2022-06-15 06:13
ftp://ftp.de.debian.org/debian/pool/main/c/concavity/concavity_0.1+dfsg.1.orig.tar.xz
cppcheck-options: --library=posix --library=gnu  --showtime=top5 --check-library --inconclusive --enable=style,information --template=daca2 -D__GNUC__ --platform=unix64 -rp=temp -j1
platform: Linux-5.4.0-117-generic-x86_64-with-glibc2.29
python: 3.8.10
client-version: 1.3.24
compiler: g++ (Ubuntu 10.3.0-1ubuntu1~20.04) 10.3.0
cppcheck: head 2.8
head-info: 176eefc (2022-06-14 23:08:17 +0200)
count: 406 397
elapsed-time: 47.3 58.1
head-timing-info:
 Tokenizer::simplifyTokens1: 13.9935s (avg. 0.126068s - 111 result(s))
 Tokenizer::simplifyTokens1::ValueFlow: 12.0322s (avg. 0.108398s - 111 result(s))
 Tokenizer::simplifyTokens1::createSymbolDatabase: 0.781501s (avg. 0.00704055s - 111 result(s))
 Tokenizer::createTokens: 0.286482s (avg. 0.00255788s - 112 result(s))
 Tokenizer::simplifyTokens1::setValueType: 0.199999s (avg. 0.00180179s - 111 result(s))
 Overall time: 28.6217s

old-timing-info:
 Tokenizer::simplifyTokens1: 17.3906s (avg. 0.156672s - 111 result(s))
 Tokenizer::simplifyTokens1::ValueFlow: 15.2791s (avg. 0.13765s - 111 result(s))
 Tokenizer::simplifyTokens1::createSymbolDatabase: 0.878111s (avg. 0.00791091s - 111 result(s))
 Tokenizer::createTokens: 0.305207s (avg. 0.00272506s - 112 result(s))
 Tokenizer::simplifyTokens1::setValueType: 0.215308s (avg. 0.00193971s - 111 result(s))
 Overall time: 35.4839s

head results:
concavity_distr/apps/concavity/pocket_extraction.C:890:53: style: Condition 'ncavities<max_cavities' is always false [knownConditionTrueFalse]
concavity_distr/apps/concavity/pocket_extraction.C:802:17: note: Assuming that condition 'ncavities<max_cavities' is not redundant
concavity_distr/apps/concavity/pocket_extraction.C:890:53: note: Condition 'ncavities<max_cavities' is always false
concavity_distr/apps/concavity/pocket_extraction.C:743:28: style: C-style pointer casting [cstyleCast]
concavity_distr/apps/concavity/pocket_extraction.C:819:32: style: C-style pointer casting [cstyleCast]
concavity_distr/apps/concavity/pocket_extraction.C:857:32: style: C-style pointer casting [cstyleCast]
concavity_distr/apps/concavity/pocket_extraction.C:975:35: style: C-style pointer casting [cstyleCast]
concavity_distr/apps/concavity/pocket_extraction.C:1056:31: style: Same expression on both sides of '||'. [duplicateExpression]
concavity_distr/apps/concavity/pocket_extraction.C:739:7: style: Local variable 'max_cavities' shadows outer variable [shadowVariable]
concavity_distr/apps/concavity/pocket_extraction.C:88:12: note: Shadowed declaration
concavity_distr/apps/concavity/pocket_extraction.C:739:7: note: Shadow variable
concavity_distr/apps/concavity/pocket_extraction.C:162:7: style: Variable 'grid_resolution' can be declared as const array [constVariable]
concavity_distr/pkgs/PDB/PDBBond.h:35:7: performance:inconclusive: Technically the member function 'PDBBond::NAtoms' can be static (but you may consider moving to unnamed namespace). [functionStatic]
concavity_distr/pkgs/PDB/PDBBond.h:114:1: note: Technically the member function 'PDBBond::NAtoms' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/PDB/PDBBond.h:35:7: note: Technically the member function 'PDBBond::NAtoms' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/PDB/PDBModel.h:10:3: style: Class 'PDBModel' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/PDB/PDBFile.h:10:3: style: Class 'PDBFile' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/PDB/PDBBond.h:133:20: style: Parameter 'atom' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/PDB/PDBAtom.C:39:7: style: Condition 'name' is always true [knownConditionTrueFalse]
concavity_distr/pkgs/PDB/PDBAtom.C:119:19: style:inconclusive: Function 'IsBonded' argument 1 names different: declaration 'atom' definition 'atom2'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBAtom.h:30:31: note: Function 'IsBonded' argument 1 names different: declaration 'atom' definition 'atom2'.
concavity_distr/pkgs/PDB/PDBAtom.C:119:19: note: Function 'IsBonded' argument 1 names different: declaration 'atom' definition 'atom2'.
concavity_distr/pkgs/PDB/PDBAtom.C:134:22: style:inconclusive: Function 'IsBonded' argument 1 names different: declaration 'residue' definition 'residue2'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBAtom.h:31:34: note: Function 'IsBonded' argument 1 names different: declaration 'residue' definition 'residue2'.
concavity_distr/pkgs/PDB/PDBAtom.C:134:22: note: Function 'IsBonded' argument 1 names different: declaration 'residue' definition 'residue2'.
concavity_distr/pkgs/PDB/PDBAtom.C:119:19: style: Parameter 'atom2' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/PDB/PDBAtom.C:134:22: style: Parameter 'residue2' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/PDB/PDBChain.C:92:11: warning: Either the condition 'namep' is redundant or there is possible null pointer dereference: buffer. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBChain.C:113:7: note: Assuming that condition 'namep' is not redundant
concavity_distr/pkgs/PDB/PDBChain.C:97:17: note: Assignment to 'namep=buffer'
concavity_distr/pkgs/PDB/PDBChain.C:92:11: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBChain.C:93:3: warning: Either the condition 'namep' is redundant or there is possible null pointer dereference: buffer. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBChain.C:113:7: note: Assuming that condition 'namep' is not redundant
concavity_distr/pkgs/PDB/PDBChain.C:97:17: note: Assignment to 'namep=buffer'
concavity_distr/pkgs/PDB/PDBChain.C:93:3: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBChain.C:100:11: warning: Either the condition 'namep' is redundant or there is possible null pointer dereference: bufferp. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBChain.C:113:7: note: Assuming that condition 'namep' is not redundant
concavity_distr/pkgs/PDB/PDBChain.C:97:17: note: Assignment to 'namep=buffer'
concavity_distr/pkgs/PDB/PDBChain.C:96:19: note: Assignment 'bufferp=buffer', assigned value is 0
concavity_distr/pkgs/PDB/PDBChain.C:100:11: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBChain.C:84:39: style:inconclusive: Function 'FindAny' argument 2 names different: declaration 'residue' definition 'r'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBChain.h:44:58: note: Function 'FindAny' argument 2 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBChain.C:84:39: note: Function 'FindAny' argument 2 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBChain.C:84:52: style:inconclusive: Function 'FindAny' argument 3 names different: declaration 'atom' definition 'a'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBChain.h:45:15: note: Function 'FindAny' argument 3 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBChain.C:84:52: note: Function 'FindAny' argument 3 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBChain.C:149:24: style:inconclusive: Function 'InsertCopy' argument 1 names different: declaration 'residue' definition 'r'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBChain.h:49:38: note: Function 'InsertCopy' argument 1 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBChain.C:149:24: note: Function 'InsertCopy' argument 1 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBDistance.C:23:22: style:inconclusive: Function 'PDBDistance' argument 1 names different: declaration 'atom' definition 'atom1'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBDistance.h:8:31: note: Function 'PDBDistance' argument 1 names different: declaration 'atom' definition 'atom1'.
concavity_distr/pkgs/PDB/PDBDistance.C:23:22: note: Function 'PDBDistance' argument 1 names different: declaration 'atom' definition 'atom1'.
concavity_distr/pkgs/PDB/PDBDistance.C:84:25: style:inconclusive: Function 'PDBDistance' argument 1 names different: declaration 'residue' definition 'residue1'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBDistance.h:13:34: note: Function 'PDBDistance' argument 1 names different: declaration 'residue' definition 'residue1'.
concavity_distr/pkgs/PDB/PDBDistance.C:84:25: note: Function 'PDBDistance' argument 1 names different: declaration 'residue' definition 'residue1'.
concavity_distr/pkgs/PDB/PDBFile.C:271:24: warning:inconclusive: The buffer 'resName' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
concavity_distr/pkgs/PDB/PDBFile.C:278:33: warning:inconclusive: The buffer 'occupancy_string' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
concavity_distr/pkgs/PDB/PDBFile.C:280:34: warning:inconclusive: The buffer 'tempFactor_string' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
concavity_distr/pkgs/PDB/PDBFile.C:282:28: warning:inconclusive: The buffer 'elementName' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
concavity_distr/pkgs/PDB/PDBFile.C:283:30: warning:inconclusive: The buffer 'charge_string' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
concavity_distr/pkgs/PDB/PDBFile.C:1592:28: warning:inconclusive: The buffer 'residue1_name' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
concavity_distr/pkgs/PDB/PDBFile.C:1600:28: warning:inconclusive: The buffer 'residue2_name' may not be null-terminated after the call to strncpy(). [terminateStrncpy]
concavity_distr/pkgs/PDB/PDBFile.C:487:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:489:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:491:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:493:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:495:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:497:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:499:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:504:25: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:519:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:521:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:523:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:527:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:530:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:533:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:536:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:539:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:655:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:657:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:659:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:661:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:663:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:665:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:667:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:672:25: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:689:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:691:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:693:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:697:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:700:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:703:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:706:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:709:23: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:788:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:793:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:798:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:810:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:815:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:820:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:825:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:830:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:925:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:930:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:935:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:940:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:945:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:950:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:955:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:960:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:1067:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:1072:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.C:1077:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/PDB/PDBFile.h:54:7: style:inconclusive: Technically the member function 'PDBFile::ReadASAFile' can be const. [functionConst]
concavity_distr/pkgs/PDB/PDBFile.C:1491:1: note: Technically the member function 'PDBFile::ReadASAFile' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:54:7: note: Technically the member function 'PDBFile::ReadASAFile' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:56:7: style:inconclusive: Technically the member function 'PDBFile::ReadConsurfFiles' can be const. [functionConst]
concavity_distr/pkgs/PDB/PDBFile.C:858:1: note: Technically the member function 'PDBFile::ReadConsurfFiles' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:56:7: note: Technically the member function 'PDBFile::ReadConsurfFiles' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:57:7: style:inconclusive: Technically the member function 'PDBFile::ReadHsspFiles' can be const. [functionConst]
concavity_distr/pkgs/PDB/PDBFile.C:1000:1: note: Technically the member function 'PDBFile::ReadHsspFiles' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:57:7: note: Technically the member function 'PDBFile::ReadHsspFiles' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:64:7: style:inconclusive: Technically the member function 'PDBFile::WriteJsdFiles' can be const. [functionConst]
concavity_distr/pkgs/PDB/PDBFile.C:1464:1: note: Technically the member function 'PDBFile::WriteJsdFiles' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:64:7: note: Technically the member function 'PDBFile::WriteJsdFiles' can be const.
concavity_distr/pkgs/PDB/PDBFile.h:67:8: performance:inconclusive: Technically the member function 'PDBFile::CreateBonds' can be static (but you may consider moving to unnamed namespace). [functionStatic]
concavity_distr/pkgs/PDB/PDBFile.C:1638:1: note: Technically the member function 'PDBFile::CreateBonds' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/PDB/PDBFile.h:67:8: note: Technically the member function 'PDBFile::CreateBonds' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/PDB/PDBFile.C:979:9: style: Condition 'aminoacid' is always true [knownConditionTrueFalse]
concavity_distr/pkgs/PDB/PDBFile.C:1107:9: style: Condition 'aminoacid' is always true [knownConditionTrueFalse]
concavity_distr/pkgs/PDB/PDBFile.C:1526:37: style: Condition 'asa_atom->Serial()>atom->Serial()' is always true [knownConditionTrueFalse]
concavity_distr/pkgs/PDB/PDBFile.C:1517:32: note: Assuming that condition 'asa_atom->Serial()==atom->Serial()' is not redundant
concavity_distr/pkgs/PDB/PDBFile.C:1526:37: note: Condition 'asa_atom->Serial()>atom->Serial()' is always true
concavity_distr/pkgs/PDB/PDBFile.C:481:9: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/PDB/PDBFile.C:591:10: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/PDB/PDBFile.C:648:9: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/PDB/PDBFile.C:1329:15: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/PDB/PDBFile.C:1393:17: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/PDB/PDBFile.C:139:11: warning: Either the condition 'strp' is redundant or there is possible null pointer dereference: strp. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBFile.C:167:9: note: Assuming that condition 'strp' is not redundant
concavity_distr/pkgs/PDB/PDBFile.C:139:11: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBFile.C:146:16: warning: Either the condition 'strp' is redundant or there is possible null pointer dereference: strp. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBFile.C:167:9: note: Assuming that condition 'strp' is not redundant
concavity_distr/pkgs/PDB/PDBFile.C:146:16: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBFile.C:147:4: warning: Either the condition 'strp' is redundant or there is possible null pointer dereference: strp. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBFile.C:167:9: note: Assuming that condition 'strp' is not redundant
concavity_distr/pkgs/PDB/PDBFile.C:147:4: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBFile.C:160:4: warning: Either the condition 'strp' is redundant or there is possible null pointer dereference: strp. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBFile.C:167:9: note: Assuming that condition 'strp' is not redundant
concavity_distr/pkgs/PDB/PDBFile.C:160:4: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBFile.C:969:19: warning: Either the condition '!residue' is redundant or there is possible null pointer dereference: residue. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBFile.C:967:13: note: Assuming that condition '!residue' is not redundant
concavity_distr/pkgs/PDB/PDBFile.C:969:19: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBFile.C:142:14: warning: Either the condition 'strp' is redundant or there is overflow in pointer subtraction. [nullPointerArithmeticRedundantCheck]
concavity_distr/pkgs/PDB/PDBFile.C:167:9: note: Assuming that condition 'strp' is not redundant
concavity_distr/pkgs/PDB/PDBFile.C:142:14: note: Null pointer subtraction
concavity_distr/pkgs/PDB/PDBFile.C:138:16: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/PDB/PDBFile.C:1327:14: style: The scope of the variable 'dummy' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBFile.C:1327:26: style: The scope of the variable 'from' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBFile.C:1327:37: style: The scope of the variable 'to' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBFile.C:1391:16: style: The scope of the variable 'dummy' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBFile.C:1391:28: style: The scope of the variable 'from' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBFile.C:1391:39: style: The scope of the variable 'to' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBFile.C:116:22: style:inconclusive: Function 'InsertCopy' argument 1 names different: declaration 'model' definition 'm'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBFile.h:40:34: note: Function 'InsertCopy' argument 1 names different: declaration 'model' definition 'm'.
concavity_distr/pkgs/PDB/PDBFile.C:116:22: note: Function 'InsertCopy' argument 1 names different: declaration 'model' definition 'm'.
concavity_distr/pkgs/PDB/PDBFile.C:133:37: style:inconclusive: Function 'FindAny' argument 2 names different: declaration 'model' definition 'm'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBFile.h:34:16: note: Function 'FindAny' argument 2 names different: declaration 'model' definition 'm'.
concavity_distr/pkgs/PDB/PDBFile.C:133:37: note: Function 'FindAny' argument 2 names different: declaration 'model' definition 'm'.
concavity_distr/pkgs/PDB/PDBFile.C:133:51: style:inconclusive: Function 'FindAny' argument 3 names different: declaration 'chain' definition 'c'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBFile.h:34:41: note: Function 'FindAny' argument 3 names different: declaration 'chain' definition 'c'.
concavity_distr/pkgs/PDB/PDBFile.C:133:51: note: Function 'FindAny' argument 3 names different: declaration 'chain' definition 'c'.
concavity_distr/pkgs/PDB/PDBFile.C:133:67: style:inconclusive: Function 'FindAny' argument 4 names different: declaration 'residue' definition 'r'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBFile.h:35:18: note: Function 'FindAny' argument 4 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBFile.C:133:67: note: Function 'FindAny' argument 4 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBFile.C:133:80: style:inconclusive: Function 'FindAny' argument 5 names different: declaration 'atom' definition 'a'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBFile.h:35:44: note: Function 'FindAny' argument 5 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBFile.C:133:80: note: Function 'FindAny' argument 5 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBFile.C:858:24: style:inconclusive: Function 'ReadConsurfFiles' argument 1 names different: declaration 'hssp_basename' definition 'consurf_basename'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBFile.h:56:30: note: Function 'ReadConsurfFiles' argument 1 names different: declaration 'hssp_basename' definition 'consurf_basename'.
concavity_distr/pkgs/PDB/PDBFile.C:858:24: note: Function 'ReadConsurfFiles' argument 1 names different: declaration 'hssp_basename' definition 'consurf_basename'.
concavity_distr/pkgs/PDB/PDBFile.C:1638:42: style:inconclusive: Function 'CreateBonds' argument 2 names different: declaration 'max_gap' definition 'max_distance'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBFile.h:67:49: note: Function 'CreateBonds' argument 2 names different: declaration 'max_gap' definition 'max_distance'.
concavity_distr/pkgs/PDB/PDBFile.C:1638:42: note: Function 'CreateBonds' argument 2 names different: declaration 'max_gap' definition 'max_distance'.
concavity_distr/pkgs/PDB/PDBFile.C:372:14: style: Local variable 'model_name' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:252:8: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:372:14: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:411:14: style: Local variable 'i' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:403:12: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:411:14: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:517:18: style: Local variable 'buffer' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:459:8: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:517:18: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:517:33: style: Local variable 'bufferp' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:459:23: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:517:33: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:687:18: style: Local variable 'buffer' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:632:8: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:687:18: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:687:33: style: Local variable 'bufferp' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:632:23: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:687:33: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:1349:11: style: Local variable 'status' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:1315:9: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:1349:11: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:1325:15: style: Local variable 'i' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:1282:12: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:1325:15: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:1370:11: style: Local variable 'status' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:1315:9: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:1370:11: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:1386:14: style: Local variable 'chain_name' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:1299:10: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:1386:14: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:1414:13: style: Local variable 'status' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:1315:9: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:1414:13: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:1389:17: style: Local variable 'i' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBFile.C:1282:12: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBFile.C:1389:17: note: Shadow variable
concavity_distr/pkgs/PDB/PDBFile.C:1120:19: style: Variable 'aminoacid' is assigned a value that is never used. [unreadVariable]
concavity_distr/pkgs/PDB/PDBModel.C:58:37: style:inconclusive: Function 'FindAny' argument 2 names different: declaration 'chain' definition 'c'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBModel.h:48:16: note: Function 'FindAny' argument 2 names different: declaration 'chain' definition 'c'.
concavity_distr/pkgs/PDB/PDBModel.C:58:37: note: Function 'FindAny' argument 2 names different: declaration 'chain' definition 'c'.
concavity_distr/pkgs/PDB/PDBModel.C:58:53: style:inconclusive: Function 'FindAny' argument 3 names different: declaration 'residue' definition 'r'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBModel.h:48:43: note: Function 'FindAny' argument 3 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBModel.C:58:53: note: Function 'FindAny' argument 3 names different: declaration 'residue' definition 'r'.
concavity_distr/pkgs/PDB/PDBModel.C:58:66: style:inconclusive: Function 'FindAny' argument 4 names different: declaration 'atom' definition 'a'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBModel.h:49:15: note: Function 'FindAny' argument 4 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBModel.C:58:66: note: Function 'FindAny' argument 4 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBModel.C:109:22: style:inconclusive: Function 'InsertCopy' argument 1 names different: declaration 'chain' definition 'c'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBModel.h:53:34: note: Function 'InsertCopy' argument 1 names different: declaration 'chain' definition 'c'.
concavity_distr/pkgs/PDB/PDBModel.C:109:22: note: Function 'InsertCopy' argument 1 names different: declaration 'chain' definition 'c'.
concavity_distr/pkgs/PDB/PDBResidue.h:23:13: style:inconclusive: Technically the member function 'PDBResidue::IsBonded' can be const. [functionConst]
concavity_distr/pkgs/PDB/PDBResidue.C:94:1: note: Technically the member function 'PDBResidue::IsBonded' can be const.
concavity_distr/pkgs/PDB/PDBResidue.h:23:13: note: Technically the member function 'PDBResidue::IsBonded' can be const.
concavity_distr/pkgs/PDB/PDBResidue.h:24:13: style:inconclusive: Technically the member function 'PDBResidue::IsBonded' can be const. [functionConst]
concavity_distr/pkgs/PDB/PDBResidue.C:110:1: note: Technically the member function 'PDBResidue::IsBonded' can be const.
concavity_distr/pkgs/PDB/PDBResidue.h:24:13: note: Technically the member function 'PDBResidue::IsBonded' can be const.
concavity_distr/pkgs/PDB/PDBResidue.h:46:7: style:inconclusive: Technically the member function 'PDBResidue::FindAtoms' can be const. [functionConst]
concavity_distr/pkgs/PDB/PDBResidue.C:170:1: note: Technically the member function 'PDBResidue::FindAtoms' can be const.
concavity_distr/pkgs/PDB/PDBResidue.h:46:7: note: Technically the member function 'PDBResidue::FindAtoms' can be const.
concavity_distr/pkgs/PDB/PDBResidue.C:35:7: warning: Either the condition 'name' is redundant or there is possible null pointer dereference: name. [nullPointerRedundantCheck]
concavity_distr/pkgs/PDB/PDBResidue.C:31:7: note: Assuming that condition 'name' is not redundant
concavity_distr/pkgs/PDB/PDBResidue.C:35:7: note: Null pointer dereference
concavity_distr/pkgs/PDB/PDBResidue.C:201:16: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/PDB/PDBResidue.C:94:19: style:inconclusive: Function 'IsBonded' argument 1 names different: declaration 'atom' definition 'atom2'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBResidue.h:23:31: note: Function 'IsBonded' argument 1 names different: declaration 'atom' definition 'atom2'.
concavity_distr/pkgs/PDB/PDBResidue.C:94:19: note: Function 'IsBonded' argument 1 names different: declaration 'atom' definition 'atom2'.
concavity_distr/pkgs/PDB/PDBResidue.C:110:22: style:inconclusive: Function 'IsBonded' argument 1 names different: declaration 'residue' definition 'residue2'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBResidue.h:24:34: note: Function 'IsBonded' argument 1 names different: declaration 'residue' definition 'residue2'.
concavity_distr/pkgs/PDB/PDBResidue.C:110:22: note: Function 'IsBonded' argument 1 names different: declaration 'residue' definition 'residue2'.
concavity_distr/pkgs/PDB/PDBResidue.C:137:21: style:inconclusive: Function 'InsertCopy' argument 1 names different: declaration 'atom' definition 'a'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBResidue.h:51:32: note: Function 'InsertCopy' argument 1 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBResidue.C:137:21: note: Function 'InsertCopy' argument 1 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBResidue.C:194:36: style:inconclusive: Function 'FindAny' argument 2 names different: declaration 'atom' definition 'a'. [funcArgNamesDifferent]
concavity_distr/pkgs/PDB/PDBResidue.h:47:55: note: Function 'FindAny' argument 2 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBResidue.C:194:36: note: Function 'FindAny' argument 2 names different: declaration 'atom' definition 'a'.
concavity_distr/pkgs/PDB/PDBResidue.C:52:13: style: Local variable 'chain' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBResidue.h:68:13: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBResidue.C:52:13: note: Shadow variable
concavity_distr/pkgs/PDB/PDBResidue.C:258:19: style: Local variable 'aminoacid' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBResidue.h:69:17: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBResidue.C:258:19: note: Shadow variable
concavity_distr/pkgs/PDB/PDBResidue.C:529:19: style: Local variable 'aminoacid' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBResidue.h:69:17: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBResidue.C:529:19: note: Shadow variable
concavity_distr/pkgs/PDB/PDBResidue.C:603:18: style: Local variable 'principle_vector' shadows outer variable [shadowVariable]
concavity_distr/pkgs/PDB/PDBResidue.C:600:16: note: Shadowed declaration
concavity_distr/pkgs/PDB/PDBResidue.C:603:18: note: Shadow variable
concavity_distr/pkgs/PDB/PDBResidue.C:94:19: style: Parameter 'atom2' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/PDB/PDBResidue.C:110:22: style: Parameter 'residue2' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/PDB/PDBUtil.C:330:7: style: The scope of the variable 'i' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBUtil.C:330:9: style: The scope of the variable 'j' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBUtil.C:330:11: style: The scope of the variable 'k' can be reduced. [variableScope]
concavity_distr/pkgs/PDB/PDBUtil.C:327:54: warning: Function 'PDBAlignmentTransformation' argument order different: declaration 'atoms1, atoms2, weights, align_translation, align_rotation, align_scale' definition 'atoms2, atoms1, weights, align_translation, align_rotation, align_scale' [funcArgOrderDifferent]
concavity_distr/pkgs/PDB/PDBUtil.h:14:63: note: Function 'PDBAlignmentTransformation' argument order different: declaration 'atoms1, atoms2, weights, align_translation, align_rotation, align_scale' definition 'atoms2, atoms1, weights, align_translation, align_rotation, align_scale'
concavity_distr/pkgs/PDB/PDBUtil.C:327:54: note: Function 'PDBAlignmentTransformation' argument order different: declaration 'atoms1, atoms2, weights, align_translation, align_rotation, align_scale' definition 'atoms2, atoms1, weights, align_translation, align_rotation, align_scale'
concavity_distr/pkgs/PDB/PDBUtil.C:305:92: style: Parameter 'weights' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/PDB/PDBUtil.C:430:101: style: Parameter 'weights' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2261:5: warning: %d in format string (no. 1) requires 'int' but the argument type is 'unsigned int'. [invalidPrintfArgType_sint]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2249:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2256:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2262:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2274:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2326:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2387:90: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2388:90: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2389:91: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2550:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2558:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2565:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2612:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2619:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Grid.C:1389:33: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/R2Shapes/R2Grid.C:1390:33: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/R2Shapes/R2Grid.C:1085:11: style: The scope of the variable 's' can be reduced. [variableScope]
concavity_distr/pkgs/R2Shapes/R2Grid.C:1089:7: style: The scope of the variable 'first' can be reduced. [variableScope]
concavity_distr/pkgs/R2Shapes/R2Grid.C:1423:7: style: The scope of the variable 'ncrossings' can be reduced. [variableScope]
concavity_distr/pkgs/R2Shapes/R2Grid.C:496:18: style: Local variable 'value' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R2Shapes/R2Grid.C:488:16: note: Shadowed declaration
concavity_distr/pkgs/R2Shapes/R2Grid.C:496:18: note: Shadow variable
concavity_distr/pkgs/R2Shapes/R2Grid.C:505:18: style: Local variable 'value' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R2Shapes/R2Grid.C:488:16: note: Shadowed declaration
concavity_distr/pkgs/R2Shapes/R2Grid.C:505:18: note: Shadow variable
concavity_distr/pkgs/R2Shapes/R2Grid.C:531:18: style: Local variable 'value' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R2Shapes/R2Grid.C:523:16: note: Shadowed declaration
concavity_distr/pkgs/R2Shapes/R2Grid.C:531:18: note: Shadow variable
concavity_distr/pkgs/R2Shapes/R2Grid.C:540:18: style: Local variable 'value' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R2Shapes/R2Grid.C:523:16: note: Shadowed declaration
concavity_distr/pkgs/R2Shapes/R2Grid.C:540:18: note: Shadow variable
concavity_distr/pkgs/R2Shapes/R2Grid.C:2335:14: style: Local variable 'i' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2333:12: note: Shadowed declaration
concavity_distr/pkgs/R2Shapes/R2Grid.C:2335:14: note: Shadow variable
concavity_distr/pkgs/R2Shapes/R2Grid.C:2513:14: style: Local variable 'i' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2511:12: note: Shadowed declaration
concavity_distr/pkgs/R2Shapes/R2Grid.C:2513:14: note: Shadow variable
concavity_distr/pkgs/R2Shapes/R2Grid.C:1423:18: style: Variable 'ncrossings' is assigned a value that is never used. [unreadVariable]
concavity_distr/pkgs/R2Shapes/R2Grid.C:2445:10: style: Variable 'endian' is assigned a value that is never used. [unreadVariable]
concavity_distr/pkgs/R2Shapes/R2Image.C:814:90: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:815:90: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:816:91: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1227:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1234:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1249:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1256:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1306:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1313:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1365:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1372:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1383:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Image.C:1269:32: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/R2Shapes/R2Image.C:683:9: style: Local variable 'c' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R2Shapes/R2Image.C:644:7: note: Shadowed declaration
concavity_distr/pkgs/R2Shapes/R2Image.C:683:9: note: Shadow variable
concavity_distr/pkgs/R2Shapes/R2Io.C:78:6: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R2Shapes/R2Io.C:109:6: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R2Shapes/R2Polygon.C:332:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R2Shapes/R2Polygon.C:339:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Graphics/R3Io.C:34:12: warning: fscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Graphics/R3Io.C:141:10: warning: fscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Graphics/R3Io.C:174:10: warning: fscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Affine.C:74:28: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/R3Shapes/R3Align.C:227:7: style: The scope of the variable 'i' can be reduced. [variableScope]
concavity_distr/pkgs/R3Shapes/R3Align.C:227:9: style: The scope of the variable 'j' can be reduced. [variableScope]
concavity_distr/pkgs/R3Shapes/R3Align.C:227:11: style: The scope of the variable 'k' can be reduced. [variableScope]
concavity_distr/pkgs/R3Shapes/R3Align.C:209:13: style: Parameter 'rotation' can be declared as reference to const [constParameter]
concavity_distr/pkgs/R3Shapes/R3Align.C:209:32: style: Parameter 'center1' can be declared as reference to const [constParameter]
concavity_distr/pkgs/R3Shapes/R3Align.C:209:50: style: Parameter 'center2' can be declared as reference to const [constParameter]
concavity_distr/pkgs/R3Shapes/R3Align.C:12:34: style: Parameter 'points' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/R3Shapes/R3Align.C:208:56: style: Parameter 'weights' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/R3Shapes/R3Align.C:208:23: style: Parameter 'list1' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/R3Shapes/R3Align.C:208:39: style: Parameter 'list2' can be declared as pointer to const [constParameter]
concavity_distr/pkgs/R3Shapes/R3Cone.C:180:5: style:inconclusive: Found duplicate branches for 'if' and 'else'. [duplicateBranch]
concavity_distr/pkgs/R3Shapes/R3Cone.C:181:5: note: Found duplicate branches for 'if' and 'else'.
concavity_distr/pkgs/R3Shapes/R3Cone.C:180:5: note: Found duplicate branches for 'if' and 'else'.
concavity_distr/pkgs/R3Shapes/R3Draw.C:558:16: style: The scope of the variable 'surface_paths' can be reduced. [variableScope]
concavity_distr/pkgs/R3Shapes/R3Draw.C:566:16: style: The scope of the variable 'outline_path' can be reduced. [variableScope]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2155:13: error: Buffer is accessed out of bounds: toplbl [bufferAccessOutOfBounds]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2111:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2115:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2122:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2128:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2132:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2139:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2143:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2150:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2157:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2163:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2167:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2175:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2179:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2198:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2348:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2352:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2359:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2365:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2369:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2376:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2380:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2387:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2394:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2401:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2408:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:2415:5: error: Resource leak: fp [resourceLeak]
concavity_distr/pkgs/R3Shapes/R3Grid.C:361:18: style: Local variable 'j' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3Grid.C:356:14: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3Grid.C:361:18: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3Grid.C:1651:15: style: Local variable 'y' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3Grid.C:1645:14: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3Grid.C:1651:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3Grid.C:2882:14: style: Variable 'edgeTable' can be declared as const array [constVariable]
concavity_distr/pkgs/R3Shapes/R3Isect.C:1687:3: style:inconclusive: Statements following return, break, continue, goto or throw will never be executed. [unreachableCode]
concavity_distr/pkgs/R3Shapes/R3Isect.C:1804:18: style: Variable 'p1' can be declared as reference to const [constVariable]
concavity_distr/pkgs/R3Shapes/R3Isect.C:1805:18: style: Variable 'p2' can be declared as reference to const [constVariable]
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:62:3: performance: Variable 'split_coordinate' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:63:3: performance: Variable 'split_dimension' is assigned in constructor body. Consider performing initialization in initialization list. [useInitializationList]
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:38:3: style: Class 'R3KdtreeNode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:278:15: style: Local variable 'child_box' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:272:13: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:278:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:293:15: style: Local variable 'child_box' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:287:13: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3Kdtree.C:293:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2169:17: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2182:19: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2554:19: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2564:21: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2842:15: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2867:21: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2910:21: portability: Non reentrant function 'strtok' called. For threadsafe applications it is recommended to use the reentrant replacement function 'strtok_r'. [prohibitedstrtokCalled]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2039:9: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2048:11: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2059:11: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2138:13: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2242:10: warning: fscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2512:9: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2544:12: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2767:9: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2770:11: warning: sscanf() without field width limits can crash with huge input data. [invalidscanf]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:3408:19: warning: Either the condition 'e' is redundant or there is possible null pointer dereference: e. [nullPointerRedundantCheck]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:3409:12: note: Assuming that condition 'e' is not redundant
concavity_distr/pkgs/R3Shapes/R3Mesh.C:3407:28: note: Assignment to 'e=f->edge[j]'
concavity_distr/pkgs/R3Shapes/R3Mesh.C:3407:19: note: e is assigned 'f->edge[j]' here.
concavity_distr/pkgs/R3Shapes/R3Mesh.C:3408:19: note: Null pointer dereference
concavity_distr/pkgs/R3Shapes/R3Mesh.C:341:20: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:3034:39: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2314:17: style: The scope of the variable 'plist' can be reduced. [variableScope]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2319:9: style: The scope of the variable 'elem_name' can be reduced. [variableScope]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2556:15: style: Local variable 'id' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2541:11: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3Mesh.C:2556:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3Mesh.C:1750:16: style: Variable 'p0' can be declared as reference to const [constVariable]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:1751:16: style: Variable 'p1' can be declared as reference to const [constVariable]
concavity_distr/pkgs/R3Shapes/R3Mesh.C:1752:16: style: Variable 'p2' can be declared as reference to const [constVariable]
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:51:3: style: Class 'R3MeshSearchTreeNode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:537:15: style: Local variable 'child_box' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:531:13: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:537:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:552:15: style: Local variable 'child_box' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:546:13: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:552:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:901:15: style: Local variable 'child_box' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:895:13: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:901:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:916:15: style: Local variable 'child_box' shadows outer variable [shadowVariable]
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:910:13: note: Shadowed declaration
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:916:15: note: Shadow variable
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:137:18: style: Variable 'p1' can be declared as reference to const [constVariable]
concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:138:18: style: Variable 'p2' can be declared as reference to const [constVariable]
concavity_distr/pkgs/RNBasics/RNArray.h:78:7: performance:inconclusive: Technically the member function 'RNVArray::SwapEntries' can be static (but you may consider moving to unnamed namespace). [functionStatic]
concavity_distr/pkgs/RNBasics/RNArray.C:232:1: note: Technically the member function 'RNVArray::SwapEntries' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/RNBasics/RNArray.h:78:7: note: Technically the member function 'RNVArray::SwapEntries' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/RNBasics/RNArray.h:115:11: performance:inconclusive: Technically the member function 'RNArray::EntryContents' can be static (but you may consider moving to unnamed namespace). [functionStatic]
concavity_distr/pkgs/RNBasics/RNQueue.h:118:11: performance:inconclusive: Technically the member function 'RNQueue::EntryContents' can be static (but you may consider moving to unnamed namespace). [functionStatic]
concavity_distr/pkgs/RNBasics/RNQueue.h:140:10: style:inconclusive: Technically the member function 'RNQueue::Peek' can be const. [functionConst]
concavity_distr/pkgs/RNBasics/RNFlags.h:18:9: style: Class 'RNFlags' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/RNBasics/RNType.h:24:9: style: Class 'RNClassType' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/RNBasics/RNHeap.h:14:5: style: Class 'RNHeap' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/RNBasics/RNHeap.h:18:5: style: Class 'RNHeap' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/RNBasics/RNRgb.h:20:2: style: Class 'RNRgb' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
concavity_distr/pkgs/RNBasics/RNArray.h:120:43: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.h:134:43: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.h:136:43: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.h:138:42: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.h:140:45: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.h:142:44: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.h:144:39: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.h:148:33: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:123:43: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:145:43: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:147:43: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:149:42: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:151:45: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:153:44: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:155:39: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNQueue.h:159:33: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:51:33: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:52:33: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:164:46: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:175:42: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:198:42: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:205:42: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:226:51: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:253:51: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:271:42: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:278:42: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:301:21: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:302:21: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:324:31: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:325:38: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:374:40: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:375:40: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:391:32: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:392:38: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:430:30: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:443:52: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:450:61: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:460:61: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNArray.C:270:19: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:51:33: portability:inconclusive: Casting from double * to unsigned char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:324:17: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:325:24: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:374:26: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:375:26: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:391:18: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:392:24: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:443:38: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:450:47: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:460:47: portability: Casting between unsigned char * and double * which have an incompatible binary data representation. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNHeap.C:156:14: style:inconclusive: Function 'Push' argument 1 names different: declaration 'data' definition 'entry'. [funcArgNamesDifferent]
concavity_distr/pkgs/RNBasics/RNHeap.h:32:23: note: Function 'Push' argument 1 names different: declaration 'data' definition 'entry'.
concavity_distr/pkgs/RNBasics/RNHeap.C:156:14: note: Function 'Push' argument 1 names different: declaration 'data' definition 'entry'.
concavity_distr/pkgs/RNBasics/RNHeap.C:222:16: style:inconclusive: Function 'Update' argument 1 names different: declaration 'data' definition 'entry'. [funcArgNamesDifferent]
concavity_distr/pkgs/RNBasics/RNHeap.h:31:25: note: Function 'Update' argument 1 names different: declaration 'data' definition 'entry'.
concavity_distr/pkgs/RNBasics/RNHeap.C:222:16: note: Function 'Update' argument 1 names different: declaration 'data' definition 'entry'.
concavity_distr/pkgs/RNBasics/RNHeap.C:249:16: style:inconclusive: Function 'Remove' argument 1 names different: declaration 'data' definition 'entry'. [funcArgNamesDifferent]
concavity_distr/pkgs/RNBasics/RNHeap.h:30:25: note: Function 'Remove' argument 1 names different: declaration 'data' definition 'entry'.
concavity_distr/pkgs/RNBasics/RNHeap.C:249:16: note: Function 'Remove' argument 1 names different: declaration 'data' definition 'entry'.
concavity_distr/pkgs/RNBasics/RNHeap.C:314:14: style:inconclusive: Function 'BubbleUp' argument 1 names different: declaration 'i' definition 'index'. [funcArgNamesDifferent]
concavity_distr/pkgs/RNBasics/RNHeap.h:40:22: note: Function 'BubbleUp' argument 1 names different: declaration 'i' definition 'index'.
concavity_distr/pkgs/RNBasics/RNHeap.C:314:14: note: Function 'BubbleUp' argument 1 names different: declaration 'i' definition 'index'.
concavity_distr/pkgs/RNBasics/RNHeap.C:352:16: style:inconclusive: Function 'BubbleDown' argument 1 names different: declaration 'i' definition 'index'. [funcArgNamesDifferent]
concavity_distr/pkgs/RNBasics/RNHeap.h:41:24: note: Function 'BubbleDown' argument 1 names different: declaration 'i' definition 'index'.
concavity_distr/pkgs/RNBasics/RNHeap.C:352:16: note: Function 'BubbleDown' argument 1 names different: declaration 'i' definition 'index'.
concavity_distr/pkgs/RNBasics/RNIntval.C:42:1: warning:inconclusive: Member variable 'RNInterval::lo' is not initialized in the constructor. [uninitMemberVar]
concavity_distr/pkgs/RNBasics/RNIntval.C:42:1: warning:inconclusive: Member variable 'RNInterval::hi' is not initialized in the constructor. [uninitMemberVar]
concavity_distr/pkgs/RNBasics/RNMem.C:71:9: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNMem.C:73:13: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNMem.C:69:10: style: The scope of the variable 'swap_buffer' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNQueue.h:75:7: style:inconclusive: Technically the member function 'RNVQueue::Shift' can be const. [functionConst]
concavity_distr/pkgs/RNBasics/RNQueue.C:151:1: note: Technically the member function 'RNVQueue::Shift' can be const.
concavity_distr/pkgs/RNBasics/RNQueue.h:75:7: note: Technically the member function 'RNVQueue::Shift' can be const.
concavity_distr/pkgs/RNBasics/RNQueue.h:77:7: style:inconclusive: Technically the member function 'RNVQueue::Reverse' can be const. [functionConst]
concavity_distr/pkgs/RNBasics/RNQueue.C:186:1: note: Technically the member function 'RNVQueue::Reverse' can be const.
concavity_distr/pkgs/RNBasics/RNQueue.h:77:7: note: Technically the member function 'RNVQueue::Reverse' can be const.
concavity_distr/pkgs/RNBasics/RNQueue.h:82:12: performance:inconclusive: Technically the member function 'RNVQueue::IsValid' can be static (but you may consider moving to unnamed namespace). [functionStatic]
concavity_distr/pkgs/RNBasics/RNQueue.C:253:1: note: Technically the member function 'RNVQueue::IsValid' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/RNBasics/RNQueue.h:82:12: note: Technically the member function 'RNVQueue::IsValid' can be static (but you may consider moving to unnamed namespace).
concavity_distr/pkgs/RNBasics/RNQueue.C:123:11: style: Local variable 'head' shadows outer variable [shadowVariable]
concavity_distr/pkgs/RNBasics/RNQueue.h:97:6: note: Shadowed declaration
concavity_distr/pkgs/RNBasics/RNQueue.C:123:11: note: Shadow variable
concavity_distr/pkgs/RNBasics/RNRgb.C:44:1: warning:inconclusive: Member variable 'RNRgb::c' is not initialized in the constructor. [uninitMemberVar]
concavity_distr/pkgs/RNBasics/RNScalar.C:93:30: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNScalar.C:94:30: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:528:43: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:531:23: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:532:23: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:535:5: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:536:5: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:539:17: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:559:2: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:564:2: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:566:5: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:707:9: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:739:5: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:773:21: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:789:5: style: C-style pointer casting [cstyleCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:535:5: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:536:5: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:539:17: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:539:17: portability:inconclusive: Casting from const double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:559:2: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:564:2: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:566:5: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:739:5: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:789:5: portability:inconclusive: Casting from double * to char * is not portable due to different binary data representations on different platforms. [invalidPointerCast]
concavity_distr/pkgs/RNBasics/RNSvd.C:213:14: style: The scope of the variable 'x' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:213:16: style: The scope of the variable 'y' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:230:14: style: The scope of the variable 'x' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:230:16: style: The scope of the variable 'y' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:263:14: style: The scope of the variable 'r' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:263:17: style: The scope of the variable 'x' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:263:20: style: The scope of the variable 'hypot' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:263:27: style: The scope of the variable 'cos' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:263:32: style: The scope of the variable 'sin' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:307:14: style: The scope of the variable 'r' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:307:17: style: The scope of the variable 'x' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:307:20: style: The scope of the variable 'hypot' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:307:27: style: The scope of the variable 'cos' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:307:32: style: The scope of the variable 'sin' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:360:14: style: The scope of the variable 'x' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:360:17: style: The scope of the variable 'r' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:360:20: style: The scope of the variable 'hypot' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:360:27: style: The scope of the variable 'cos' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:360:32: style: The scope of the variable 'sin' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNSvd.C:587:21: style: The scope of the variable 't' can be reduced. [variableScope]
concavity_distr/pkgs/RNBasics/RNTime.C:106:5: style: Obsolescent function 'usleep' called. It is recommended to use 'nanosleep' or 'setitimer' instead. [prohibitedusleepCalled]
concavity_distr/pkgs/RNBasics/RNType.C:59:8: warning: Class 'RNClassType' does not have a copy constructor which is recommended since it has dynamic memory/resource allocation(s). [noCopyConstructor]
concavity_distr/pkgs/RNBasics/RNType.C:59:8: warning: Class 'RNClassType' does not have a operator= which is recommended since it has dynamic memory/resource allocation(s). [noOperatorEq]
diff:
head concavity_distr/apps/concavity/pocket_extraction.C:162:7: style: Variable 'grid_resolution' can be declared as const array [constVariable]
2.8 concavity_distr/apps/concavity/pocket_extraction.C:162:7: style: Variable 'grid_resolution' can be declared with const [constVariable]
head concavity_distr/pkgs/PDB/PDBAtom.C:119:19: style: Parameter 'atom2' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/PDB/PDBAtom.C:119:19: style: Parameter 'atom2' can be declared with const [constParameter]
head concavity_distr/pkgs/PDB/PDBAtom.C:134:22: style: Parameter 'residue2' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/PDB/PDBAtom.C:134:22: style: Parameter 'residue2' can be declared with const [constParameter]
head concavity_distr/pkgs/PDB/PDBBond.h:133:20: style: Parameter 'atom' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/PDB/PDBBond.h:133:20: style: Parameter 'atom' can be declared with const [constParameter]
head concavity_distr/pkgs/PDB/PDBFile.h:10:3: style: Class 'PDBFile' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]
head concavity_distr/pkgs/PDB/PDBResidue.C:110:22: style: Parameter 'residue2' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/PDB/PDBResidue.C:110:22: style: Parameter 'residue2' can be declared with const [constParameter]
head concavity_distr/pkgs/PDB/PDBResidue.C:94:19: style: Parameter 'atom2' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/PDB/PDBResidue.C:94:19: style: Parameter 'atom2' can be declared with const [constParameter]
head concavity_distr/pkgs/PDB/PDBUtil.C:305:92: style: Parameter 'weights' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/PDB/PDBUtil.C:305:92: style: Parameter 'weights' can be declared with const [constParameter]
head concavity_distr/pkgs/PDB/PDBUtil.C:430:101: style: Parameter 'weights' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/PDB/PDBUtil.C:430:101: style: Parameter 'weights' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Align.C:12:34: style: Parameter 'points' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/R3Shapes/R3Align.C:12:34: style: Parameter 'points' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Align.C:208:23: style: Parameter 'list1' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/R3Shapes/R3Align.C:208:23: style: Parameter 'list1' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Align.C:208:39: style: Parameter 'list2' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/R3Shapes/R3Align.C:208:39: style: Parameter 'list2' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Align.C:208:56: style: Parameter 'weights' can be declared as pointer to const [constParameter]
2.8 concavity_distr/pkgs/R3Shapes/R3Align.C:208:56: style: Parameter 'weights' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Align.C:209:13: style: Parameter 'rotation' can be declared as reference to const [constParameter]
2.8 concavity_distr/pkgs/R3Shapes/R3Align.C:209:13: style: Parameter 'rotation' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Align.C:209:32: style: Parameter 'center1' can be declared as reference to const [constParameter]
2.8 concavity_distr/pkgs/R3Shapes/R3Align.C:209:32: style: Parameter 'center1' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Align.C:209:50: style: Parameter 'center2' can be declared as reference to const [constParameter]
2.8 concavity_distr/pkgs/R3Shapes/R3Align.C:209:50: style: Parameter 'center2' can be declared with const [constParameter]
head concavity_distr/pkgs/R3Shapes/R3Grid.C:2882:14: style: Variable 'edgeTable' can be declared as const array [constVariable]
2.8 concavity_distr/pkgs/R3Shapes/R3Grid.C:2882:14: style: Variable 'edgeTable' can be declared with const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3Isect.C:1804:18: style: Variable 'p1' can be declared as reference to const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3Isect.C:1805:18: style: Variable 'p2' can be declared as reference to const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3Mesh.C:1750:16: style: Variable 'p0' can be declared as reference to const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3Mesh.C:1751:16: style: Variable 'p1' can be declared as reference to const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3Mesh.C:1752:16: style: Variable 'p2' can be declared as reference to const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:137:18: style: Variable 'p1' can be declared as reference to const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:138:18: style: Variable 'p2' can be declared as reference to const [constVariable]
head concavity_distr/pkgs/R3Shapes/R3MeshSearchTree.C:51:3: style: Class 'R3MeshSearchTreeNode' has a constructor with 1 argument that is not explicit. [noExplicitConstructor]


DONE