrom' argument 4 names different: declaration 'L' definition 'n'.
hmmer-3.4/easel/esl_sq.c:775:97: note: Function 'esl_sq_CreateDigitalFrom' argument 4 names different: declaration 'L' definition 'n'.
hmmer-3.4/easel/esl_sq.c:373:24: style: Parameter 'sq1' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sq.c:373:37: style: Parameter 'sq2' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sq.c:977:30: style: Parameter 'sq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sq.c:1754:11: style: Variable 'gapchars' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:1755:11: style: Variable 'acc' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:1756:11: style: Variable 'desc' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:1757:11: style: Variable 'ss' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:1887:11: style: Variable 'acc' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:1888:11: style: Variable 'desc' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:1889:11: style: Variable 'ss' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:1890:11: style: Variable 'gapchars' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sq.c:2010:25: style: Parameter 'sq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sq.c:648:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_sqio.c:128:3: style: Checking if unsigned expression 'sizeof(struct ESL_SQFILE)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:166:3: style: Checking if unsigned expression 'sizeof(char)*(strlen(filename)+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:190:7: style: Checking if unsigned expression 'sizeof(char)*(strlen(s1)+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:193:7: style: Checking if unsigned expression 'sizeof(char)*(strlen(filename)+strlen(list)+3)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1163:3: style: Checking if unsigned expression 'sizeof(struct ESL_SQCACHE)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1179:3: style: Checking if unsigned expression 'strlen(seqfile)+1' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1182:3: style: Checking if unsigned expression 'sizeof(struct ESL_SQ)*(count+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1190:3: style: Checking if unsigned expression 'res_size+2' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1191:3: style: Checking if unsigned expression 'hdr_size' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1391:7: style: Checking if unsigned expression 'sizeof(char*)*1' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1396:7: style: Checking if unsigned expression 'sizeof(char*)*1' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1405:7: style: Checking if unsigned expression 'sizeof(char*)*1' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1414:5: style: Checking if unsigned expression 'sizeof(char**)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1415:5: style: Checking if unsigned expression 'sizeof(char*)*msa->ngr' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1418:7: style: Checking if unsigned expression 'sizeof(char*)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:1419:7: style: Checking if unsigned expression 'sizeof(char)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio.c:85:29: style:inconclusive: Function 'esl_sqfile_Open' argument 1 names different: declaration 'seqfile' definition 'filename'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio.h:124:41: note: Function 'esl_sqfile_Open' argument 1 names different: declaration 'seqfile' definition 'filename'.
hmmer-3.4/easel/esl_sqio.c:85:29: note: Function 'esl_sqfile_Open' argument 1 names different: declaration 'seqfile' definition 'filename'.
hmmer-3.4/easel/esl_sqio.c:85:43: style:inconclusive: Function 'esl_sqfile_Open' argument 2 names different: declaration 'fmt' definition 'format'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio.h:124:54: note: Function 'esl_sqfile_Open' argument 2 names different: declaration 'fmt' definition 'format'.
hmmer-3.4/easel/esl_sqio.c:85:43: note: Function 'esl_sqfile_Open' argument 2 names different: declaration 'fmt' definition 'format'.
hmmer-3.4/easel/esl_sqio.c:543:22: style:inconclusive: Function 'esl_sqio_Parse' argument 1 names different: declaration 'buffer' definition 'buf'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio.h:136:42: note: Function 'esl_sqio_Parse' argument 1 names different: declaration 'buffer' definition 'buf'.
hmmer-3.4/easel/esl_sqio.c:543:22: note: Function 'esl_sqio_Parse' argument 1 names different: declaration 'buffer' definition 'buf'.
hmmer-3.4/easel/esl_sqio.c:123:15: style: Variable 's1' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio.c:832:43: style: Parameter 'xchars' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sqio.c:1375:27: style: Parameter 'sq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sqio_ascii.c:198:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdin [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:1968:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIi64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:2269:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:2617:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:2732:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:2759:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:2852:5: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:2938:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:3029:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:3106:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:3249:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ascii.c:1516:11: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ascii.c:1520:22: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ascii.c:1516:11: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ascii.c:1517:11: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ascii.c:1520:22: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ascii.c:1517:11: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ascii.c:1586:9: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ascii.c:1591:20: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ascii.c:1586:9: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ascii.c:1587:9: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ascii.c:1591:20: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ascii.c:1587:9: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ascii.c:1190:46: style: Checking if unsigned expression 'sizeof(char)*sq->salloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ascii.c:2066:9: style: Checking if unsigned expression 'sizeof(char)*4096' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ascii.c:137:24: style:inconclusive: Function 'esl_sqascii_Open' argument 1 names different: declaration 'seqfile' definition 'filename'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio_ascii.h:80:36: note: Function 'esl_sqascii_Open' argument 1 names different: declaration 'seqfile' definition 'filename'.
hmmer-3.4/easel/esl_sqio_ascii.c:137:24: note: Function 'esl_sqascii_Open' argument 1 names different: declaration 'seqfile' definition 'filename'.
hmmer-3.4/easel/esl_sqio_ascii.c:3159:42: style:inconclusive: Function 'esl_sqascii_WriteFasta' argument 2 names different: declaration 's' definition 'sq'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio_ascii.h:81:54: note: Function 'esl_sqascii_WriteFasta' argument 2 names different: declaration 's' definition 'sq'.
hmmer-3.4/easel/esl_sqio_ascii.c:3159:42: note: Function 'esl_sqascii_WriteFasta' argument 2 names different: declaration 's' definition 'sq'.
hmmer-3.4/easel/esl_sqio_ascii.c:3159:50: style:inconclusive: Function 'esl_sqascii_WriteFasta' argument 3 names different: declaration 'update' definition 'save_offsets'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio_ascii.h:81:61: note: Function 'esl_sqascii_WriteFasta' argument 3 names different: declaration 'update' definition 'save_offsets'.
hmmer-3.4/easel/esl_sqio_ascii.c:3159:50: note: Function 'esl_sqascii_WriteFasta' argument 3 names different: declaration 'update' definition 'save_offsets'.
hmmer-3.4/easel/esl_sqio_ascii.c:3269:48: style:inconclusive: Function 'esl_sqascii_Parse' argument 3 names different: declaration 's' definition 'sq'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio_ascii.h:82:60: note: Function 'esl_sqascii_Parse' argument 3 names different: declaration 's' definition 'sq'.
hmmer-3.4/easel/esl_sqio_ascii.c:3269:48: note: Function 'esl_sqascii_Parse' argument 3 names different: declaration 's' definition 'sq'.
hmmer-3.4/easel/esl_sqio_ascii.c:137:24: style: Parameter 'filename' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sqio_ascii.c:2120:9: style: Variable 'nlp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ascii.c:140:15: style: Unused variable: n [unusedVariable]
hmmer-3.4/easel/esl_sqio_ascii.c:141:15: style: Unused variable: nc [unusedVariable]
hmmer-3.4/easel/esl_sqio_ascii.c:2401:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_sqio_ascii.c:2413:19: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_sqio_ascii.c:2628:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_sqio_ascii.c:2743:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_sqio_ascii.c:2858:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_sqio_ascii.c:2922:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_sqio_ncbi.c:994:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_sqio_ncbi.c:268:10: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:268:10: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:272:3: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:272:3: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:273:28: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:273:28: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:278:3: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:278:3: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:279:28: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:279:28: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:284:3: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:284:3: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:285:28: warning: Either the condition 'name!=NULL' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:285:28: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:1243:8: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:1247:19: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:1243:8: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:1244:8: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:1247:19: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:1244:8: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:1311:7: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:1320:21: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:1311:7: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:1312:7: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:1320:21: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:1312:7: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:1313:7: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:1320:21: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:1313:7: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:1315:7: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:1320:21: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:1315:7: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:1317:7: warning: Either the condition 'tmpsq!=NULL' is redundant or there is possible null pointer dereference: tmpsq. [nullPointerRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:1320:21: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:1317:7: note: Null pointer dereference
hmmer-3.4/easel/esl_sqio_ncbi.c:271:14: warning: Either the condition 'name!=NULL' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:271:14: note: Null pointer addition
hmmer-3.4/easel/esl_sqio_ncbi.c:277:14: warning: Either the condition 'name!=NULL' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:277:14: note: Null pointer addition
hmmer-3.4/easel/esl_sqio_ncbi.c:283:14: warning: Either the condition 'name!=NULL' is redundant or there is pointer arithmetic with NULL pointer. [nullPointerArithmeticRedundantCheck]
hmmer-3.4/easel/esl_sqio_ncbi.c:293:12: note: Assuming that condition 'name!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ncbi.c:283:14: note: Null pointer addition
hmmer-3.4/easel/esl_sqio_ncbi.c:225:3: style: Checking if unsigned expression 'sizeof(char)*(len+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:232:3: style: Checking if unsigned expression 'sizeof(char)*(len+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:267:3: style: Checking if unsigned expression 'sizeof(char)*(len+5)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:336:3: style: Checking if unsigned expression 'sizeof(char)*(len+5)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:349:3: style: Checking if unsigned expression 'sizeof(char)*dbsize' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:425:2: style: Checking if unsigned expression 'sizeof(char)*strlen(dbptr)+5' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:524:3: style: Checking if unsigned expression 'sizeof(uint32_t)*1024' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:525:3: style: Checking if unsigned expression 'sizeof(uint32_t)*1024' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:532:5: style: Checking if unsigned expression 'sizeof(uint32_t)*1024' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:536:3: style: Checking if unsigned expression 'sizeof(unsigned char)*2048' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_sqio_ncbi.c:123:23: style:inconclusive: Function 'esl_sqncbi_Open' argument 1 names different: declaration 'seqfile' definition 'filename'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_sqio_ncbi.h:101:35: note: Function 'esl_sqncbi_Open' argument 1 names different: declaration 'seqfile' definition 'filename'.
hmmer-3.4/easel/esl_sqio_ncbi.c:123:23: note: Function 'esl_sqncbi_Open' argument 1 names different: declaration 'seqfile' definition 'filename'.
hmmer-3.4/easel/esl_sqio_ncbi.c:259:44: style: Parameter 'filename' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:314:47: style: Parameter 'filename' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:668:31: style: Parameter 'sqfp' can be declared as pointer to const. However it seems that 'sqncbi_SetDigital' is a callback function, if 'sqfp' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_sqio_ncbi.c:178:30: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_sqio_ncbi.c:668:31: note: Parameter 'sqfp' can be declared as pointer to const
hmmer-3.4/easel/esl_sqio_ncbi.c:1346:25: style: Parameter 'sqfp' can be declared as pointer to const. However it seems that 'sqncbi_Echo' is a callback function, if 'sqfp' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_sqio_ncbi.c:187:30: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_sqio_ncbi.c:1346:25: note: Parameter 'sqfp' can be declared as pointer to const
hmmer-3.4/easel/esl_sqio_ncbi.c:1346:55: style: Parameter 'ofp' can be declared as pointer to const. However it seems that 'sqncbi_Echo' is a callback function, if 'ofp' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_sqio_ncbi.c:187:30: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_sqio_ncbi.c:1346:55: note: Parameter 'ofp' can be declared as pointer to const
hmmer-3.4/easel/esl_sqio_ncbi.c:1511:22: style: Variable 'volume' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:2134:20: style: Variable 'ncbi' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:2270:18: style: Variable 'limit' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:2311:18: style: Variable 'c' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:2312:18: style: Variable 'limit' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:2347:18: style: Variable 'limit' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:2378:18: style: Variable 'limit' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:2413:18: style: Variable 'limit' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:3251:18: style: Variable 'ptr' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_sqio_ncbi.c:1553:23: error: Uninitialized struct member: volume.start_seq [uninitStructMember]
hmmer-3.4/easel/esl_sqio_ncbi.c:1552:13: error: Uninitialized struct member: volume.end_seq [uninitStructMember]
hmmer-3.4/easel/esl_sqio_ncbi.c:2980:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/esl_ssi.c:869:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRIu32 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_ssi.c:584:18: style: Condition 'cmp>0' is always true [knownConditionTrueFalse]
hmmer-3.4/easel/esl_ssi.c:581:18: note: Assuming that condition 'cmp==0' is not redundant
hmmer-3.4/easel/esl_ssi.c:584:18: note: Condition 'cmp>0' is always true
hmmer-3.4/easel/esl_ssi.c:1082:62: style: Condition 'strlen(ns->ptmpfile)>256' is always false [knownConditionTrueFalse]
hmmer-3.4/easel/esl_ssi.c:1082:32: note: Assuming that condition 'strlen(ns->ptmpfile)>256' is not redundant
hmmer-3.4/easel/esl_ssi.c:1082:62: note: Condition 'strlen(ns->ptmpfile)>256' is always false
hmmer-3.4/easel/esl_ssi.c:1082:38: style: Same expression on both sides of '||'. [duplicateExpression]
hmmer-3.4/easel/esl_ssi.c:60:3: style: Checking if unsigned expression 'sizeof(struct ESL_SSI)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:112:3: style: Checking if unsigned expression 'sizeof(char*)*ssi->nfiles' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:114:3: style: Checking if unsigned expression 'sizeof(uint32_t)*ssi->nfiles' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:115:3: style: Checking if unsigned expression 'sizeof(uint32_t)*ssi->nfiles' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:116:3: style: Checking if unsigned expression 'sizeof(uint32_t)*ssi->nfiles' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:117:3: style: Checking if unsigned expression 'sizeof(uint32_t)*ssi->nfiles' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:122:7: style: Checking if unsigned expression 'sizeof(char)*ssi->flen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:198:2: style: Checking if unsigned expression 'sizeof(char)*ssi->plen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:262:3: style: Checking if unsigned expression 'sizeof(char)*ssi->plen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:568:3: style: Checking if unsigned expression 'sizeof(char)*klen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:633:3: style: Checking if unsigned expression 'sizeof(struct ESL_NEWSSI)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:672:3: style: Checking if unsigned expression 'sizeof(char*)*16' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:675:3: style: Checking if unsigned expression 'sizeof(uint32_t)*16' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:676:3: style: Checking if unsigned expression 'sizeof(uint32_t)*16' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:677:3: style: Checking if unsigned expression 'sizeof(uint32_t)*16' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:678:3: style: Checking if unsigned expression 'sizeof(struct ESL_PKEY)*128' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:681:3: style: Checking if unsigned expression 'sizeof(struct ESL_SKEY)*128' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:783:11: style: Checking if unsigned expression 'bpl' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:783:23: style: Checking if unsigned expression 'rpl' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:1039:3: style: Checking if unsigned expression 'sizeof(char)*ns->flen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:1040:3: style: Checking if unsigned expression '(1>(sizeof(char)*ns->plen))?(1):(sizeof(char)*ns->plen)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:1041:27: style: Checking if unsigned expression 'sizeof(char)*ns->slen' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_ssi.c:432:12: warning: Either the condition 'r==0' is redundant or there is division by zero at line 432. [zerodivcond]
hmmer-3.4/easel/esl_ssi.c:433:9: note: Assuming that condition 'r==0' is not redundant
hmmer-3.4/easel/esl_ssi.c:432:12: note: Division by zero
hmmer-3.4/easel/esl_ssi.c:1723:32: style:inconclusive: Function 'esl_fread_offset' argument 2 names different: declaration 'mode' definition 'sz'. [funcArgNamesDifferent]
hmmer-3.4/easel/esl_ssi.h:153:43: note: Function 'esl_fread_offset' argument 2 names different: declaration 'mode' definition 'sz'.
hmmer-3.4/easel/esl_ssi.c:1723:32: note: Function 'esl_fread_offset' argument 2 names different: declaration 'mode' definition 'sz'.
hmmer-3.4/easel/esl_ssi.c:1450:13: style: Variable 'key1' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_ssi.c:1451:13: style: Variable 'key2' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_ssi.c:1459:13: style: Variable 'key1' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_ssi.c:1460:13: style: Variable 'key2' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_stack.c:50:3: style: Checking if unsigned expression 'sizeof(struct ESL_STACK)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stack.c:63:3: style: Checking if unsigned expression 'sizeof(int)*ns->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stack.c:87:3: style: Checking if unsigned expression 'sizeof(struct ESL_STACK)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stack.c:100:3: style: Checking if unsigned expression 'sizeof(char)*cs->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stack.c:124:3: style: Checking if unsigned expression 'sizeof(struct ESL_STACK)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stack.c:137:3: style: Checking if unsigned expression 'sizeof(void*)*ps->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stack.c:443:34: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_stats.c:733:3: style: Checking if unsigned expression 'sizeof(double)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stats.c:124:17: style: Variable 'cof' can be declared as const array [constVariable]
hmmer-3.4/easel/esl_stopwatch.c:135:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable CLOCKS_PER_SEC [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_stopwatch.c:37:3: style: Checking if unsigned expression 'sizeof(struct ESL_STOPWATCH)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_stopwatch.c:191:48: style: Parameter 'w' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_stopwatch.c:191:57: style: Parameter 'prefix' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_stopwatch.c:222:41: style: Parameter 'w' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_stopwatch.c:252:61: style: Parameter 'w' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_stretchexp.c:79:23: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_stretchexp.c:118:24: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_stretchexp.c:216:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_stretchexp.c:229:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_stretchexp.c:242:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_stretchexp.c:255:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_stretchexp.c:329:27: style: Parameter 'p' can be declared as pointer to const. However it seems that 'sxp_complete_func' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_stretchexp.c:380:12: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_stretchexp.c:329:27: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_stretchexp.c:331:20: style: Variable 'data' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_stretchexp.c:399:34: style: Parameter 'p' can be declared as pointer to const. However it seems that 'sxp_complete_binned_func' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_stretchexp.c:479:12: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_stretchexp.c:399:34: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_subcmd.c:70:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_swat.c:55:3: style: Checking if unsigned expression 'sizeof(int*)*6' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_swat.c:57:3: style: Checking if unsigned expression 'sizeof(int)*6*(L+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_swat.c:39:25: style: Parameter 'x' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_swat.c:39:44: style: Parameter 'y' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_swat.c:44:15: style: Variable 'mp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_swat.c:44:26: style: Variable 'ixp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_swat.c:44:38: style: Variable 'iyp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_swat.c:210:19: style: Parameter 's1' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_swat.c:210:29: style: Parameter 's2' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_swat.c:210:50: style: Parameter 'S' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_tree.c:56:3: style: Checking if unsigned expression 'sizeof(struct ESL_TREE)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:84:3: style: Checking if unsigned expression 'sizeof(int)*(ntaxa-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:85:3: style: Checking if unsigned expression 'sizeof(int)*(ntaxa-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:86:3: style: Checking if unsigned expression 'sizeof(int)*(ntaxa-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:87:3: style: Checking if unsigned expression 'sizeof(double)*(ntaxa-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:88:3: style: Checking if unsigned expression 'sizeof(double)*(ntaxa-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:263:3: style: Checking if unsigned expression 'sizeof(int)*T->N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:299:3: style: Checking if unsigned expression 'sizeof(int)*(T->N-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:345:3: style: Checking if unsigned expression 'sizeof(char*)*T->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:357:4: style: Checking if unsigned expression 'sizeof(char)*32' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:396:3: style: Checking if unsigned expression 'sizeof(int)*(T->N-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:414:5: style: Checking if unsigned expression 'sizeof(char*)*(T2->nalloc-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:418:5: style: Checking if unsigned expression 'sizeof(int)*T2->nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:483:3: style: Checking if unsigned expression 'sizeof(double)*T->N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1006:3: style: Checking if unsigned expression 'sizeof(char)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1063:3: style: Checking if unsigned expression 'sizeof(char)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1107:3: style: Checking if unsigned expression 'sizeof(char)*nalloc' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1196:3: style: Checking if unsigned expression 'sizeof(char*)*32' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1197:3: style: Checking if unsigned expression 'sizeof(char*)*31' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1483:3: style: Checking if unsigned expression 'sizeof(int)*(T1->N-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1484:3: style: Checking if unsigned expression 'sizeof(int)*T1->N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1610:3: style: Checking if unsigned expression 'sizeof(int)*D->n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1611:3: style: Checking if unsigned expression 'sizeof(int)*D->n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1612:3: style: Checking if unsigned expression 'sizeof(double)*(D->n-1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1851:3: style: Checking if unsigned expression 'sizeof(int)*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:1852:3: style: Checking if unsigned expression 'sizeof(int)*N' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_tree.c:142:33: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_tree.c:1577:29: style: Parameter 'D_original' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_varint.c:232:13: style: Condition '~code==0' is always false [knownConditionTrueFalse]
hmmer-3.4/easel/esl_varint.c:57:12: style: Same expression used in consecutive assignments of 'code' and 'q'. [duplicateAssignExpression]
hmmer-3.4/easel/esl_varint.c:61:3: note: Same expression used in consecutive assignments of 'code' and 'q'.
hmmer-3.4/easel/esl_varint.c:57:12: note: Same expression used in consecutive assignments of 'code' and 'q'.
hmmer-3.4/easel/esl_varint.c:345:13: error: Shifting by a negative value is undefined behaviour [shiftNegative]
hmmer-3.4/easel/esl_varint.c:345:20: warning: Expression '63-2*b' can have a negative value. That is converted to an unsigned value and used in an unsigned calculation. [signConversion]
hmmer-3.4/easel/esl_varint.c:343:17: note: Assuming that condition 'b<64' is not redundant
hmmer-3.4/easel/esl_varint.c:345:20: note: Negative value is converted to an unsigned value
hmmer-3.4/easel/esl_varint.c:53:17: style: int result is assigned to long variable. If the variable is long to avoid loss of information, then you have loss of information. [truncLongCastAssignment]
hmmer-3.4/easel/esl_varint.c:471:7: warning: Uninitialized variable: grp [uninitvar]
hmmer-3.4/easel/esl_varint.c:465:17: note: Assuming condition is false
hmmer-3.4/easel/esl_varint.c:471:7: note: Uninitialized variable: grp
hmmer-3.4/easel/esl_vectorops.c:1026:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_vectorops.c:1044:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_vectorops.c:1062:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_vectorops.c:1080:47: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/esl_vectorops.c:1329:13: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_vectorops.c:1325:10: note: Assignment 'sum=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_vectorops.c:1326:17: note: Assuming condition is false
hmmer-3.4/easel/esl_vectorops.c:1329:13: note: Invalid argument
hmmer-3.4/easel/esl_vectorops.c:1344:14: warning: Invalid logf() argument nr 1. The value is 0 but the valid values are '1.4013e-45:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_vectorops.c:1340:10: note: Assignment 'sum=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_vectorops.c:1341:17: note: Assuming condition is false
hmmer-3.4/easel/esl_vectorops.c:1344:14: note: Invalid argument
hmmer-3.4/easel/esl_vectorops.c:1359:14: warning: Invalid log2() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_vectorops.c:1355:10: note: Assignment 'sum=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_vectorops.c:1356:17: note: Assuming condition is false
hmmer-3.4/easel/esl_vectorops.c:1359:14: note: Invalid argument
hmmer-3.4/easel/esl_vectorops.c:1374:15: warning: Invalid log2f() argument nr 1. The value is 0 but the valid values are '1.4013e-45:'. [invalidFunctionArg]
hmmer-3.4/easel/esl_vectorops.c:1370:10: note: Assignment 'sum=0.0', assigned value is 0.0
hmmer-3.4/easel/esl_vectorops.c:1371:17: note: Assuming condition is false
hmmer-3.4/easel/esl_vectorops.c:1374:15: note: Invalid argument
hmmer-3.4/easel/esl_vectorops.c:1592:3: style: Checking if unsigned expression 'sizeof(double)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_vectorops.c:1612:3: style: Checking if unsigned expression 'sizeof(float)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_vectorops.c:1632:3: style: Checking if unsigned expression 'sizeof(double)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_vectorops.c:1652:3: style: Checking if unsigned expression 'sizeof(float)*n' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_vectorops.c:1233:44: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_vectorops.c:1240:45: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_vectorops.c:1247:45: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_vectorops.c:1254:46: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_vectorops.c:1106:21: style: Parameter 'src' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_vectorops.c:1112:20: style: Parameter 'src' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_vectorops.c:1118:18: style: Parameter 'src' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_vectorops.c:1124:18: style: Parameter 'src' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_weibull.c:82:37: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_weibull.c:85:33: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_weibull.c:122:24: style: Using NaN/Inf in a computation. [nanInArithmeticExpression]
hmmer-3.4/easel/esl_weibull.c:195:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_weibull.c:208:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_weibull.c:221:11: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_weibull.c:234:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_weibull.c:313:18: style: Parameter 'p' can be declared as pointer to const. However it seems that 'wei_func' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_weibull.c:389:11: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_weibull.c:313:18: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_weibull.c:316:20: style: Variable 'data' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/esl_weibull.c:413:25: style: Parameter 'p' can be declared as pointer to const. However it seems that 'wei_binned_func' is a callback function, if 'p' is declared with const you might also need to cast function pointer(s). [constParameterCallback]
hmmer-3.4/easel/esl_weibull.c:518:11: note: You might need to cast the function pointer here
hmmer-3.4/easel/esl_weibull.c:413:25: note: Parameter 'p' can be declared as pointer to const
hmmer-3.4/easel/esl_wuss.c:182:37: style: Array index 'j' is used before limits check. [arrayIndexThenCheck]
hmmer-3.4/easel/esl_wuss.c:406:37: style: Array index 'j' is used before limits check. [arrayIndexThenCheck]
hmmer-3.4/easel/esl_wuss.c:186:3: style: Checking if unsigned expression 'sizeof(int)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_wuss.c:410:3: style: Checking if unsigned expression 'sizeof(int)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_wuss.c:649:3: style: Checking if unsigned expression 'sizeof(int)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_wuss.c:650:3: style: Checking if unsigned expression 'sizeof(char)*(n+1)' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/esl_wuss.c:51:19: style: Parameter 'ss' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_wuss.c:559:19: style: Parameter 'ss' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_wuss.c:600:19: style: Parameter 'kh' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_wuss.c:694:25: style: Parameter 'ss1' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/esl_wuss.c:727:24: style: Parameter 'ss' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/cmd_alistat.c:35:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_alistat.c:78:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_alistat.c:157:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_downsample.c:40:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_downsample.c:75:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslENOTFOUND [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_downsample.c:123:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_downsample.c:207:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_downsample.c:251:20: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/cmd_filter.c:51:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_filter.c:132:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_filter.c:90:16: style: Variable 'outfmt' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/easel/miniapps/cmd_filter.c:88:10: note: outfmt is assigned
hmmer-3.4/easel/miniapps/cmd_filter.c:90:16: note: outfmt is overwritten
hmmer-3.4/easel/miniapps/cmd_index.c:53:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/cmd_index.c:132:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/easel.c:66:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/easel.c:72:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ESL_SUBCMD [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/easel.c:90:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ESL_SUBCMD [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-afetch.c:30:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-afetch.c:42:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-afetch.c:73:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-afetch.c:176:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslBUFFER_MMAP [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-afetch.c:250:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-afetch.c:308:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslENOTFOUND [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-afetch.c:360:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:141:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:778:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:818:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:858:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:966:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1019:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1066:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1189:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1349:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEOD [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1388:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1476:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1518:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1622:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1657:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1691:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1755:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDSQ_SENTINEL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1794:43: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1930:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1968:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2045:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2128:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2175:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2284:53: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINCOMPAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2468:48: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2564:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2647:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2708:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDSQ_SENTINEL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2760:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEMEM [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2797:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2871:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2994:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3045:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3224:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3255:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3352:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:571:11: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:589:11: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:593:11: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:602:11: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:679:11: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2299:6: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3063:10: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3068:10: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3073:10: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3080:7: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3082:15: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3093:9: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3106:9: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3119:9: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3157:11: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3173:8: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3185:10: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alimanip.c:798:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:939:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:997:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1037:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1151:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1362:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1454:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1495:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1552:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1586:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1633:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1669:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1729:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1768:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1846:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1941:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2003:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2209:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2407:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2517:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2724:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2834:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2978:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3321:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3354:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1510:40: style:inconclusive: Function 'expand_msa2mask' argument 2 names different: declaration 'msa1' definition 'msa'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-alimanip.c:47:53: note: Function 'expand_msa2mask' argument 2 names different: declaration 'msa1' definition 'msa'.
hmmer-3.4/easel/miniapps/esl-alimanip.c:1510:40: note: Function 'expand_msa2mask' argument 2 names different: declaration 'msa1' definition 'msa'.
hmmer-3.4/easel/miniapps/esl-alimanip.c:1510:68: style:inconclusive: Function 'expand_msa2mask' argument 4 names different: declaration 'newmsa1' definition 'newmsa'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-alimanip.c:47:82: note: Function 'expand_msa2mask' argument 4 names different: declaration 'newmsa1' definition 'newmsa'.
hmmer-3.4/easel/miniapps/esl-alimanip.c:1510:68: note: Function 'expand_msa2mask' argument 4 names different: declaration 'newmsa1' definition 'newmsa'.
hmmer-3.4/easel/miniapps/esl-alimanip.c:772:54: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:813:56: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:813:93: style: Parameter 'mask_for_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1058:9: style: Variable 'offset' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1372:32: style: Parameter 'order' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1598:63: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1680:72: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1780:47: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2096:48: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2454:34: style: Parameter 'diff' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2637:84: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2788:59: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3209:58: style: Parameter 'orig_aseq' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3209:84: style: Parameter 'toadd' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimanip.c:799:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:943:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1152:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1363:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1455:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2728:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2835:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3355:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimanip.c:774:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:856:11: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1053:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1338:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1374:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1479:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1564:8: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1627:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1663:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1724:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1762:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:1782:8: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2702:11: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:2790:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3238:8: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-alimanip.c:3335:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimap.c:71:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslERRBUFSIZE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimap.c:219:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimap.c:472:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimap.c:529:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimap.c:587:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslFAIL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimap.c:416:30: style: Condition 'tb[apos1][apos2]!=-1' is always true [knownConditionTrueFalse]
hmmer-3.4/easel/miniapps/esl-alimap.c:598:5: warning:inconclusive: Possible null pointer dereference: mask [nullPointer]
hmmer-3.4/easel/miniapps/esl-alimap.c:583:16: note: Assignment 'mask=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-alimap.c:598:5: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-alimap.c:599:25: warning:inconclusive: Possible null pointer dereference: mask [nullPointer]
hmmer-3.4/easel/miniapps/esl-alimap.c:583:16: note: Assignment 'mask=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-alimap.c:599:25: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-alimap.c:511:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimap.c:683:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimap.c:575:75: style: Parameter 'a2rf_map1' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimap.c:575:91: style: Parameter 'a2rf_map2' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimap.c:575:107: style: Parameter 'rf2a_map1' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimap.c:575:163: style: Parameter 'msa1_to_msa2_map' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimap.c:512:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimap.c:685:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimap.c:465:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimap.c:577:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:86:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:660:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:704:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:756:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:789:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:834:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:927:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:1040:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:1133:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:1189:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimask.c:533:7: style: The if condition is the same as the previous if condition [duplicateCondition]
hmmer-3.4/easel/miniapps/esl-alimask.c:524:6: note: First condition
hmmer-3.4/easel/miniapps/esl-alimask.c:533:7: note: Second condition
hmmer-3.4/easel/miniapps/esl-alimask.c:932:15: warning:inconclusive: Possible null pointer dereference: pp_ct [nullPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:921:20: note: Assignment 'pp_ct=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-alimask.c:932:15: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-alimask.c:933:18: warning:inconclusive: Possible null pointer dereference: pp_ct [nullPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:921:20: note: Assignment 'pp_ct=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-alimask.c:933:18: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-alimask.c:1150:3: warning:inconclusive: Possible null pointer dereference: mask [nullPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:1129:16: note: Assignment 'mask=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-alimask.c:1150:3: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-alimask.c:1201:12: style: Checking if unsigned expression 'end' is less than zero. [unsignedLessThanZero]
hmmer-3.4/easel/miniapps/esl-alimask.c:625:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:679:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:735:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:804:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:851:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:954:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:1100:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:1159:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimask.c:694:83: style:inconclusive: Function 'map_rfpos_to_apos' argument 4 names different: declaration 'i_am_rf' definition 'ret_i_am_rf'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-alimask.c:28:83: note: Function 'map_rfpos_to_apos' argument 4 names different: declaration 'i_am_rf' definition 'ret_i_am_rf'.
hmmer-3.4/easel/miniapps/esl-alimask.c:694:83: note: Function 'map_rfpos_to_apos' argument 4 names different: declaration 'i_am_rf' definition 'ret_i_am_rf'.
hmmer-3.4/easel/miniapps/esl-alimask.c:751:41: style: Parameter 'useme_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:782:68: style: Parameter 'countme' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:826:42: style: Parameter 'gap_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:826:96: style: Parameter 'i_am_eligible' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:918:73: style: Parameter 'countme' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:999:206: style: Parameter 'i_am_eligible' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:1171:25: style: Parameter 'useme' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:1171:37: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimask.c:97:23: style: Variable 'nkept' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:98:26: style: Variable 'nkept_rf' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:100:22: style: Variable 'apos' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:355:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:413:18: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:464:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:482:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:527:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:575:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:579:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:583:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:587:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:591:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:595:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:1008:13: style: Variable 'ppidx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:1009:18: style: Variable 'ppcount' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimask.c:1010:16: style: Variable 'ppsum' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-alimerge.c:93:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:606:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslENOTFOUND [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:666:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:733:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1173:124: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1428:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1478:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1550:116: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1603:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1745:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_GA1 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1819:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:267:8: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
hmmer-3.4/easel/miniapps/esl-alimerge.c:268:3: note: Found duplicate branches for 'if' and 'else'.
hmmer-3.4/easel/miniapps/esl-alimerge.c:267:8: note: Found duplicate branches for 'if' and 'else'.
hmmer-3.4/easel/miniapps/esl-alimerge.c:574:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimerge.c:623:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1376:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1430:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1529:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1699:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alimerge.c:719:53: warning: Function 'validate_and_copy_msa_annotation' argument order different: declaration 'go, outfmt, mmsa, msaA, clen, nmsa, alen_merged, maxgap, maxmis, errbuf' definition 'go, outfmt, mmsa, msaA, nmsa, clen, alen_merged, maxgap, maxmis, errbuf' [funcArgOrderDifferent]
hmmer-3.4/easel/miniapps/esl-alimerge.c:56:65: note: Function 'validate_and_copy_msa_annotation' argument order different: declaration 'go, outfmt, mmsa, msaA, clen, nmsa, alen_merged, maxgap, maxmis, errbuf' definition 'go, outfmt, mmsa, msaA, nmsa, clen, alen_merged, maxgap, maxmis, errbuf'
hmmer-3.4/easel/miniapps/esl-alimerge.c:719:53: note: Function 'validate_and_copy_msa_annotation' argument order different: declaration 'go, outfmt, mmsa, msaA, clen, nmsa, alen_merged, maxgap, maxmis, errbuf' definition 'go, outfmt, mmsa, msaA, nmsa, clen, alen_merged, maxgap, maxmis, errbuf'
hmmer-3.4/easel/miniapps/esl-alimerge.c:1782:47: style:inconclusive: Function 'write_pfam_msa_gc' argument 3 names different: declaration 'maxwidth' definition 'margin'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-alimerge.c:63:59: note: Function 'write_pfam_msa_gc' argument 3 names different: declaration 'maxwidth' definition 'margin'.
hmmer-3.4/easel/miniapps/esl-alimerge.c:1782:47: note: Function 'write_pfam_msa_gc' argument 3 names different: declaration 'maxwidth' definition 'margin'.
hmmer-3.4/easel/miniapps/esl-alimerge.c:1405:44: style: Parameter 'src_str' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1405:92: style: Parameter 'ngapA' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1405:118: style: Parameter 'nmisA' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1468:102: style: Parameter 'ngapA' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1546:63: style: Parameter 'rf_str' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1546:77: style: Parameter 'other_str' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1782:38: style: Parameter 'msa' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alimerge.c:405:15: warning: Uninitialized variable: clen [uninitvar]
hmmer-3.4/easel/miniapps/esl-alimerge.c:280:19: note: Assuming condition is false
hmmer-3.4/easel/miniapps/esl-alimerge.c:405:15: note: Uninitialized variable: clen
hmmer-3.4/easel/miniapps/esl-alimerge.c:1407:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-alimerge.c:1470:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-alipid.c:35:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alirev.c:29:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:65:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:467:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:662:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:714:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:785:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:840:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:875:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:976:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslRNA [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:1029:61: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:1100:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:1148:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-alistat.c:841:11: warning: Either the condition '(ppidx=get_pp_idx(msa->abc,msa->pp[i][apos]))==-1' is redundant or the array 'seq_pp_ct[12]' is accessed at index -1, which is out of bounds. [negativeIndex]
hmmer-3.4/easel/miniapps/esl-alistat.c:840:54: note: Assuming that condition '(ppidx=get_pp_idx(msa->abc,msa->pp[i][apos]))==-1' is not redundant
hmmer-3.4/easel/miniapps/esl-alistat.c:841:11: note: Negative array index
hmmer-3.4/easel/miniapps/esl-alistat.c:336:5: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alistat.c:339:5: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alistat.c:343:5: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alistat.c:347:5: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alistat.c:352:5: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alistat.c:355:5: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alistat.c:359:5: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-alistat.c:549:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alistat.c:664:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alistat.c:945:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alistat.c:1075:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alistat.c:1131:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-alistat.c:962:89: style:inconclusive: Function 'dump_column_residue_counts' argument 4 names different: declaration 'do_ambig' definition 'no_ambig'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-alistat.c:28:90: note: Function 'dump_column_residue_counts' argument 4 names different: declaration 'do_ambig' definition 'no_ambig'.
hmmer-3.4/easel/miniapps/esl-alistat.c:962:89: note: Function 'dump_column_residue_counts' argument 4 names different: declaration 'do_ambig' definition 'no_ambig'.
hmmer-3.4/easel/miniapps/esl-alistat.c:605:136: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:605:151: style: Parameter 'msa_name' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:605:167: style: Parameter 'alifile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:675:132: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:675:147: style: Parameter 'msa_name' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:675:163: style: Parameter 'alifile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:722:121: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:722:136: style: Parameter 'msa_name' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:722:152: style: Parameter 'alifile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:730:8: style: Variable 'ppstring' can be declared as const array [constVariable]
hmmer-3.4/easel/miniapps/esl-alistat.c:794:81: style: Parameter 'alifile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:802:8: style: Variable 'ppstring' can be declared as const array [constVariable]
hmmer-3.4/easel/miniapps/esl-alistat.c:863:85: style: Parameter 'i_am_rf' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:863:100: style: Parameter 'alifile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:962:63: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:962:156: style: Parameter 'msa_name' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:962:172: style: Parameter 'alifile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:1016:71: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:1016:136: style: Parameter 'msa_name' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:1016:152: style: Parameter 'alifile' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-alistat.c:666:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alistat.c:952:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-alistat.c:607:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-alistat.c:872:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-compalign.c:96:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-compalign.c:550:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-compalign.c:491:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-compalign.c:569:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-compalign.c:540:68: style:inconclusive: Function 'read_mask_file' argument 4 names different: declaration 'ret_masklen' definition 'ret_mask_len'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-compalign.c:30:79: note: Function 'read_mask_file' argument 4 names different: declaration 'ret_masklen' definition 'ret_mask_len'.
hmmer-3.4/easel/miniapps/esl-compalign.c:540:68: note: Function 'read_mask_file' argument 4 names different: declaration 'ret_masklen' definition 'ret_mask_len'.
hmmer-3.4/easel/miniapps/esl-compalign.c:105:8: style: Variable 'ppchars' can be declared as const array [constVariable]
hmmer-3.4/easel/miniapps/esl-compalign.c:514:37: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-compalign.c:162:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-compalign.c:553:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-compstruct.c:69:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-compstruct.c:330:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-construct.c:73:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-construct.c:704:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSA_DIGITAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-construct.c:284:15: style: Array index 'i' is used before limits check. [arrayIndexThenCheck]
hmmer-3.4/easel/miniapps/esl-construct.c:347:15: style: Array index 'i' is used before limits check. [arrayIndexThenCheck]
hmmer-3.4/easel/miniapps/esl-construct.c:105:34: style: Variable 'nconflicts_total' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-construct.c:106:33: style: Variable 'nconflicts_list' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-construct.c:107:33: style: Variable 'noverlaps_total' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-construct.c:108:35: style: Variable 'nconsistent_total' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-construct.c:109:28: style: Variable 'nbps_total' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-construct.c:123:27: style: Variable 'namewidth' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-histplot.c:88:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mask.c:26:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mask.c:36:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mask.c:75:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:50:110: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEWRITE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:61:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ESL_SUBCMD [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:83:56: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ESL_SUBCMD [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:138:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:204:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:265:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:322:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:281:4: warning:inconclusive: If memory allocation fails, then there is a possible null pointer dereference: ct [nullPointerOutOfMemory]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:271:16: note: Assuming allocation function fails
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:271:16: note: Assignment 'ct=malloc(sizeof(int)*dchl->K)', assigned value is 0
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:281:4: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:285:17: warning:inconclusive: If memory allocation fails, then there is a possible null pointer dereference: ct [nullPointerOutOfMemory]
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:271:16: note: Assuming allocation function fails
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:271:16: note: Assignment 'ct=malloc(sizeof(int)*dchl->K)', assigned value is 0
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:285:17: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-mixdchlet.c:81:16: style: Variable 'banner' can be declared as const array [constVariable]
hmmer-3.4/easel/miniapps/esl-reformat.c:80:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-reformat.c:464:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-reformat.c:541:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-reformat.c:778:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-reformat.c:927:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-reformat.c:374:9: style: Obsolescent function 'ctime_r' called. It is recommended to use 'strftime' instead. [prohibitedctime_rCalled]
hmmer-3.4/easel/miniapps/esl-reformat.c:939:37: warning:inconclusive: Possible null pointer dereference: from [nullPointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:928:17: note: Assignment 'from=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-reformat.c:939:37: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-reformat.c:940:37: warning:inconclusive: Possible null pointer dereference: to [nullPointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:929:17: note: Assignment 'to=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-reformat.c:940:37: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-reformat.c:941:7: warning:inconclusive: Possible null pointer dereference: from [nullPointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:928:17: note: Assignment 'from=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-reformat.c:941:7: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-reformat.c:942:7: warning:inconclusive: Possible null pointer dereference: to [nullPointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:929:17: note: Assignment 'to=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-reformat.c:942:7: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-reformat.c:952:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-reformat.c:101:10: style: Variable 'rstring' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:458:27: style: Parameter 'oldsyms' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:461:9: style: Variable 'sptr' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:522:183: style: Parameter 'rename' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-reformat.c:955:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-reformat.c:925:10: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-selectn.c:32:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-selectn.c:42:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-selectn.c:66:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqrange.c:28:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqrange.c:38:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqrange.c:60:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqrange.c:161:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-seqrange.c:133:15: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-seqstat.c:53:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqstat.c:63:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqstat.c:77:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqstat.c:227:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslAMINO [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-seqstat.c:236:46: warning:inconclusive: Possible null pointer dereference: iid_bg [nullPointer]
hmmer-3.4/easel/miniapps/esl-seqstat.c:221:20: note: Assignment 'iid_bg=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-seqstat.c:236:46: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-seqstat.c:213:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-seqstat.c:252:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-seqstat.c:223:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-sfetch.c:31:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:43:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:99:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:224:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:304:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:375:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslENOTFOUND [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:434:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:474:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-sfetch.c:425:53: style:inconclusive: Function 'multifetch_subseq' argument 3 names different: declaration 'keyfile' definition 'gdffile'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-sfetch.c:90:65: note: Function 'multifetch_subseq' argument 3 names different: declaration 'keyfile' definition 'gdffile'.
hmmer-3.4/easel/miniapps/esl-sfetch.c:425:53: note: Function 'multifetch_subseq' argument 3 names different: declaration 'keyfile' definition 'gdffile'.
hmmer-3.4/easel/miniapps/esl-sfetch.c:256:17: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-shuffle.c:77:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-shuffle.c:89:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-shuffle.c:115:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-shuffle.c:186:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslUNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-shuffle.c:250:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-shuffle.c:347:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSQFILE_FASTA [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-shuffle.c:224:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-shuffle.c:332:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-shuffle.c:228:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-shuffle.c:190:17: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:604:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1411:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1532:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable text [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1650:80: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1681:110: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1772:58: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1822:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1839:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1860:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1883:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1966:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2028:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2092:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2198:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2221:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2421:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2441:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2708:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2788:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2880:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2935:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2980:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3017:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3056:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3121:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3218:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3369:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3881:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4016:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4135:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4262:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4437:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4659:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4836:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5007:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5183:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5350:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5425:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5541:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5568:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5643:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5942:67: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5968:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5991:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSMALLX1 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6021:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6092:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6104:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6140:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6240:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6552:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6891:66: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6972:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7095:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7180:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7221:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7373:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSMALLX1 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7441:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslSMALLX1 [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1031:6: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1120:6: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3020:27: style: Suspicious condition (assignment + comparison); Clarify expression with parentheses. [clarifyCondition]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5805:67: style: Condition 'ps->mask==NULL' is always false [knownConditionTrueFalse]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5805:119: style: Condition 'ps->mask==NULL' is always false [knownConditionTrueFalse]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5822:67: style: Condition 'ps->mask==NULL' is always false [knownConditionTrueFalse]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5822:119: style: Condition 'ps->mask==NULL' is always false [knownConditionTrueFalse]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2893:25: warning: Either the condition 'curstr!=NULL' is redundant or there is possible null pointer dereference: curstr. [nullPointerRedundantCheck]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2903:13: note: Assuming that condition 'curstr!=NULL' is not redundant
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2893:25: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5916:27: warning:inconclusive: Possible null pointer dereference: left [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5904:20: note: Assignment 'left=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5916:27: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5916:37: warning:inconclusive: Possible null pointer dereference: right [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5905:21: note: Assignment 'right=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5916:37: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6410:15: warning:inconclusive: Possible null pointer dereference: per_seq_ins_ct [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6397:36: note: Assignment 'per_seq_ins_ct=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6410:15: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6411:18: warning:inconclusive: Possible null pointer dereference: per_seq_ins_ct [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6397:36: note: Assignment 'per_seq_ins_ct=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6411:18: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6896:3: warning:inconclusive: Possible null pointer dereference: nseq_start_after_rfpos [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6872:33: note: Assignment 'nseq_start_after_rfpos=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6896:3: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6900:7: warning:inconclusive: Possible null pointer dereference: nseq_start_after_rfpos [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6872:33: note: Assignment 'nseq_start_after_rfpos=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6900:7: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7364:3: warning:inconclusive: Possible null pointer dereference: cseq_maj [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7347:30: note: Assignment 'cseq_maj=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7364:3: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7365:3: warning:inconclusive: Possible null pointer dereference: cseq_amb [nullPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7348:30: note: Assignment 'cseq_amb=NULL', assigned value is 0
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7365:3: note: Null pointer dereference
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2192:33: style: Floating-point cast causes loss of precision. [suspiciousFloatingPointCast]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6192:14: style: Variable 'ps->msa_ct' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6190:14: note: ps->msa_ct is assigned
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6192:14: note: ps->msa_ct is overwritten
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1319:3: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1396:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1622:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1655:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1704:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1746:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1802:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1867:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1945:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2015:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2094:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2200:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2423:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2680:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2906:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3103:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3308:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3850:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3998:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4090:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4226:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4402:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4624:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4805:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4974:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5138:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5325:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5400:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5478:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5543:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5602:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5875:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5922:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6199:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6369:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6441:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6728:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6806:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6936:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7067:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7166:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7415:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1597:35: style:inconclusive: Function 'create_onecell_colorlegend' argument 1 names different: declaration 'cmykA' definition 'col'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:459:64: note: Function 'create_onecell_colorlegend' argument 1 names different: declaration 'cmykA' definition 'col'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1597:35: note: Function 'create_onecell_colorlegend' argument 1 names different: declaration 'cmykA' definition 'col'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1715:43: style:inconclusive: Function 'create_scheme_colorlegend' argument 2 names different: declaration 'ncols' definition 'nbins'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:460:72: note: Function 'create_scheme_colorlegend' argument 2 names different: declaration 'ncols' definition 'nbins'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1715:43: note: Function 'create_scheme_colorlegend' argument 2 names different: declaration 'ncols' definition 'nbins'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4990:181: style:inconclusive: Function 'span_sspostscript' argument 10 names different: declaration 'zercov_idx' definition 'zerocov_idx'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:506:193: note: Function 'span_sspostscript' argument 10 names different: declaration 'zercov_idx' definition 'zerocov_idx'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4990:181: note: Function 'span_sspostscript' argument 10 names different: declaration 'zercov_idx' definition 'zerocov_idx'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6537:174: style:inconclusive: Function 'get_insert_info_from_ifile' argument 8 names different: declaration 'ret_soff_ct' definition 'ret_srfoff_ct'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:497:186: note: Function 'get_insert_info_from_ifile' argument 8 names different: declaration 'ret_soff_ct' definition 'ret_srfoff_ct'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6537:174: note: Function 'get_insert_info_from_ifile' argument 8 names different: declaration 'ret_soff_ct' definition 'ret_srfoff_ct'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6537:195: style:inconclusive: Function 'get_insert_info_from_ifile' argument 9 names different: declaration 'ret_eoff_ct' definition 'ret_erfoff_ct'. [funcArgNamesDifferent]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:497:205: note: Function 'get_insert_info_from_ifile' argument 9 names different: declaration 'ret_eoff_ct' definition 'ret_erfoff_ct'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6537:195: note: Function 'get_insert_info_from_ifile' argument 9 names different: declaration 'ret_eoff_ct' definition 'ret_erfoff_ct'.
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1715:57: style: Parameter 'limits' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1756:48: style: Parameter 'ps' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1812:49: style: Parameter 'ps' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1849:109: style: Parameter 'procstack' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2103:58: style: Parameter 'occl' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2384:53: style: Parameter 'tl' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4417:58: style: Parameter 'abc' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4417:119: style: Parameter 'span_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4819:112: style: Parameter 'nins_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4990:81: style: Parameter 'span_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6017:67: style: Parameter 'onecolor' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6031:54: style: Parameter 'colvec' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6102:48: style: Parameter 'ps' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6869:18: style: Parameter 'msa_rf2a_map' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6869:72: style: Parameter 'spos_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6869:86: style: Parameter 'epos_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6869:100: style: Parameter 'srfoff_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6869:116: style: Parameter 'erfoff_ct' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7281:14: style: Variable 'a' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7281:18: style: Variable 'b' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7316:35: style: Parameter 'useme' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5544:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:641:26: style: Variable 'tmp_Mb' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:642:32: style: Variable 'predicted_Mb' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1332:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1599:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1650:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1685:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1694:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1717:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1772:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1824:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1839:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1860:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1893:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:1905:13: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2009:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2028:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2110:17: style: Variable 'cur_width' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2105:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2391:17: style: Variable 'cur_width' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:2386:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3062:14: style: Variable 'ntok' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3337:17: style: Variable 'nextdel_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3338:13: style: Variable 'nwc_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3339:13: style: Variable 'ngu_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3340:13: style: Variable 'nnc_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3341:14: style: Variable 'ndgi_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3342:14: style: Variable 'nhgi_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3343:14: style: Variable 'ndge_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3344:14: style: Variable 'nhge_s' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3355:24: style: Variable 'noutline_min' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3356:24: style: Variable 'noutline_max' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3357:24: style: Variable 'noutline_bp_good' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3358:24: style: Variable 'noutline_bp_bad' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3363:14: style: Variable 'ngap_p' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:3364:21: style: Variable 'ngap_masked_p' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:4135:24: style: Variable 'seen_start' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5488:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5575:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:5897:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6240:18: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6249:18: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6252:18: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6393:19: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6562:48: style: Variable 'already_handled_special_spos' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6651:15: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6769:19: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:6871:7: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-ssdraw.c:7346:19: style: Unused variable: status [unusedVariable]
hmmer-3.4/easel/miniapps/esl-translate.c:22:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-translate.c:61:81: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEOF [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-translate.c:121:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDNA [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-translate.c:59:34: style: Condition 'windowsize%3==0' is always true [knownConditionTrueFalse]
hmmer-3.4/easel/miniapps/esl-translate.c:55:25: note: Assignment 'windowsize=4092', assigned value is 4092
hmmer-3.4/easel/miniapps/esl-translate.c:59:34: note: Condition 'windowsize%3==0' is always true
hmmer-3.4/easel/miniapps/esl-weight.c:43:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-weight.c:55:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/easel/miniapps/esl-weight.c:67:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_UNKNOWN [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:181:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:208:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:283:114: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:321:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslMSAFILE_STOCKHOLM [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:416:111: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:472:107: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:516:107: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:564:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:607:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:677:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslFAIL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:718:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:832:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:917:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDSQ_SENTINEL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:960:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDSQ_SENTINEL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:1006:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDSQ_SENTINEL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:1069:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDSQ_SENTINEL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:1110:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslDSQ_SENTINEL [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:1163:74: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:1250:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:1299:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:1352:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/create-profmark.c:244:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:244:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:245:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:245:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:246:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:246:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:247:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:247:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:249:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:249:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:250:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:250:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:251:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:251:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:252:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:252:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:253:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:253:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:255:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:255:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:256:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:256:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:257:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:257:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:258:3: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:258:3: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:260:8: warning:inconclusive: Possible null pointer dereference: cfg [nullPointer]
hmmer-3.4/profmark/create-profmark.c:239:20: note: Assignment 'cfg=NULL', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:260:8: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:1251:28: warning:inconclusive: If memory allocation fails, then there is a possible null pointer dereference: useme [nullPointerOutOfMemory]
hmmer-3.4/profmark/create-profmark.c:1245:27: note: Assuming allocation function fails
hmmer-3.4/profmark/create-profmark.c:1245:27: note: Assignment 'useme=malloc(sizeof(int)*msa->nseq)', assigned value is 0
hmmer-3.4/profmark/create-profmark.c:1251:28: note: Null pointer dereference
hmmer-3.4/profmark/create-profmark.c:381:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/profmark/create-profmark.c:576:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/profmark/create-profmark.c:617:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/profmark/create-profmark.c:1332:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/profmark/create-profmark.c:1344:17: style: Variable 'basename' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/profmark/create-profmark.c:1345:17: style: Variable 'msafile' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/profmark/create-profmark.c:1346:17: style: Variable 'dbfile' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/profmark/create-profmark.c:620:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/profmark/create-profmark.c:240:14: style: Unused variable: status [unusedVariable]
hmmer-3.4/profmark/create-profmark.c:561:25: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/profmark/create-profmark.c:562:25: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/profmark/create-profmark.c:563:25: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/profmark/create-profmark.c:596:8: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/profmark/create-profmark.c:1163:16: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/profmark/create-profmark.c:1255:15: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/profmark/rocplot.c:121:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/rocplot.c:131:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/rocplot.c:165:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/rocplot.c:274:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/rocplot.c:352:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/profmark/rocplot.c:361:7: error: Common realloc mistake: 'rp' nulled but not freed upon failure [memleakOnRealloc]
hmmer-3.4/profmark/rocplot.c:413:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/profmark/rocplot.c:340:54: style:inconclusive: Function 'parse_results' argument 3 names different: declaration 'modelkh' definition 'qkh'. [funcArgNamesDifferent]
hmmer-3.4/profmark/rocplot.c:105:68: note: Function 'parse_results' argument 3 names different: declaration 'modelkh' definition 'qkh'.
hmmer-3.4/profmark/rocplot.c:340:54: note: Function 'parse_results' argument 3 names different: declaration 'modelkh' definition 'qkh'.
hmmer-3.4/profmark/rocplot.c:438:36: style:inconclusive: Function 'make_plot' argument 2 names different: declaration 'nr' definition 'nresults'. [funcArgNamesDifferent]
hmmer-3.4/profmark/rocplot.c:110:50: note: Function 'make_plot' argument 2 names different: declaration 'nr' definition 'nresults'.
hmmer-3.4/profmark/rocplot.c:438:36: note: Function 'make_plot' argument 2 names different: declaration 'nr' definition 'nresults'.
hmmer-3.4/profmark/rocplot.c:303:45: style: Parameter 'queryp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/profmark/rocplot.c:303:69: style: Parameter 'seqp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/profmark/rocplot.c:490:40: style: Parameter 'plot' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/profmark/rocplot.c:506:60: style: Parameter 'plot' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/profmark/rocplot.c:397:10: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/hmmer.h:832:0: error: #error "No vector implementation enabled" [preprocessorErrorDirective]
hmmer-3.4/src/hmmer.h:832:2: error: #error "No vector implementation enabled" [preprocessorErrorDirective]
hmmer-3.4/src/heatmap.c:86:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/heatmap.c:48:38: style: Parameter 'D' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/heatmap.c:51:10: style: Variable 'cyan' can be declared as const array [constVariable]
hmmer-3.4/src/heatmap.c:53:10: style: Variable 'magenta' can be declared as const array [constVariable]
hmmer-3.4/src/heatmap.c:55:10: style: Variable 'yellow' can be declared as const array [constVariable]
hmmer-3.4/src/heatmap.c:57:10: style: Variable 'black' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/decoding.c:135:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslERANGE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/decoding.c:189:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslERANGE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/fwdback.c:99:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/fwdback.c:151:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/fwdback.c:210:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/fwdback.c:256:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/fwdback.c:288:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/fwdback.c:533:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/fwdback.c:733:7: style: Variable 'xBv' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/fwdback.c:642:11: note: xBv is assigned
hmmer-3.4/src/impl_neon/fwdback.c:733:7: note: xBv is overwritten
hmmer-3.4/src/impl_neon/fwdback.c:90:70: style:inconclusive: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/impl_neon.h:304:107: note: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_neon/fwdback.c:90:70: note: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_neon/fwdback.c:142:76: style:inconclusive: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/impl_neon.h:305:107: note: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_neon/fwdback.c:142:76: note: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_neon/fwdback.c:266:87: style:inconclusive: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/fwdback.c:46:118: note: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_neon/fwdback.c:266:87: note: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_neon/io.c:96:111: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEWRITE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/io.c:242:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/io.c:363:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/io.c:442:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/io.c:508:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/io.c:619:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/io.c:689:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/io.c:623:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_neon/io.c:618:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/io.c:623:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/io.c:624:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_neon/io.c:618:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/io.c:624:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/io.c:625:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_neon/io.c:618:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/io.c:625:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/io.c:627:13: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_neon/io.c:618:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/io.c:627:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/io.c:628:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_neon/io.c:618:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/io.c:628:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/io.c:632:7: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_neon/io.c:618:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/io.c:632:7: note: Null pointer dereference
hmmer-3.4/src/impl_neon/io.c:105:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:115:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:117:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:156:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:159:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:166:17: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:168:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:169:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:283:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:290:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:292:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:555:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:558:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:564:18: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:566:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:567:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_neon/io.c:585:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/io.c:637:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/io.c:614:29: style:inconclusive: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/impl_neon.h:317:49: note: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'.
hmmer-3.4/src/impl_neon/io.c:614:29: note: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'.
hmmer-3.4/src/impl_neon/io.c:86:54: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/io.c:595:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_neon/io.c:495:17: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_neon/io.c:619:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/io.c:619:7: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/msvfilter.c:96:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/msvfilter.c:310:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7_MMU [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/msvfilter.c:251:101: style:inconclusive: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/impl_neon.h:325:112: note: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'.
hmmer-3.4/src/impl_neon/msvfilter.c:251:101: note: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'.
hmmer-3.4/src/impl_neon/null2.c:59:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable float32x4_t [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/null2.c:217:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:70:36: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:232:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:275:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7X_NXCELLS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:290:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7X_NXCELLS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:328:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7X_M [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:351:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_MI [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:364:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_N [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:372:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_C [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:383:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_J [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:396:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:417:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_N [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/optacc.c:64:16: style: Variable 'xmx' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_neon/optacc.c:289:16: style: Variable 'tp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_neon/optacc.c:295:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/optacc.c:351:16: style: Variable 'tp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_neon/optacc.c:406:12: warning: Uninitialized variable: kmax [uninitvar]
hmmer-3.4/src/impl_neon/optacc.c:401:17: note: Assuming condition is false
hmmer-3.4/src/impl_neon/optacc.c:406:12: note: Uninitialized variable: kmax
hmmer-3.4/src/impl_neon/optacc.c:407:10: warning: Uninitialized variable: smax [uninitvar]
hmmer-3.4/src/impl_neon/optacc.c:401:17: note: Assuming condition is false
hmmer-3.4/src/impl_neon/optacc.c:407:10: note: Uninitialized variable: smax
hmmer-3.4/src/impl_neon/optacc.c:64:21: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/optacc.c:64:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:80:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable uint8x16_t [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:141:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:237:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:270:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:356:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:426:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:508:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:609:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_omx.c:65:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:65:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:66:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:66:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:67:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:67:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:68:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:68:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:69:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:69:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:70:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:70:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:73:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:73:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:74:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:74:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:74:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:74:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:75:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:75:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:76:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:76:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:77:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:77:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:78:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:78:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:78:28: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:78:28: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:78:51: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:78:51: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:80:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:80:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:80:56: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:80:56: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:80:79: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:80:79: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:81:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:81:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:81:49: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:81:49: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:82:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:82:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:82:49: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:82:49: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:83:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:83:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:83:49: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:83:49: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:85:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:85:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:85:66: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:85:66: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:86:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:86:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:86:66: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:86:66: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:87:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:87:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:87:66: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:87:66: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:90:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:90:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:90:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:90:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:90:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:90:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:91:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:91:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:91:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:91:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:91:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:91:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:92:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:92:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:92:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:92:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:92:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:92:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:95:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:95:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:96:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:96:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:96:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:96:41: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:97:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:97:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:97:57: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:97:57: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:99:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:99:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:100:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:100:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:101:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:101:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:102:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:102:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:391:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:385:20: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:391:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:407:30: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:385:20: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:407:30: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:410:53: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:385:20: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:410:53: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:464:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:458:19: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:464:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:481:29: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:458:19: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:481:29: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:484:53: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:458:19: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:484:53: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:556:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:548:21: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:556:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:571:29: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:548:21: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_omx.c:571:29: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_omx.c:109:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/p7_omx.c:210:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/p7_omx.c:428:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/p7_omx.c:510:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/p7_omx.c:611:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/p7_omx.c:233:16: style: Variable 'xmx' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_neon/p7_omx.c:350:26: style: Parameter 'fp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:350:38: style: Parameter 'ox' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_omx.c:382:15: style: Variable 'dp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_neon/p7_omx.c:455:14: style: Variable 'dp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_neon/p7_omx.c:545:16: style: Variable 'dp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_neon/p7_omx.c:211:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_neon/p7_omx.c:430:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_neon/p7_omx.c:512:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_neon/p7_omx.c:613:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_neon/p7_omx.c:62:12: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:143:11: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:232:21: style: Variable 'dp' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:233:21: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:233:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:388:15: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:461:14: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_neon/p7_omx.c:551:16: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_neon/p7_oprofile.c:75:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable uint8x16_t [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:163:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7_LOCAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:223:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable uint8x16_t [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:287:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable uint8x16_t [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:450:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:523:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:598:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslCONST_LOG2 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:759:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:783:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:842:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:942:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1031:55: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1080:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1104:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1141:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1172:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslCONST_LOG2 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1241:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1287:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1325:64: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable f32x4 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1383:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1447:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1570:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1689:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1716:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1760:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEMEM [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1816:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslFAIL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1910:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:1972:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7P_NTRANS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/p7_oprofile.c:60:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:60:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:61:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:61:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:62:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:62:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:63:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:63:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:64:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:64:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:65:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:65:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:66:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:66:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:67:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:67:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:68:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:68:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:69:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:69:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:70:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:70:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:71:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:71:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:72:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:72:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:75:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:75:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:76:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:76:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:77:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:77:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:78:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:78:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:79:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:79:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:80:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:80:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:82:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:82:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:83:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:83:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:84:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:84:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:85:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:85:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:88:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:88:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:88:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:88:54: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:89:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:89:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:89:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:89:54: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:90:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:90:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:90:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:90:54: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:91:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:91:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:91:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:91:54: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:92:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:92:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:92:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:92:54: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:93:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:93:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:93:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:93:54: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:97:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:97:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:97:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:97:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:98:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:98:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:98:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:98:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:99:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:99:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:99:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:99:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:100:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:100:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:100:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:100:18: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:102:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:102:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:103:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:103:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:104:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:104:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:107:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:107:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:108:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:108:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:109:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:109:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:110:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:110:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:111:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:111:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:112:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:112:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:114:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:114:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:115:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:115:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:116:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:116:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:117:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:117:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:119:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:119:37: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:120:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:120:37: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:121:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:121:37: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:273:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:273:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:274:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:274:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:275:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:275:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:276:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:276:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:277:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:277:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:278:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:278:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:279:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:279:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:280:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:280:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:281:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:281:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:282:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:282:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:283:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:283:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:284:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:284:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:287:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:287:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:288:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:288:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:289:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:289:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:290:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:290:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:291:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:291:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:292:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:292:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:294:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:294:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:295:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:295:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:296:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:296:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:297:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:297:13: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:300:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:300:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:300:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:300:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:301:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:301:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:301:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:301:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:302:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:302:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:302:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:302:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:303:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:303:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:303:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:303:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:304:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:304:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:304:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:304:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:305:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:305:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:305:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:305:55: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:308:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:308:10: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:309:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:309:10: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:310:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:310:10: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:311:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:311:10: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:315:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:315:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:315:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:315:19: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:316:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:316:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:316:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:316:19: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:317:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:317:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:317:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:317:19: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:318:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:318:5: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:318:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:318:19: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:320:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:320:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:321:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:321:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:322:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:322:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:325:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:325:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:326:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:326:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:327:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:327:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:328:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:328:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:329:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:329:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:330:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:330:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:332:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:332:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:333:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:333:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:334:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:334:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:335:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:335:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:337:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:337:37: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:338:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:338:37: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:339:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:339:37: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:406:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:403:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:406:10: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:408:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:403:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_neon/p7_oprofile.c:408:3: note: Null pointer dereference
hmmer-3.4/src/impl_neon/p7_oprofile.c:151:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/p7_oprofile.c:411:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_neon/p7_oprofile.c:48:24: style:inconclusive: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/impl_neon.h:269:44: note: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'.
hmmer-3.4/src/impl_neon/p7_oprofile.c:48:24: note: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'.
hmmer-3.4/src/impl_neon/p7_oprofile.c:255:31: style:inconclusive: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/impl_neon.h:273:51: note: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_neon/p7_oprofile.c:255:31: note: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_neon/p7_oprofile.c:399:38: style:inconclusive: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_neon/impl_neon.h:274:58: note: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_neon/p7_oprofile.c:399:38: note: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_neon/p7_oprofile.c:434:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:501:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:571:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:667:29: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:682:31: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:698:22: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_neon/p7_oprofile.c:50:16: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_neon/p7_oprofile.c:401:17: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_neon/p7_oprofile.c:592:13: style: Variable 'idx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:867:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslENORESULT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: note: i is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: note: i is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: note: rsc is assigned
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: note: rsc is overwritten
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:710:5: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:714:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:718:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:722:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:726:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:731:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:737:5: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:741:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:745:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:749:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:753:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:757:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:761:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:766:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:772:5: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:776:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:780:9: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/ssvfilter.c:785:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/stotrace.c:78:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/stotrace.c:211:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_S [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/stotrace.c:265:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_M [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/stotrace.c:135:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/stotrace.c:167:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/stotrace.c:199:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/stotrace.c:220:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/stotrace.c:233:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/stotrace.c:285:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_neon/vitfilter.c:102:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/vitfilter.c:328:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7_VMU [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_neon/vitfilter.c:117:8: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/vitfilter.c:348:8: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_neon/vitscore.c:86:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/decoding.c:135:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslERANGE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/decoding.c:189:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslERANGE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/fwdback.c:99:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/fwdback.c:141:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/fwdback.c:200:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/fwdback.c:246:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/fwdback.c:277:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/fwdback.c:489:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/fwdback.c:90:70: style:inconclusive: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/impl_sse.h:307:107: note: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_sse/fwdback.c:90:70: note: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_sse/fwdback.c:132:76: style:inconclusive: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/impl_sse.h:308:107: note: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_sse/fwdback.c:132:76: note: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_sse/fwdback.c:256:87: style:inconclusive: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/fwdback.c:46:118: note: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_sse/fwdback.c:256:87: note: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_sse/io.c:97:111: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEWRITE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/io.c:243:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/io.c:364:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/io.c:443:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/io.c:518:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/io.c:629:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/io.c:699:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/io.c:633:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_sse/io.c:628:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/io.c:633:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/io.c:634:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_sse/io.c:628:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/io.c:634:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/io.c:635:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_sse/io.c:628:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/io.c:635:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/io.c:637:13: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_sse/io.c:628:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/io.c:637:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/io.c:638:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_sse/io.c:628:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/io.c:638:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/io.c:642:7: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_sse/io.c:628:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/io.c:642:7: note: Null pointer dereference
hmmer-3.4/src/impl_sse/io.c:106:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:116:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:118:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:157:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:160:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:167:17: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:169:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:170:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:284:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:291:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:293:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:565:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:568:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:574:18: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:576:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:577:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_sse/io.c:595:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/io.c:647:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/io.c:624:29: style:inconclusive: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/impl_sse.h:320:49: note: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'.
hmmer-3.4/src/impl_sse/io.c:624:29: note: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'.
hmmer-3.4/src/impl_sse/io.c:87:54: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/io.c:605:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_sse/io.c:505:17: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_sse/io.c:629:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/io.c:629:7: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/msvfilter.c:96:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/msvfilter.c:312:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7_MMU [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/msvfilter.c:256:101: style:inconclusive: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/impl_sse.h:328:112: note: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'.
hmmer-3.4/src/impl_sse/msvfilter.c:256:101: note: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'.
hmmer-3.4/src/impl_sse/null2.c:60:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/null2.c:218:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:71:31: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:233:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:276:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7X_NXCELLS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:291:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7X_NXCELLS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:327:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7X_M [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:350:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_MI [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:363:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_N [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:371:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_C [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:382:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_J [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:395:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:416:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_N [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/optacc.c:65:11: style: Variable 'xmx' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_sse/optacc.c:290:11: style: Variable 'tp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_sse/optacc.c:295:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_sse/optacc.c:350:11: style: Variable 'tp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_sse/optacc.c:405:12: warning: Uninitialized variable: kmax [uninitvar]
hmmer-3.4/src/impl_sse/optacc.c:400:17: note: Assuming condition is false
hmmer-3.4/src/impl_sse/optacc.c:405:12: note: Uninitialized variable: kmax
hmmer-3.4/src/impl_sse/optacc.c:406:10: warning: Uninitialized variable: smax [uninitvar]
hmmer-3.4/src/impl_sse/optacc.c:400:17: note: Assuming condition is false
hmmer-3.4/src/impl_sse/optacc.c:406:10: note: Uninitialized variable: smax
hmmer-3.4/src/impl_sse/optacc.c:65:15: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/optacc.c:65:11: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:84:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:145:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:241:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:274:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:360:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:430:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:512:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:613:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_omx.c:69:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:69:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:70:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:70:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:71:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:71:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:72:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:72:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:73:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:73:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:74:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:74:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:77:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:77:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:78:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:78:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:78:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:78:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:79:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:79:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:80:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:80:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:81:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:81:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:82:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:82:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:82:28: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:82:28: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:82:51: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:82:51: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:84:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:84:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:84:52: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:84:52: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:84:75: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:84:75: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:85:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:85:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:85:45: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:85:45: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:86:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:86:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:86:45: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:86:45: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:87:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:87:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:87:45: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:87:45: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:89:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:89:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:89:62: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:89:62: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:90:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:90:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:90:62: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:90:62: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:91:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:91:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:91:62: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:91:62: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:94:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:94:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:94:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:94:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:94:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:94:55: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:95:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:95:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:95:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:95:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:95:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:95:55: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:96:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:96:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:96:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:96:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:96:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:96:55: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:99:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:99:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:100:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:100:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:100:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:100:41: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:101:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:101:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:101:57: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:101:57: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:103:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:103:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:104:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:104:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:105:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:105:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:106:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:106:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:395:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:389:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:395:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:411:30: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:389:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:411:30: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:414:53: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:389:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:414:53: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:468:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:462:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:468:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:485:29: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:462:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:485:29: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:488:53: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:462:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:488:53: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:560:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:552:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:560:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:575:29: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:552:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_omx.c:575:29: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_omx.c:113:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/p7_omx.c:214:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/p7_omx.c:432:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/p7_omx.c:514:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/p7_omx.c:615:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/p7_omx.c:237:16: style: Variable 'xmx' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_sse/p7_omx.c:354:26: style: Parameter 'fp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:354:38: style: Parameter 'ox' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_omx.c:386:12: style: Variable 'dp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_sse/p7_omx.c:459:12: style: Variable 'dp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_sse/p7_omx.c:549:11: style: Variable 'dp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_sse/p7_omx.c:215:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_sse/p7_omx.c:434:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_sse/p7_omx.c:516:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_sse/p7_omx.c:617:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_sse/p7_omx.c:66:12: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:147:11: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:236:21: style: Variable 'dp' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:237:21: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:237:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:392:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:465:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_sse/p7_omx.c:555:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_sse/p7_oprofile.c:76:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:164:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7_LOCAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:226:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:290:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable __m128i [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:454:49: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:527:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:602:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslCONST_LOG2 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:760:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:784:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:843:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:943:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1025:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1074:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1098:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1135:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1166:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslCONST_LOG2 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1235:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1281:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1326:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1377:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1440:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1563:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1682:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1709:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1753:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEMEM [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1809:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslFAIL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1903:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:1965:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7P_NTRANS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/p7_oprofile.c:61:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:61:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:62:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:62:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:63:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:63:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:64:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:64:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:65:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:65:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:66:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:66:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:67:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:67:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:68:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:68:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:69:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:69:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:70:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:70:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:71:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:71:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:72:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:72:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:73:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:73:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:76:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:76:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:77:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:77:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:78:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:78:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:79:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:79:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:80:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:80:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:81:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:81:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:83:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:83:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:84:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:84:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:85:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:85:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:86:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:86:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:89:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:89:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:89:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:89:50: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:90:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:90:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:90:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:90:50: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:91:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:91:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:91:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:91:50: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:92:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:92:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:92:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:92:50: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:93:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:93:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:93:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:93:50: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:94:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:94:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:94:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:94:50: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:98:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:98:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:98:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:98:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:99:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:99:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:99:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:99:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:100:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:100:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:100:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:100:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:101:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:101:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:101:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:101:18: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:103:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:103:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:104:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:104:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:105:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:105:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:108:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:108:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:109:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:109:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:110:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:110:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:111:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:111:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:112:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:112:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:113:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:113:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:115:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:115:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:116:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:116:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:117:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:117:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:118:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:118:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:120:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:120:37: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:121:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:121:37: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:122:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:122:37: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:276:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:276:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:277:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:277:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:278:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:278:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:279:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:279:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:280:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:280:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:281:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:281:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:282:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:282:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:283:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:283:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:284:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:284:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:285:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:285:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:286:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:286:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:287:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:287:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:290:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:290:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:291:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:291:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:292:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:292:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:293:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:293:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:294:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:294:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:295:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:295:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:297:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:297:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:298:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:298:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:299:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:299:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:300:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:300:13: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:303:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:303:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:303:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:303:51: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:304:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:304:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:304:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:304:51: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:305:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:305:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:305:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:305:51: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:306:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:306:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:306:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:306:51: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:307:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:307:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:307:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:307:51: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:308:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:308:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:308:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:308:51: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:311:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:311:10: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:312:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:312:10: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:313:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:313:10: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:314:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:314:10: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:318:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:318:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:318:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:318:19: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:319:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:319:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:319:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:319:19: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:320:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:320:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:320:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:320:19: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:321:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:321:5: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:321:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:321:19: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:323:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:323:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:324:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:324:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:325:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:325:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:328:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:328:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:329:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:329:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:330:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:330:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:331:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:331:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:332:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:332:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:333:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:333:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:335:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:335:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:336:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:336:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:337:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:337:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:338:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:338:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:340:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:340:37: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:341:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:341:37: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:342:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:342:37: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:409:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:406:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:409:10: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:411:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:406:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_sse/p7_oprofile.c:411:3: note: Null pointer dereference
hmmer-3.4/src/impl_sse/p7_oprofile.c:152:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/p7_oprofile.c:415:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_sse/p7_oprofile.c:49:24: style:inconclusive: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/impl_sse.h:272:44: note: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'.
hmmer-3.4/src/impl_sse/p7_oprofile.c:49:24: note: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'.
hmmer-3.4/src/impl_sse/p7_oprofile.c:258:31: style:inconclusive: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/impl_sse.h:276:51: note: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_sse/p7_oprofile.c:258:31: note: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_sse/p7_oprofile.c:402:38: style:inconclusive: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_sse/impl_sse.h:277:58: note: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_sse/p7_oprofile.c:402:38: note: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_sse/p7_oprofile.c:438:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:505:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:575:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:667:29: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:683:31: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:699:22: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_sse/p7_oprofile.c:51:16: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_sse/p7_oprofile.c:404:17: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_sse/p7_oprofile.c:596:13: style: Variable 'idx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:885:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslENORESULT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: note: i is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: note: i is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: note: rsc is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: note: rsc is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: note: i is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: note: i is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: note: rsc is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: note: rsc is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: note: i is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: note: i is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: note: rsc is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: note: rsc is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: note: i is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: note: i is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: note: rsc is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: note: rsc is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: note: i is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: note: i is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: note: rsc is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: note: rsc is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: style: Variable 'i' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: note: i is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: note: i is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: style: Variable 'rsc' is reassigned a value before the old one has been used. [redundantAssignment]
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: note: rsc is assigned
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: note: rsc is overwritten
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:718:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:724:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:730:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:736:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:742:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: style: Variable 'rsc' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/ssvfilter.c:748:3: style: Variable 'i' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/stotrace.c:79:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/stotrace.c:210:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_S [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/stotrace.c:264:51: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_M [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/stotrace.c:135:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_sse/stotrace.c:166:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_sse/stotrace.c:198:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_sse/stotrace.c:219:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_sse/stotrace.c:232:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_sse/stotrace.c:284:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_sse/vitfilter.c:103:70: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/vitfilter.c:334:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7_VMU [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_sse/vitfilter.c:119:8: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/vitfilter.c:355:8: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_sse/vitscore.c:88:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/decoding.c:77:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/decoding.c:192:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslERANGE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/fwdback.c:100:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/fwdback.c:142:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/fwdback.c:201:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/fwdback.c:247:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/fwdback.c:259:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/fwdback.c:471:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/fwdback.c:91:70: style:inconclusive: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/impl_vmx.h:299:107: note: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_vmx/fwdback.c:91:70: note: Function 'p7_Forward' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_vmx/fwdback.c:133:76: style:inconclusive: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/impl_vmx.h:300:107: note: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_vmx/fwdback.c:133:76: note: Function 'p7_ForwardParser' argument 4 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_vmx/fwdback.c:257:87: style:inconclusive: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/fwdback.c:47:118: note: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_vmx/fwdback.c:257:87: note: Function 'forward_engine' argument 5 names different: declaration 'fwd' definition 'ox'.
hmmer-3.4/src/impl_vmx/fwdback.c:282:9: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/io.c:102:113: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEWRITE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/io.c:245:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/io.c:362:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/io.c:439:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/io.c:506:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/io.c:617:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/io.c:687:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEFORMAT [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/io.c:621:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_vmx/io.c:616:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/io.c:621:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/io.c:622:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_vmx/io.c:616:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/io.c:622:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/io.c:623:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_vmx/io.c:616:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/io.c:623:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/io.c:625:13: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_vmx/io.c:616:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/io.c:625:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/io.c:626:3: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_vmx/io.c:616:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/io.c:626:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/io.c:630:7: warning:inconclusive: Possible null pointer dereference: block [nullPointer]
hmmer-3.4/src/impl_vmx/io.c:616:24: note: Assignment 'block=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/io.c:630:7: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/io.c:111:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:118:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:120:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:159:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:162:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:169:17: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:171:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:172:14: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:285:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:290:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:292:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:553:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:556:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:562:18: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:564:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:565:15: portability:inconclusive: Casting from float * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
hmmer-3.4/src/impl_vmx/io.c:582:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/io.c:635:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/io.c:612:29: style:inconclusive: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/impl_vmx.h:312:49: note: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'.
hmmer-3.4/src/impl_vmx/io.c:612:29: note: Function 'p7_oprofile_CreateBlock' argument 1 names different: declaration 'size' definition 'count'.
hmmer-3.4/src/impl_vmx/io.c:93:54: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/io.c:592:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_vmx/io.c:438:16: style: Variable 'size' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/io.c:446:12: style: Variable 'size' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/io.c:493:17: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_vmx/io.c:617:14: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/io.c:617:7: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/msvfilter.c:77:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/msvfilter.c:252:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/msvfilter.c:248:101: style:inconclusive: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/impl_vmx.h:317:112: note: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'.
hmmer-3.4/src/impl_vmx/msvfilter.c:248:101: note: Function 'p7_SSVFilter_longtarget' argument 5 names different: declaration 'msvdata' definition 'ssvdata'.
hmmer-3.4/src/impl_vmx/null2.c:55:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/null2.c:149:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:61:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:237:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:280:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7X_NXCELLS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:294:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:331:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:361:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:374:28: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_N [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:382:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_C [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:393:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_J [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:404:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:427:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7O_N [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/optacc.c:66:11: style: Variable 'xmx' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_vmx/optacc.c:300:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_vmx/optacc.c:416:12: warning: Uninitialized variable: kmax [uninitvar]
hmmer-3.4/src/impl_vmx/optacc.c:411:17: note: Assuming condition is false
hmmer-3.4/src/impl_vmx/optacc.c:416:12: note: Uninitialized variable: kmax
hmmer-3.4/src/impl_vmx/optacc.c:417:10: warning: Uninitialized variable: smax [uninitvar]
hmmer-3.4/src/impl_vmx/optacc.c:411:17: note: Assuming condition is false
hmmer-3.4/src/impl_vmx/optacc.c:417:10: note: Uninitialized variable: smax
hmmer-3.4/src/impl_vmx/optacc.c:66:15: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/optacc.c:66:11: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:86:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:148:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FALSE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:244:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:294:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable TRUE [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:380:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:406:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:479:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:569:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_omx.c:70:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:70:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:71:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:71:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:72:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:72:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:73:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:73:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:74:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:74:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:75:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:75:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:78:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:78:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:79:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:79:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:79:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:79:18: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:80:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:80:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:81:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:81:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:82:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:82:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:83:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:83:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:83:28: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:83:28: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:83:51: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:83:51: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:86:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:86:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:86:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:86:58: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:86:81: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:86:81: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:87:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:87:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:87:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:87:58: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:88:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:88:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:88:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:88:58: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:89:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:89:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:89:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:89:58: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:92:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:92:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:92:72: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:92:72: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:93:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:93:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:93:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:93:41: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:94:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:94:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:94:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:94:41: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:97:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:97:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:97:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:97:18: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:97:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:97:55: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:98:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:98:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:98:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:98:18: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:98:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:98:55: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:99:5: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:99:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:99:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:99:18: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:99:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:99:55: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:102:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:102:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:103:13: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:103:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:103:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:103:41: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:104:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:104:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:104:54: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:104:54: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:106:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:106:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:107:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:107:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:108:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:108:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:109:3: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:109:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:415:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:409:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:415:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:431:30: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:409:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:431:30: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:434:53: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:409:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:434:53: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:488:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:482:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:488:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:505:29: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:482:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:505:29: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:508:53: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:482:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:508:53: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:580:3: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:572:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:580:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:595:29: warning:inconclusive: Possible null pointer dereference: v [nullPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:572:17: note: Assignment 'v=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_omx.c:595:29: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_omx.c:116:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/p7_omx.c:217:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/p7_omx.c:452:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/p7_omx.c:534:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/p7_omx.c:635:1: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/p7_omx.c:240:16: style: Variable 'xmx' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:374:26: style: Parameter 'fp' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:374:38: style: Parameter 'ox' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_omx.c:218:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_vmx/p7_omx.c:454:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_vmx/p7_omx.c:536:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_vmx/p7_omx.c:637:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/impl_vmx/p7_omx.c:67:12: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:150:11: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:239:21: style: Variable 'dp' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:240:21: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:240:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:412:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:485:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_vmx/p7_omx.c:575:12: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:77:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:162:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7_LOCAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:215:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:273:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:431:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:493:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:567:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslCONST_LOG2 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:707:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:764:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:866:39: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:940:54: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:995:59: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1019:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1056:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1087:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslCONST_LOG2 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1157:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1205:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1250:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1301:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1363:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1488:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1609:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1636:52: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1680:62: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEMEM [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1737:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslFAIL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1831:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslINFINITY [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:1893:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7P_NTRANS [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:62:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:62:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:63:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:63:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:64:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:64:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:65:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:65:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:66:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:66:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:67:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:67:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:68:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:68:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:69:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:69:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:70:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:70:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:71:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:71:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:72:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:72:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:77:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:77:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:78:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:78:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:79:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:79:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:80:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:80:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:81:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:81:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:83:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:83:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:84:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:84:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:85:13: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:85:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:88:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:88:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:88:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:88:63: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:89:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:89:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:89:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:89:63: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:90:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:90:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:90:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:90:63: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:91:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:91:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:91:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:91:63: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:92:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:92:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:92:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:92:63: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:97:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:97:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:97:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:97:18: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:98:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:98:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:98:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:98:18: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:99:5: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:99:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:99:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:99:18: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:101:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:101:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:102:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:102:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:103:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:103:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:106:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:106:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:107:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:107:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:108:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:108:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:109:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:109:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:110:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:110:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:111:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:111:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:113:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:113:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:114:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:114:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:115:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:115:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:116:3: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:116:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:118:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:118:37: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:119:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:119:37: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:120:37: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:120:37: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:259:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:259:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:260:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:260:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:261:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:261:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:262:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:262:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:263:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:263:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:264:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:264:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:265:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:265:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:266:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:266:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:267:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:267:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:268:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:268:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:273:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:273:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:274:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:274:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:275:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:275:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:276:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:276:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:277:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:277:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:279:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:279:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:280:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:280:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:281:13: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:281:13: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:284:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:284:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:284:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:284:64: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:285:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:285:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:285:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:285:64: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:286:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:286:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:286:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:286:64: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:287:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:287:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:287:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:287:64: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:288:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:288:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:288:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:288:64: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:291:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:291:10: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:292:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:292:10: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:293:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:293:10: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:297:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:297:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:297:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:297:19: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:298:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:298:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:298:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:298:19: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:299:5: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:299:5: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:299:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:299:19: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:301:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:301:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:302:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:302:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:303:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:303:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:306:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:306:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:307:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:307:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:308:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:308:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:309:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:309:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:310:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:310:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:311:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:311:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:313:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:313:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:314:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:314:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:315:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:315:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:316:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:316:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:318:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:318:37: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:319:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:319:37: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:320:37: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:320:37: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:387:10: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:384:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:387:10: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:389:3: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:384:24: note: Assignment 'om2=NULL', assigned value is 0
hmmer-3.4/src/impl_vmx/p7_oprofile.c:389:3: note: Null pointer dereference
hmmer-3.4/src/impl_vmx/p7_oprofile.c:150:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:393:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:51:24: style:inconclusive: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/impl_vmx.h:265:44: note: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'.
hmmer-3.4/src/impl_vmx/p7_oprofile.c:51:24: note: Function 'p7_oprofile_Create' argument 1 names different: declaration 'M' definition 'allocM'.
hmmer-3.4/src/impl_vmx/p7_oprofile.c:242:31: style:inconclusive: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/impl_vmx.h:269:51: note: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_vmx/p7_oprofile.c:242:31: note: Function 'p7_oprofile_Copy' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_vmx/p7_oprofile.c:380:38: style:inconclusive: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'. [funcArgNamesDifferent]
hmmer-3.4/src/impl_vmx/impl_vmx.h:270:58: note: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_vmx/p7_oprofile.c:380:38: note: Function 'p7_oprofile_Clone' argument 1 names different: declaration 'om' definition 'om1'.
hmmer-3.4/src/impl_vmx/p7_oprofile.c:416:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:471:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:541:72: style: Parameter 'fwd_emissions' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:642:29: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:660:31: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:676:22: style: Parameter 'om' can be declared as pointer to const [constParameterPointer]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:53:16: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:382:17: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/impl_vmx/p7_oprofile.c:561:13: style: Variable 'idx' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/stotrace.c:80:33: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslEINVAL [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/stotrace.c:131:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/stotrace.c:167:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/stotrace.c:201:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/stotrace.c:221:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable p7T_S [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/stotrace.c:264:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/stotrace.c:137:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_vmx/stotrace.c:172:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_vmx/stotrace.c:207:11: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_vmx/stotrace.c:230:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_vmx/stotrace.c:243:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_vmx/stotrace.c:295:9: style: Variable 'state' can be declared as const array [constVariable]
hmmer-3.4/src/impl_vmx/vitfilter.c:88:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/vitfilter.c:295:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/vitfilter.c:123:8: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/vitfilter.c:354:8: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/impl_vmx/vitscore.c:72:3: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable vector [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/impl_vmx/vitscore.c:98:8: style: Variable 'xE' is assigned a value that is never used. [unreadVariable]
hmmer-3.4/src/p7_gbands.c:46:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/p7_gbands.c:71:79: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/p7_gbands.c:103:79: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/p7_gbands.c:137:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/p7_gbands.c:149:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/p7_gbands.c:163:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable eslOK [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/p7_gbands.c:221:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable PRId64 [valueFlowBailoutIncompleteVar]
hmmer-3.4/src/p7_gbands.c:17:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:17:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:18:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:18:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:19:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:19:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:20:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:20:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:21:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:21:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:22:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:22:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:23:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:23:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:26:13: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:26:13: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:27:13: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:27:13: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:28:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:28:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:29:3: warning:inconclusive: Possible null pointer dereference: bnd [nullPointer]
hmmer-3.4/src/p7_gbands.c:11:30: note: Assignment 'bnd=NULL', assigned value is 0
hmmer-3.4/src/p7_gbands.c:29:3: note: Null pointer dereference
hmmer-3.4/src/p7_gbands.c:33:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/p7_gbands.c:151:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/p7_gbands.c:165:2: style: Label 'ERROR' is not used. [unusedLabel]
hmmer-3.4/src/p7_gbands.c:199:8: style: Variable 'bnd_ip' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/p7_gbands.c:200:8: style: Variable 'bnd_kp' can be declared as pointer to const [constVariablePointer]
hmmer-3.4/src/p7_gbands.c:152:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/p7_gbands.c:166:10: error: Uninitialized variable: status [uninitvar]
hmmer-3.4/src/p7_gbands.c:14:14: style: Unused variable: status [unusedVariable]
hmmer-3.4/src/p7_gbands.c:145:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/src/p7_gbands.c:159:7: style: Variable 'status' is not assigned a value. [unassignedVariable]
hmmer-3.4/easel/esl_sq.c:271:7: warning: Null pointer dereference: src [ctunullpointer]
hmmer-3.4/easel/esl_sqio_ascii.c:1567:18: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ascii.c:1549:18: note: Calling function esl_sq_Copy, 1st argument is null
hmmer-3.4/easel/esl_sq.c:271:7: note: Dereferencing argument src that is null
hmmer-3.4/easel/esl_sq.c:447:3: warning: Null pointer dereference: sq [ctunullpointer]
hmmer-3.4/easel/esl_sqio_ascii.c:1520:22: note: Assuming that condition 'tmpsq!=NULL' is not redundant
hmmer-3.4/easel/esl_sqio_ascii.c:1515:23: note: Calling function esl_sq_Reuse, 1st argument is null
hmmer-3.4/easel/esl_sq.c:447:3: note: Dereferencing argument sq that is null
hmmer-3.4/easel/esl_ssi.c:72:24: warning: Null pointer dereference: filename [ctunullpointer]
hmmer-3.4/easel/esl_msafile2.c:251:15: note: Assuming that condition 'ssifile!=NULL' is not redundant
hmmer-3.4/easel/esl_msafile2.c:248:15: note: Calling function esl_ssi_Open, 1st argument is null
hmmer-3.4/easel/esl_ssi.c:72:24: note: Dereferencing argument filename that is null
diff:
head hmmer-3.4/easel/easel.c:2240:9: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/easel/esl_exponential.c:441:42: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
     hmmer-3.4/easel/esl_exponential.c:431:0: note: Assignment 'sa=0.', assigned value is 0.0
     hmmer-3.4/easel/esl_exponential.c:432:23: note: Assuming condition is false
     hmmer-3.4/easel/esl_exponential.c:441:42: note: Invalid argument
head hmmer-3.4/easel/miniapps/esl-ssdraw.c:5805:119: style: Condition 'ps->mask==NULL' is always false [knownConditionTrueFalse]
head hmmer-3.4/easel/miniapps/esl-ssdraw.c:5822:119: style: Condition 'ps->mask==NULL' is always false [knownConditionTrueFalse]
head hmmer-3.4/src/hmmer.h:832:2: error: #error "No vector implementation enabled" [preprocessorErrorDirective]
head hmmer-3.4/src/impl_neon/io.c:619:7: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_neon/optacc.c:64:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_neon/p7_omx.c:233:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_neon/p7_omx.c:74:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:74:18: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:78:28: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:78:28: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:78:51: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:78:51: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:80:56: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:80:56: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:80:79: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:80:79: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:81:49: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:81:49: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:82:49: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:82:49: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:83:49: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:83:49: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:85:66: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:85:66: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:86:66: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:86:66: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:87:66: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:87:66: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:90:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:90:18: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:90:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:90:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:91:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:91:18: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:91:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:91:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:92:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:92:18: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:92:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:92:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:96:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:96:41: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_omx.c:97:57: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_neon/p7_omx.c:60:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_omx.c:97:57: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:100:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:100:18: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:300:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:300:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:301:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:301:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:302:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:302:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:303:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:303:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:304:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:304:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:305:55: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:305:55: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:315:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:315:19: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:316:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:316:19: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:317:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:317:19: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:318:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:267:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:318:19: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:88:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:88:54: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:89:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:89:54: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:90:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:90:54: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:91:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:91:54: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:92:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:92:54: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:93:54: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:93:54: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:97:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:97:18: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:98:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:98:18: note: Null pointer dereference
head hmmer-3.4/src/impl_neon/p7_oprofile.c:99:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_neon/p7_oprofile.c:51:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_neon/p7_oprofile.c:99:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/io.c:629:7: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_sse/optacc.c:65:11: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_sse/p7_omx.c:100:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:100:41: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:101:57: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:101:57: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:237:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_sse/p7_omx.c:78:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:78:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:82:28: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:82:28: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:82:51: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:82:51: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:84:52: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:84:52: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:84:75: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:84:75: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:85:45: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:85:45: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:86:45: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:86:45: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:87:45: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:87:45: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:89:62: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:89:62: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:90:62: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:90:62: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:91:62: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:91:62: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:94:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:94:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:94:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:94:55: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:95:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:95:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:95:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:95:55: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:96:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:96:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_omx.c:96:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_sse/p7_omx.c:64:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_omx.c:96:55: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:100:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:100:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:101:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:101:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:303:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:303:51: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:304:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:304:51: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:305:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:305:51: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:306:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:306:51: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:307:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:307:51: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:308:51: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:308:51: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:318:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:318:19: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:319:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:319:19: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:320:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:320:19: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:321:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:270:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:321:19: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:89:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:89:50: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:90:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:90:50: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:91:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:91:50: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:92:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:92:50: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:93:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:93:50: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:94:50: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:94:50: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:98:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:98:18: note: Null pointer dereference
head hmmer-3.4/src/impl_sse/p7_oprofile.c:99:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_sse/p7_oprofile.c:52:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_sse/p7_oprofile.c:99:18: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/io.c:617:7: style: Variable 'status' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_vmx/optacc.c:66:11: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_vmx/p7_omx.c:103:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:103:41: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:104:54: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:104:54: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:240:16: style: Variable 'xmx' is assigned a value that is never used. [unreadVariable]
head hmmer-3.4/src/impl_vmx/p7_omx.c:79:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:79:18: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:83:28: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:83:28: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:83:51: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:83:51: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:86:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:86:58: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:86:81: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:86:81: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:87:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:87:58: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:88:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:88:58: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:89:58: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:89:58: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:92:72: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:92:72: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:93:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:93:41: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:94:41: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:94:41: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:97:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:97:18: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:97:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:97:55: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:98:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:98:18: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:98:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:98:55: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:99:18: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:99:18: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_omx.c:99:55: warning:inconclusive: Possible null pointer dereference: ox [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_omx.c:65:21: note: Assignment 'ox=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_omx.c:99:55: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:284:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:284:64: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:285:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:285:64: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:286:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:286:64: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:287:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:287:64: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:288:64: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:288:64: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:297:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:297:19: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:298:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:298:19: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:299:19: warning:inconclusive: Possible null pointer dereference: om2 [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:253:24: note: Assignment 'om2=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:299:19: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:88:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:88:63: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:89:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:89:63: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:90:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:90:63: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:91:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:91:63: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:92:63: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:92:63: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:97:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:97:18: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:98:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:98:18: note: Null pointer dereference
head hmmer-3.4/src/impl_vmx/p7_oprofile.c:99:18: warning:inconclusive: Possible null pointer dereference: om [nullPointer]
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:54:22: note: Assignment 'om=NULL', assigned value is 0
     hmmer-3.4/src/impl_vmx/p7_oprofile.c:99:18: note: Null pointer dereference


DONE