2026-05-01 17:03
ftp://ftp.de.debian.org/debian/pool/main/e/ea-utils/ea-utils_1.1.2+dfsg.orig.tar.xz
cppcheck-options: --library=posix --library=gnu --library=bsd --library=zlib  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j6
platform: Linux-7.0.3+deb14-amd64-x86_64-with-glibc2.42
python: 3.13.12
client-version: 1.4.0
compiler: g++ (Debian 15.2.0-17) 15.2.0
cppcheck: head 2.20.0
head-info: e5c4a734 (2026-05-01 11:10:43 +0200)
count: 332 339
elapsed-time: 0.6 0.5
head-timing-info:

old-timing-info:

head results:
ea-utils.1.1.2-686/bam_aux.c:5:1: error: There is an unknown macro here somewhere. Configuration is required. If KHASH_MAP_INIT_STR is a macro then please configure it. [unknownMacro]
ea-utils.1.1.2-686/bam_reheader.c:42:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_reheader.c:28:41: warning:inconclusive: If memory allocation fails, then there is a possible null pointer dereference: buf [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bam_reheader.c:16:14: note: Assuming allocation function fails
ea-utils.1.1.2-686/bam_reheader.c:16:14: note: Assignment 'buf=malloc(0x10000)', assigned value is 0
ea-utils.1.1.2-686/bam_reheader.c:28:41: note: Null pointer dereference
ea-utils.1.1.2-686/bam_reheader.c:12:16: style: Variable 'old' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_reheader.c:39:16: style: Variable 'h' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_reheader.c:17:6: style: Variable 'old' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/bam_cat.c:83:75: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_cat.c:166:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optarg [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_sort.c:57:1: error: There is an unknown macro here somewhere. Configuration is required. If KSORT_INIT is a macro then please configure it. [unknownMacro]
ea-utils.1.1.2-686/bam.c:23:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_CBACK [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:60:41: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bam_header_t [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:66:38: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bam_header_t [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:92:7: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable errno [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:197:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_CORE_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:227:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_CORE_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:265:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_OFDEC [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:342:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_OFDEC [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:388:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_FUNMAP [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:37:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable data [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:81:9: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_CIGAR_MASK [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:171:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_DEF_MASK [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:186:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:209:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bam_pileup1_t [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:249:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:305:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_FUNMAP [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:346:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable bam_plbuf_t [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:404:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable maxcnt [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:58:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable s [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:74:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable faidx_t [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:141:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable s [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:161:35: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable faidx_t [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:183:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable s [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:198:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:281:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:309:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable h [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:375:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/faidx.c:415:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable s [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_md.c:32:37: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kstring_t [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_md.c:149:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_CMATCH [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_md.c:194:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable kpa_par_def [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_md.c:331:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optarg [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:107:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:120:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:142:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:160:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:204:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_MAX_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:222:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_MAX_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:320:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_ERR_HEADER [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:403:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_MAX_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:431:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_MAX_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:497:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_ERR_IO [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:516:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:535:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_ERR_IO [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:545:32: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:555:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:580:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_ERR_IO [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:617:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BGZF_ERR_MISUSE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_cat.c:160:19: style: Variable 'h' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/fastq-lib.h:85:38: error: Code 'line& l' is invalid C code. [syntaxError]
ea-utils.1.1.2-686/fastq-lib.cpp:41:27: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/fastq-lib.cpp:136:25: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/fastq-lib.cpp:306:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bgzf.c:142:9: warning: Assert statement calls a function which may have desired side effects: 'compressBound'. [assertWithSideEffect]
ea-utils.1.1.2-686/bgzf.c:160:9: warning: Assert statement calls a function which may have desired side effects: 'compressBound'. [assertWithSideEffect]
ea-utils.1.1.2-686/bgzf.c:313:45: style: Condition 'load_block_from_cache(fp,block_address)' is always false [knownConditionTrueFalse]
ea-utils.1.1.2-686/bgzf.c:313:45: note: Calling function 'load_block_from_cache' returns 0
ea-utils.1.1.2-686/bgzf.c:313:45: note: Condition 'load_block_from_cache(fp,block_address)' is always false
ea-utils.1.1.2-686/bgzf.c:585:39: error: Used file that is not opened. [useClosedFile]
ea-utils.1.1.2-686/bgzf.c:585:39: error: Resource handle 'fp' freed twice. [doubleFree]
ea-utils.1.1.2-686/bgzf.c:585:22: note: Resource handle 'fp' freed twice.
ea-utils.1.1.2-686/bgzf.c:585:39: note: Resource handle 'fp' freed twice.
ea-utils.1.1.2-686/bgzf.c:108:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:107:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:107:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:108:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:109:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:107:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:107:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:109:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:110:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:107:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:107:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:110:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:121:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:121:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:122:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:122:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:123:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:123:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:124:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:124:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:125:6: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:120:13: note: Assignment 'fp=calloc(1,sizeof(BGZF))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:125:6: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:426:2: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:426:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:427:2: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:427:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:428:2: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:428:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:428:19: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:428:19: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:429:2: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:429:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:429:19: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:429:19: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:430:18: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:430:18: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:431:3: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:431:3: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:432:2: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:432:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:432:19: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:432:19: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:433:2: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:433:2: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:433:17: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:433:17: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:434:18: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:434:18: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:435:3: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:435:3: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:436:3: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:436:3: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:437:3: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:437:3: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:438:3: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:438:3: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:444:18: warning: If memory allocation fails, then there is a possible null pointer dereference: mt [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bgzf.c:425:13: note: Assignment 'mt=calloc(1,sizeof(struct mtaux_t))', assigned value is 0
ea-utils.1.1.2-686/bgzf.c:444:18: note: Null pointer dereference
ea-utils.1.1.2-686/bgzf.c:302:30: style: Parameter 'fp' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/bgzf.c:303:40: style: Parameter 'fp' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/bgzf.c:304:31: style: Parameter 'fp' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/bgzf.c:504:11: style: Variable 'mt' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bgzf.c:601:17: style: Variable 'magic' can be declared as const array [constVariable]
ea-utils.1.1.2-686/bgzf.c:409:6: style: Variable 'tmp' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/bgzf.c:578:9: style: Variable 'count' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/faidx.c:93:6: error: Common realloc mistake: 'name' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/faidx.c:53:6: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:53:6: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:53:16: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:53:16: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:57:2: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:57:2: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:57:12: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:57:12: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:58:16: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:58:16: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:58:27: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:58:27: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:58:37: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:58:37: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:60:11: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:60:11: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:61:4: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:172:20: note: Calling function 'fai_insert_index', 1st argument 'fai' value is 0
ea-utils.1.1.2-686/faidx.c:61:4: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:75:2: warning: If memory allocation fails, then there is a possible null pointer dereference: idx [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:74:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:74:8: note: Assignment 'idx=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:75:2: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:162:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fai [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:161:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:161:8: note: Assignment 'fai=(faidx_t*)calloc(1,sizeof(faidx_t))', assigned value is 0
ea-utils.1.1.2-686/faidx.c:162:2: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:164:28: warning: If memory allocation fails, then there is a possible null pointer dereference: buf [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:163:21: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:163:8: note: Assignment 'buf=(char*)calloc(0x10000,1)', assigned value is 0
ea-utils.1.1.2-686/faidx.c:164:28: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:319:2: warning: If memory allocation fails, then there is a possible null pointer dereference: s [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:315:19: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:315:6: note: Assignment 's=(char*)malloc(l+1)', assigned value is 0
ea-utils.1.1.2-686/faidx.c:319:2: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:321:35: warning: If memory allocation fails, then there is a possible null pointer dereference: s [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:315:19: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:315:6: note: Assignment 's=(char*)malloc(l+1)', assigned value is 0
ea-utils.1.1.2-686/faidx.c:321:35: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:367:2: warning: If memory allocation fails, then there is a possible null pointer dereference: s [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:363:19: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:363:6: note: Assignment 's=(char*)malloc(end-beg+2)', assigned value is 0
ea-utils.1.1.2-686/faidx.c:367:2: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:430:2: warning: If memory allocation fails, then there is a possible null pointer dereference: seq [nullPointerOutOfMemory]
ea-utils.1.1.2-686/faidx.c:426:21: note: Assuming allocation function fails
ea-utils.1.1.2-686/faidx.c:426:8: note: Assignment 'seq=(char*)malloc(p_end_i-p_beg_i+2)', assigned value is 0
ea-utils.1.1.2-686/faidx.c:430:2: note: Null pointer dereference
ea-utils.1.1.2-686/faidx.c:351:7: style: Variable 'beg' is reassigned a value before the old one has been used. [redundantAssignment]
ea-utils.1.1.2-686/faidx.c:312:6: note: beg is assigned
ea-utils.1.1.2-686/faidx.c:351:7: note: beg is overwritten
ea-utils.1.1.2-686/faidx.c:353:7: style: Variable 'end' is reassigned a value before the old one has been used. [redundantAssignment]
ea-utils.1.1.2-686/faidx.c:312:12: note: end is assigned
ea-utils.1.1.2-686/faidx.c:353:7: note: end is overwritten
ea-utils.1.1.2-686/fastq-mcf.c:88:1: error: Code 'classadjustment{' is invalid C code. [syntaxError]
ea-utils.1.1.2-686/faidx.c:309:13: warning:inconclusive: Found suspicious operator '*', result is not used. [constStatement]
ea-utils.1.1.2-686/gcModel.c:28:1: error: Code 'using namespace std' is invalid C code. [syntaxError]
ea-utils.1.1.2-686/fastq-lib.cpp:43:15: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:53:14: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:56:13: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:104:23: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:118:23: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:186:26: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:187:27: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:189:26: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:190:27: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:274:18: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:299:15: style: C-style pointer casting [cstyleCast]
ea-utils.1.1.2-686/fastq-lib.cpp:99:26: style:inconclusive: Function 'gzopen' argument 1 names different: declaration 'in' definition 'f'. [funcArgNamesDifferent]
ea-utils.1.1.2-686/fastq-lib.h:90:26: note: Function 'gzopen' argument 1 names different: declaration 'in' definition 'f'.
ea-utils.1.1.2-686/fastq-lib.cpp:99:26: note: Function 'gzopen' argument 1 names different: declaration 'in' definition 'f'.
ea-utils.1.1.2-686/fastq-lib.cpp:99:41: style:inconclusive: Function 'gzopen' argument 2 names different: declaration 'mode' definition 'm'. [funcArgNamesDifferent]
ea-utils.1.1.2-686/fastq-lib.h:90:42: note: Function 'gzopen' argument 2 names different: declaration 'mode' definition 'm'.
ea-utils.1.1.2-686/fastq-lib.cpp:99:41: note: Function 'gzopen' argument 2 names different: declaration 'mode' definition 'm'.
ea-utils.1.1.2-686/fastq-lib.cpp:184:25: style:inconclusive: Function 'revcomp' argument 1 names different: declaration 'dest' definition 'd'. [funcArgNamesDifferent]
ea-utils.1.1.2-686/fastq-lib.h:111:25: note: Function 'revcomp' argument 1 names different: declaration 'dest' definition 'd'.
ea-utils.1.1.2-686/fastq-lib.cpp:184:25: note: Function 'revcomp' argument 1 names different: declaration 'dest' definition 'd'.
ea-utils.1.1.2-686/fastq-lib.cpp:184:39: style:inconclusive: Function 'revcomp' argument 2 names different: declaration 'src' definition 's'. [funcArgNamesDifferent]
ea-utils.1.1.2-686/fastq-lib.h:111:42: note: Function 'revcomp' argument 2 names different: declaration 'src' definition 's'.
ea-utils.1.1.2-686/fastq-lib.cpp:184:39: note: Function 'revcomp' argument 2 names different: declaration 'src' definition 's'.
ea-utils.1.1.2-686/fastq-lib.cpp:221:25: style:inconclusive: Function 'free_fq' argument 1 names different: declaration 'fq' definition 'f'. [funcArgNamesDifferent]
ea-utils.1.1.2-686/fastq-lib.h:73:25: note: Function 'free_fq' argument 1 names different: declaration 'fq' definition 'f'.
ea-utils.1.1.2-686/fastq-lib.cpp:221:25: note: Function 'free_fq' argument 1 names different: declaration 'fq' definition 'f'.
ea-utils.1.1.2-686/fastq-lib.h:97:21: style: Parameter 'a' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/fastq-lib.h:97:30: style: Parameter 'b' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/fastq-lib.cpp:41:22: warning: Storing fgetc() return value in char variable and then comparing with EOF. [checkCastIntToCharAndBack]
ea-utils.1.1.2-686/fastq-lib.cpp:49:7: warning: Storing fgetc() return value in char variable and then comparing with EOF. [checkCastIntToCharAndBack]
ea-utils.1.1.2-686/knetfile.c:94:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable AF_UNSPEC [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:259:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:301:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable knetFile [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:331:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:379:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable knetFile [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:437:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:455:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:497:45: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable knetFile [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:507:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable KNF_TYPE_FTP [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:534:18: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable KNF_TYPE_LOCAL [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/knetfile.c:583:19: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable KNF_TYPE_LOCAL [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam.c:128:2: warning:inconclusive: The buffer 'buf' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
ea-utils.1.1.2-686/bam.c:316:51: portability: Casting between unsigned char * and float * which have an incompatible binary data representation. [invalidPointerCast]
ea-utils.1.1.2-686/bam.c:317:52: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
ea-utils.1.1.2-686/bam.c:333:55: portability: Casting between unsigned char * and float * which have an incompatible binary data representation. [invalidPointerCast]
ea-utils.1.1.2-686/bam.c:327:25: style: Same expression on both sides of '||'. [duplicateExpression]
ea-utils.1.1.2-686/bam.c:258:29: style: Variable 't' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam.c:354:8: style: Variable 's' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/knetfile.c:302:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:302:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:303:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:303:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:306:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:306:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:307:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:307:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:309:10: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:309:10: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:310:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:310:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:311:10: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:311:10: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:312:5: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:312:5: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:313:13: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:313:13: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:314:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:301:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:314:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:380:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:380:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:381:10: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:381:10: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:382:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:382:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:383:11: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:383:11: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:399:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:399:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:400:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:400:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:400:16: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:400:16: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:401:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:379:13: note: Assignment 'fp=calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:401:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:484:3: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:483:25: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:483:8: note: Assignment 'fp=(knetFile*)calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:484:3: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:485:3: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:483:25: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:483:8: note: Assignment 'fp=(knetFile*)calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:485:3: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:486:3: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:483:25: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:483:8: note: Assignment 'fp=(knetFile*)calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:486:3: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:498:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:497:34: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:497:17: note: Assignment 'fp=(knetFile*)calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:498:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:499:2: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
ea-utils.1.1.2-686/knetfile.c:497:34: note: Assuming allocation function fails
ea-utils.1.1.2-686/knetfile.c:497:17: note: Assignment 'fp=(knetFile*)calloc(1,sizeof(knetFile))', assigned value is 0
ea-utils.1.1.2-686/knetfile.c:499:2: note: Null pointer dereference
ea-utils.1.1.2-686/knetfile.c:432:10: style: Local variable 'l' shadows outer variable [shadowVariable]
ea-utils.1.1.2-686/knetfile.c:407:11: note: Shadowed declaration
ea-utils.1.1.2-686/knetfile.c:432:10: note: Shadow variable
ea-utils.1.1.2-686/knetfile.c:242:8: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/knetfile.c:295:8: style: Variable 'p' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/knetfile.c:189:26: portability: 'buf' is of type 'void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
ea-utils.1.1.2-686/knetfile.c:520:29: portability: 'buf' is of type 'void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
ea-utils.1.1.2-686/phase.c:11:1: error: There is an unknown macro here somewhere. Configuration is required. If KSTREAM_INIT is a macro then please configure it. [unknownMacro]
ea-utils.1.1.2-686/padding.c:50:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable BAM_CMATCH [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/padding.c:82:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/padding.c:117:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/padding.c:173:13: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/padding.c:328:12: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/padding.c:393:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optarg [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/padding.c:460:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razip.c:30:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable O_WRONLY [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razip.c:62:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable optarg [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/bam_pileup.c:212:23: style: Condition 'resolve_cigar2(iter->plp+n_plp,iter->pos,&p->s)' is always true [knownConditionTrueFalse]
ea-utils.1.1.2-686/bam_pileup.c:212:23: note: Calling function 'resolve_cigar2' returns 1
ea-utils.1.1.2-686/bam_pileup.c:212:23: note: Condition 'resolve_cigar2(iter->plp+n_plp,iter->pos,&p->s)' is always true
ea-utils.1.1.2-686/bam_pileup.c:347:2: warning: If memory allocation fails, then there is a possible null pointer dereference: buf [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bam_pileup.c:346:14: note: Assuming allocation function fails
ea-utils.1.1.2-686/bam_pileup.c:346:14: note: Assignment 'buf=calloc(1,sizeof(bam_plbuf_t))', assigned value is 0
ea-utils.1.1.2-686/bam_pileup.c:347:2: note: Null pointer dereference
ea-utils.1.1.2-686/bam_pileup.c:348:2: warning: If memory allocation fails, then there is a possible null pointer dereference: buf [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bam_pileup.c:346:14: note: Assuming allocation function fails
ea-utils.1.1.2-686/bam_pileup.c:346:14: note: Assignment 'buf=calloc(1,sizeof(bam_plbuf_t))', assigned value is 0
ea-utils.1.1.2-686/bam_pileup.c:348:2: note: Null pointer dereference
ea-utils.1.1.2-686/bam_pileup.c:349:2: warning: If memory allocation fails, then there is a possible null pointer dereference: buf [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bam_pileup.c:346:14: note: Assuming allocation function fails
ea-utils.1.1.2-686/bam_pileup.c:346:14: note: Assignment 'buf=calloc(1,sizeof(bam_plbuf_t))', assigned value is 0
ea-utils.1.1.2-686/bam_pileup.c:349:2: note: Null pointer dereference
ea-utils.1.1.2-686/bam_pileup.c:73:15: style: Variable 'c' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_pileup.c:74:12: style: Variable 'cigar' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_pileup.c:75:17: style: Variable 'is_head' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/bam_pileup.c:79:11: style: Variable 'is_head' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/razf.c:85:95: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BIN_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:101:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BIN_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:119:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable ZBlockIndex [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:159:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RAZF [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:203:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BUFFER_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:223:34: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BUFFER_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:256:30: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BUFFER_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:271:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BUFFER_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:293:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BLOCK_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:358:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RAZF [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:508:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable O_RDONLY [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:568:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FILE_TYPE_PLAIN [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:654:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BUFFER_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:689:44: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable RZ_BUFFER_SIZE [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:717:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FILE_TYPE_PLAIN [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razf.c:746:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable FILE_TYPE_PLAIN [valueFlowBailoutIncompleteVar]
ea-utils.1.1.2-686/razip.c:30:18: warning: If memory allocation fails, then there is a possible null pointer dereference: fn [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razip.c:118:18: note: Assuming allocation function fails
ea-utils.1.1.2-686/razip.c:118:18: note: Assignment 'name=strdup(argv[optind])', assigned value is 0
ea-utils.1.1.2-686/razip.c:120:24: note: Calling function 'write_open', 1st argument 'name' value is 0
ea-utils.1.1.2-686/razip.c:30:18: note: Null pointer dereference
ea-utils.1.1.2-686/razip.c:83:12: warning: If memory allocation fails, then there is a possible null pointer dereference: name [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razip.c:82:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/razip.c:82:24: note: Assignment 'name=malloc(sizeof(strlen(argv[optind])+5))', assigned value is 0
ea-utils.1.1.2-686/razip.c:83:12: note: Null pointer dereference
ea-utils.1.1.2-686/razip.c:84:12: warning: If memory allocation fails, then there is a possible null pointer dereference: name [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razip.c:82:24: note: Assuming allocation function fails
ea-utils.1.1.2-686/razip.c:82:24: note: Assignment 'name=malloc(sizeof(strlen(argv[optind])+5))', assigned value is 0
ea-utils.1.1.2-686/razip.c:84:12: note: Null pointer dereference
ea-utils.1.1.2-686/razip.c:119:5: warning: If memory allocation fails, then there is a possible null pointer dereference: name [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razip.c:118:18: note: Assuming allocation function fails
ea-utils.1.1.2-686/razip.c:118:18: note: Assignment 'name=strdup(argv[optind])', assigned value is 0
ea-utils.1.1.2-686/razip.c:119:5: note: Null pointer dereference
ea-utils.1.1.2-686/razip.c:119:17: warning: If memory allocation fails, then there is a possible null pointer dereference: name [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razip.c:118:18: note: Assuming allocation function fails
ea-utils.1.1.2-686/razip.c:118:18: note: Assignment 'name=strdup(argv[optind])', assigned value is 0
ea-utils.1.1.2-686/razip.c:119:17: note: Null pointer dereference
ea-utils.1.1.2-686/razip.c:82:53: warning: Found calculation inside sizeof(). [sizeofCalculation]
ea-utils.1.1.2-686/razf.c:170:2: warning: Return value of function deflateInit2() is not used. [ignoredReturnValue]
ea-utils.1.1.2-686/razf.c:186:2: warning: Return value of function deflateSetHeader() is not used. [ignoredReturnValue]
ea-utils.1.1.2-686/razf.c:197:3: warning: Return value of function deflate() is not used. [ignoredReturnValue]
ea-utils.1.1.2-686/razf.c:230:3: warning: Return value of function deflate() is not used. [ignoredReturnValue]
ea-utils.1.1.2-686/razf.c:254:3: warning: Return value of function deflate() is not used. [ignoredReturnValue]
ea-utils.1.1.2-686/bam_md.c:40:37: style: Condition 'c2!=15' is always true [knownConditionTrueFalse]
ea-utils.1.1.2-686/bam_md.c:76:38: style: Condition 'c2!=15' is always true [knownConditionTrueFalse]
ea-utils.1.1.2-686/bam_md.c:156:36: style: Condition 'qual[z]>=13' is always true [knownConditionTrueFalse]
ea-utils.1.1.2-686/bam_md.c:154:41: note: Assuming that condition 'qual[z]>=13' is not redundant
ea-utils.1.1.2-686/bam_md.c:156:36: note: Condition 'qual[z]>=13' is always true
ea-utils.1.1.2-686/bam_md.c:249:10: warning: If memory allocation fails, then there is a possible null pointer dereference: bq [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bam_md.c:248:14: note: Assuming allocation function fails
ea-utils.1.1.2-686/bam_md.c:248:14: note: Assignment 'bq=calloc(c->l_qseq+1,1)', assigned value is 0
ea-utils.1.1.2-686/bam_md.c:249:10: note: Null pointer dereference
ea-utils.1.1.2-686/bam_md.c:251:35: warning: If memory allocation fails, then there is a possible null pointer dereference: s [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bam_md.c:250:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bam_md.c:250:13: note: Assignment 's=calloc(c->l_qseq,1)', assigned value is 0
ea-utils.1.1.2-686/bam_md.c:251:35: note: Null pointer dereference
ea-utils.1.1.2-686/bam_md.c:255:4: warning: If memory allocation fails, then there is a possible null pointer dereference: r [nullPointerOutOfMemory]
ea-utils.1.1.2-686/bam_md.c:252:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/bam_md.c:252:13: note: Assignment 'r=calloc(xe-xb,1)', assigned value is 0
ea-utils.1.1.2-686/bam_md.c:254:15: note: Assuming condition is false
ea-utils.1.1.2-686/bam_md.c:255:4: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:160:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:160:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:164:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:164:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:166:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:166:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:167:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:167:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:168:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:168:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:169:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:169:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:170:15: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:170:15: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:171:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:171:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:172:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:172:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:172:26: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:172:26: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:173:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:173:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:174:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:174:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:175:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:175:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:176:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:176:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:177:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:177:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:178:17: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:178:17: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:179:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:179:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:181:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:181:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:182:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:182:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:183:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:183:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:184:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:184:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:184:21: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:184:21: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:185:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:185:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:186:19: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:186:19: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:186:31: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:186:31: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:187:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:187:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:187:18: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:159:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:159:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:187:18: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:359:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:359:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:366:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:366:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:368:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:368:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:369:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:369:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:370:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:370:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:371:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:371:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:371:12: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:371:12: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:375:11: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:375:11: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:375:24: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:375:24: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:377:24: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:377:24: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:388:2: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:378:9: note: Assuming condition is false
ea-utils.1.1.2-686/razf.c:388:2: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:389:21: warning: If memory allocation fails, then there is a possible null pointer dereference: rz [nullPointerOutOfMemory]
ea-utils.1.1.2-686/razf.c:358:13: note: Assuming allocation function fails
ea-utils.1.1.2-686/razf.c:358:13: note: Assignment 'rz=calloc(1,sizeof(RAZF))', assigned value is 0
ea-utils.1.1.2-686/razf.c:378:9: note: Assuming condition is false
ea-utils.1.1.2-686/razf.c:389:21: note: Null pointer dereference
ea-utils.1.1.2-686/razf.c:331:3: style: Variable '*extra_off' is assigned an expression that holds the same value. [redundantAssignment]
ea-utils.1.1.2-686/razf.c:325:13: note: *extra_off is assigned 'n+2' here.
ea-utils.1.1.2-686/razf.c:328:11: note: Assuming condition is false
ea-utils.1.1.2-686/razf.c:330:3: note: Compound assignment '+=', assigned value is symbolic=*extra_off
ea-utils.1.1.2-686/razf.c:331:3: note: Variable '*extra_off' is assigned an expression that holds the same value.
ea-utils.1.1.2-686/razf.c:76:8: style: Variable 'c' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/razf.c:316:43: style: Parameter 'data' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/razf.c:357:16: style: Variable 'c' can be declared as const array [constVariable]
ea-utils.1.1.2-686/razf.c:775:27: style: Parameter 'rz' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/razf.c:283:9: portability: 'data' is of type 'const void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
ea-utils.1.1.2-686/razf.c:297:8: portability: 'data' is of type 'const void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
ea-utils.1.1.2-686/razf.c:631:10: portability: 'data' is of type 'void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
ea-utils.1.1.2-686/razf.c:637:10: portability: 'data' is of type 'void *'. When using void pointers in calculations, the behaviour is undefined. [arithOperationsOnVoidPointer]
ea-utils.1.1.2-686/razf.c:46:13: style: struct member '_gz_header_s::xflags' is never used. [unusedStructMember]
ea-utils.1.1.2-686/razf.c:50:13: style: struct member '_gz_header_s::extra_max' is never used. [unusedStructMember]
ea-utils.1.1.2-686/razf.c:52:13: style: struct member '_gz_header_s::name_max' is never used. [unusedStructMember]
ea-utils.1.1.2-686/bam_md.c:246:44: style: Local variable 'bq' shadows outer variable [shadowVariable]
ea-utils.1.1.2-686/bam_md.c:195:11: note: Shadowed declaration
ea-utils.1.1.2-686/bam_md.c:246:44: note: Shadow variable
ea-utils.1.1.2-686/razf.c:54:13: style: struct member '_gz_header_s::comm_max' is never used. [unusedStructMember]
ea-utils.1.1.2-686/bam_md.c:26:12: style: Variable 'cigar' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_md.c:27:15: style: Variable 'c' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_md.c:138:35: style: Parameter 'ref' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/bam_md.c:141:12: style: Variable 'cigar' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_md.c:142:15: style: Variable 'c' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/bam_md.c:192:12: style: Variable 'cigar' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/razf.c:56:13: style: struct member '_gz_header_s::done' is never used. [unusedStructMember]
ea-utils.1.1.2-686/razf.c:631:10: style: Variable 'data' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/bam_md.c:146:24: style: Variable 'clip_l' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/bam_md.c:171:11: style: Variable 'clip_l' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/bam_md.c:175:11: style: Variable 'clip_l' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/kprobaln.c:230:66: style: Operator '|' with one operand equal to zero is redundant. [badBitmaskCheck]
ea-utils.1.1.2-686/kprobaln.c:93:3: warning: If memory allocation fails, then there is a possible null pointer dereference: f [nullPointerOutOfMemory]
ea-utils.1.1.2-686/kprobaln.c:90:12: note: Assuming allocation function fails
ea-utils.1.1.2-686/kprobaln.c:90:12: note: Assignment 'f=calloc(l_query+1,sizeof(void*))', assigned value is 0
ea-utils.1.1.2-686/kprobaln.c:93:3: note: Null pointer dereference
ea-utils.1.1.2-686/kprobaln.c:94:20: warning: If memory allocation fails, then there is a possible null pointer dereference: b [nullPointerOutOfMemory]
ea-utils.1.1.2-686/kprobaln.c:91:29: note: Assuming allocation function fails
ea-utils.1.1.2-686/kprobaln.c:91:29: note: Assignment 'b=calloc(l_query+1,sizeof(void*))', assigned value is 0
ea-utils.1.1.2-686/kprobaln.c:94:20: note: Null pointer dereference
ea-utils.1.1.2-686/kprobaln.c:102:32: warning: If memory allocation fails, then there is a possible null pointer dereference: _qual [nullPointerOutOfMemory]
ea-utils.1.1.2-686/kprobaln.c:98:16: note: Assuming allocation function fails
ea-utils.1.1.2-686/kprobaln.c:98:16: note: Assignment '_qual=calloc(l_query,sizeof(float))', assigned value is 0
ea-utils.1.1.2-686/kprobaln.c:102:32: note: Null pointer dereference
ea-utils.1.1.2-686/kprobaln.c:113:12: warning: If memory allocation fails, then there is a possible null pointer dereference: s [nullPointerOutOfMemory]
ea-utils.1.1.2-686/kprobaln.c:96:12: note: Assuming allocation function fails
ea-utils.1.1.2-686/kprobaln.c:96:12: note: Assignment 's=calloc(l_query+2,sizeof(double))', assigned value is 0
ea-utils.1.1.2-686/kprobaln.c:113:12: note: Null pointer dereference
ea-utils.1.1.2-686/kprobaln.c:125:3: warning: If memory allocation fails, then there is a possible null pointer dereference: s [nullPointerOutOfMemory]
ea-utils.1.1.2-686/kprobaln.c:96:12: note: Assuming allocation function fails
ea-utils.1.1.2-686/kprobaln.c:96:12: note: Assignment 's=calloc(l_query+2,sizeof(double))', assigned value is 0
ea-utils.1.1.2-686/kprobaln.c:125:3: note: Null pointer dereference
ea-utils.1.1.2-686/kprobaln.c:103:15: error: If memory allocation fails: overflow in pointer arithmetic, NULL pointer is subtracted. [nullPointerArithmeticOutOfMemory]
ea-utils.1.1.2-686/kprobaln.c:98:16: note: Assuming allocation function fails
ea-utils.1.1.2-686/kprobaln.c:98:16: note: Assignment '_qual=calloc(l_query,sizeof(float))', assigned value is 0
ea-utils.1.1.2-686/kprobaln.c:103:15: note: Null pointer subtraction
ea-utils.1.1.2-686/kprobaln.c:76:9: style: Variable 'qual' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/kprobaln.c:131:23: style: Variable 'fi1' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/kprobaln.c:188:23: style: Variable 'bi1' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/kprobaln.c:222:21: style: Variable 'fi' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/kprobaln.c:222:33: style: Variable 'bi' can be declared as pointer to const [constVariablePointer]
ea-utils.1.1.2-686/kprobaln.c:219:10: style: Variable 'is_diff' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/kprobaln.c:233:19: style: Variable 'sum' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/padding.c:195:4: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:220:5: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:222:5: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:224:6: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:233:12: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:238:6: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:242:4: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:244:5: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:247:6: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:249:5: error: Common realloc mistake: 'cigar2' nulled but not freed upon failure [memleakOnRealloc]
ea-utils.1.1.2-686/padding.c:367:10: warning: If memory allocation fails, then there is a possible null pointer dereference: newtext [nullPointerOutOfMemory]
ea-utils.1.1.2-686/padding.c:366:19: note: Assuming allocation function fails
ea-utils.1.1.2-686/padding.c:366:19: note: Assignment 'newtext=malloc(strlen(header->text)+1)', assigned value is 0
ea-utils.1.1.2-686/padding.c:367:10: note: Null pointer dereference
ea-utils.1.1.2-686/padding.c:370:27: warning: If memory allocation fails, then there is a possible null pointer dereference: newtext [nullPointerOutOfMemory]
ea-utils.1.1.2-686/padding.c:366:19: note: Assuming allocation function fails
ea-utils.1.1.2-686/padding.c:366:19: note: Assignment 'newtext=malloc(strlen(header->text)+1)', assigned value is 0
ea-utils.1.1.2-686/padding.c:370:27: note: Null pointer dereference
ea-utils.1.1.2-686/padding.c:12:55: style: Parameter 'cigar' can be declared as pointer to const [constParameterPointer]
ea-utils.1.1.2-686/padding.c:159:18: style: Variable 'n2' is assigned a value that is never used. [unreadVariable]
ea-utils.1.1.2-686/padding.c:321:26: style: Variable 'unpadded_len' is assigned a value that is never used. [unreadVariable]
diff:
2.20.0 ea-utils.1.1.2-686/bam_reheader.c:29:10: warning:inconclusive: If memory allocation fails, then there is a possible null pointer dereference: buf [nullPointerOutOfMemory]
     ea-utils.1.1.2-686/bam_reheader.c:16:14: note: Assuming allocation function fails
     ea-utils.1.1.2-686/bam_reheader.c:16:14: note: Assignment 'buf=malloc(0x10000)', assigned value is 0
     ea-utils.1.1.2-686/bam_reheader.c:29:10: note: Null pointer dereference
2.20.0 ea-utils.1.1.2-686/faidx.c:204:13: warning:inconclusive: If memory allocation fails, then there is a possible null pointer dereference: str [nullPointerOutOfMemory]
     ea-utils.1.1.2-686/faidx.c:194:21: note: Assuming allocation function fails
     ea-utils.1.1.2-686/faidx.c:194:8: note: Assignment 'str=(char*)calloc(strlen(fn)+5,1)', assigned value is 0
     ea-utils.1.1.2-686/faidx.c:197:9: note: Assuming condition is false
     ea-utils.1.1.2-686/faidx.c:204:13: note: Null pointer dereference
2.20.0 ea-utils.1.1.2-686/faidx.c:279:20: warning:inconclusive: If memory allocation fails, then there is a possible null pointer dereference: str [nullPointerOutOfMemory]
     ea-utils.1.1.2-686/faidx.c:263:21: note: Assuming allocation function fails
     ea-utils.1.1.2-686/faidx.c:263:8: note: Assignment 'str=(char*)calloc(strlen(fn)+5,1)', assigned value is 0
     ea-utils.1.1.2-686/faidx.c:279:20: note: Null pointer dereference
2.20.0 ea-utils.1.1.2-686/fastq-lib.cpp:114:23: warning: If memory allocation fails, then there is a possible null pointer dereference: tmp [nullPointerOutOfMemory]
     ea-utils.1.1.2-686/fastq-lib.cpp:104:37: note: Assuming allocation function fails
     ea-utils.1.1.2-686/fastq-lib.cpp:104:23: note: Assignment 'tmp=(char*)malloc(strlen(f)+100)', assigned value is 0
     ea-utils.1.1.2-686/fastq-lib.cpp:114:23: note: Null pointer dereference
2.20.0 ea-utils.1.1.2-686/fastq-lib.cpp:128:23: warning: If memory allocation fails, then there is a possible null pointer dereference: tmp [nullPointerOutOfMemory]
     ea-utils.1.1.2-686/fastq-lib.cpp:118:37: note: Assuming allocation function fails
     ea-utils.1.1.2-686/fastq-lib.cpp:118:23: note: Assignment 'tmp=(char*)malloc(strlen(f)+100)', assigned value is 0
     ea-utils.1.1.2-686/fastq-lib.cpp:128:23: note: Null pointer dereference
2.20.0 ea-utils.1.1.2-686/knetfile.c:413:22: error:inconclusive: If memory allocation fails: pointer addition with NULL pointer. [nullPointerArithmeticOutOfMemory]
     ea-utils.1.1.2-686/knetfile.c:411:14: note: Assuming allocation function fails
     ea-utils.1.1.2-686/knetfile.c:411:14: note: Assignment 'buf=calloc(0x10000,1)', assigned value is 0
     ea-utils.1.1.2-686/knetfile.c:413:22: note: Null pointer addition
2.20.0 ea-utils.1.1.2-686/knetfile.c:414:19: error:inconclusive: If memory allocation fails: pointer addition with NULL pointer. [nullPointerArithmeticOutOfMemory]
     ea-utils.1.1.2-686/knetfile.c:411:14: note: Assuming allocation function fails
     ea-utils.1.1.2-686/knetfile.c:411:14: note: Assignment 'buf=calloc(0x10000,1)', assigned value is 0
     ea-utils.1.1.2-686/knetfile.c:414:19: note: Null pointer addition
head ea-utils.1.1.2-686/razip.c:30:18: warning: If memory allocation fails, then there is a possible null pointer dereference: fn [nullPointerOutOfMemory]
     ea-utils.1.1.2-686/razip.c:118:18: note: Assuming allocation function fails
     ea-utils.1.1.2-686/razip.c:118:18: note: Assignment 'name=strdup(argv[optind])', assigned value is 0
     ea-utils.1.1.2-686/razip.c:120:24: note: Calling function 'write_open', 1st argument 'name' value is 0
     ea-utils.1.1.2-686/razip.c:30:18: note: Null pointer dereference
2.20.0 ea-utils.1.1.2-686/razip.c:30:18: warning: If memory allocation fails, then there is a possible null pointer dereference: fn [nullPointerOutOfMemory]
     ea-utils.1.1.2-686/razip.c:82:24: note: Assuming allocation function fails
     ea-utils.1.1.2-686/razip.c:82:24: note: Assignment 'name=malloc(sizeof(strlen(argv[optind])+5))', assigned value is 0
     ea-utils.1.1.2-686/razip.c:85:24: note: Calling function 'write_open', 1st argument 'name' value is 0
     ea-utils.1.1.2-686/razip.c:30:18: note: Null pointer dereference


DONE