2026-05-31 21:39
ftp://ftp.de.debian.org/debian/pool/main/b/beast-mcmc/beast-mcmc_1.10.4+dfsg.orig.tar.xz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j1
platform: Linux-6.12.88+deb13-amd64-x86_64-with-glibc2.41
python: 3.12.13
client-version: 1.4.0
compiler: g++ (Debian 14.2.0-19) 14.2.0
cppcheck: head 2.20.0
head-info: 8c14fc7 (2026-05-31 09:56:45 +0200)
count: 374 114
elapsed-time: 0.3 0.3
head-timing-info:

old-timing-info:

head results:
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:257:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1228:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2110:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2200:73: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:40:19: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:40:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:41:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:41:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:42:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:271:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:271:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:272:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:272:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:273:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:68: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1241:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1241:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1242:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1242:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1243:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:67: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2126:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2126:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2127:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:107:12: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:153:12: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:199:12: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:281:6: style: Unused variable: i [unusedVariable]
beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1251:6: style: Unused variable: i [unusedVariable]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:81:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:127:73: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:204:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:262:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:22:19: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:22:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:23:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:23:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:24:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:25:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:67: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:95:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:95:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:96:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:97:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 8 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:139:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:139:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:140:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:140:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:141:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:142:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:68: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:219:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:219:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:220:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:220:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:221:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:222:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:160:8: style: Local variable 'state1' shadows outer variable [shadowVariable]
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:150:15: note: Shadowed variable
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:160:8: note: Shadow local variable
beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:150:15: style: Unused variable: state1 [unusedVariable]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:41:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:62:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:116:79: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:135:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:413:73: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:84:2: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:30:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeMemoryArray' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:30:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeMemoryArray' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:30:35: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeMemoryArray' argument 3 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:53:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeIntMemoryArray' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:53:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeIntMemoryArray' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:53:35: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeIntMemoryArray' argument 3 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:75:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_freeNativeMemoryArray' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:75:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_freeNativeMemoryArray' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:75:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_freeNativeMemoryArray' argument 3 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 3 names different: declaration '<unnamed>' definition 'inFromJavaArray'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:65: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:83: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 5 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:101: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:116: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:40: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 3 names different: declaration '<unnamed>' definition 'inFromJavaArray'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:62: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:80: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 5 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:98: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:113: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 3 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:54: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:79: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 5 names different: declaration '<unnamed>' definition 'inToJavaArray'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:99: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:114: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 3 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:54: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:76: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 5 names different: declaration '<unnamed>' definition 'inToJavaArray'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:96: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:111: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:55: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:74: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:93: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:8: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:27: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:46: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:64: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:53: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:72: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:91: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:8: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:27: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:46: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:64: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:61: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:81: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:100: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:373:17: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:373:35: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 8 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:53: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:72: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:89: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:107: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:423:9: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:423:28: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'inPartials3'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:423:46: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:310:8: style: Local variable 'state1' shadows outer variable [shadowVariable]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:300:15: note: Shadowed variable
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:310:8: note: Shadow local variable
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:20:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:25:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:215:8: style: Variable 'partials1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:216:8: style: Variable 'matrices1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:217:8: style: Variable 'partials2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:218:8: style: Variable 'matrices2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:276:8: style: Variable 'states1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:277:8: style: Variable 'matrices1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:278:8: style: Variable 'partials2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:279:8: style: Variable 'matrices2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:375:8: style: Variable 'partials1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:427:8: style: Variable 'states1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:428:8: style: Variable 'states2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:430:8: style: Variable 'matrices1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:431:8: style: Variable 'matrices2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:300:15: style: Unused variable: state1 [unusedVariable]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:159:60: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:38:3: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:43:31: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:46:31: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:43:12: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeStoreState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:43:25: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeStoreState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:46:12: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeRestoreState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:46:25: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeRestoreState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:12: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:25: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:36: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 3 names different: declaration '<unnamed>' definition 'inPtr'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:56: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 4 names different: declaration '<unnamed>' definition 'inIevc'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:77: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 5 names different: declaration '<unnamed>' definition 'inEvec'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:98: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 6 names different: declaration '<unnamed>' definition 'inEval'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:16: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 7 names different: declaration '<unnamed>' definition 'inEvalImag'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:33: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 8 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:51:23: style: Argument 'stateCount' shadows outer variable [shadowVariable]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:8:5: note: Shadowed variable
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:51:23: note: Shadow argument
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:60:6: style: Local variable 'stateCount' shadows outer variable [shadowVariable]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:8:5: note: Shadowed variable
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:60:6: note: Shadow local variable
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:33: style: Argument 'stateCount' shadows outer variable [shadowVariable]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:8:5: note: Shadowed variable
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:33: note: Shadow argument
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:23:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:29:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:36:9: style: Variable 'from' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:43:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:46:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:59:45: style: Variable 'EvalImag' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:153:8: style: Unused variable: j [unusedVariable]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:103:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:200:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:281:69: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:327:73: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:29:19: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:29:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:30:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:30:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:31:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:116:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:116:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:117:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:117:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:118:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:68: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:213:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:213:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:214:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:214:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:215:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:67: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:294:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:294:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:295:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:61:12: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:73:12: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:84:12: style: Variable 'w' is assigned a value that is never used. [unreadVariable]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:47:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:67:46: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:140:82: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:160:42: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:176:57: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:187:14: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:252:20: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:329:71: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable JNI_ABORT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:379:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:469:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:576:16: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:619:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:665:50: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable STATE_COUNT [valueFlowBailoutIncompleteVar]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:126:1: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:176:5: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:227:5: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:238:5: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:673:2: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:711:2: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:651:27: warning: Invalid log() argument nr 1. The value is 0 but the valid values are '4.94066e-324:'. [invalidFunctionArg]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:645:17: note: Assignment 'sum=0.0', assigned value is 0.0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:646:21: note: Assuming condition is false
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:651:27: note: Invalid argument
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:88:2: warning: If memory allocation fails, then there is a possible null pointer dereference: partials [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:13: note: Assignment 'partials=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:88:2: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:89:2: warning: If memory allocation fails, then there is a possible null pointer dereference: partials [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:13: note: Assignment 'partials=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:89:2: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:94:3: warning: If memory allocation fails, then there is a possible null pointer dereference: partials [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:13: note: Assignment 'partials=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:94:3: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:95:3: warning: If memory allocation fails, then there is a possible null pointer dereference: partials [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:87:13: note: Assignment 'partials=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:95:3: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:96:3: warning: If memory allocation fails, then there is a possible null pointer dereference: states [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:91:25: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:91:11: note: Assignment 'states=(int**)malloc(sizeof(int*)*nodeCount)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:96:3: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:100:11: warning: If memory allocation fails, then there is a possible null pointer dereference: currentMatricesIndices [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:99:42: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:99:29: note: Assignment 'currentMatricesIndices=(int*)malloc(sizeof(int)*nodeCount)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:100:11: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:104:11: warning: If memory allocation fails, then there is a possible null pointer dereference: currentPartialsIndices [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:103:42: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:103:29: note: Assignment 'currentPartialsIndices=(int*)malloc(sizeof(int)*nodeCount)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:104:11: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:108:2: warning: If memory allocation fails, then there is a possible null pointer dereference: matrices [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:13: note: Assignment 'matrices=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:108:2: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:109:2: warning: If memory allocation fails, then there is a possible null pointer dereference: matrices [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:13: note: Assignment 'matrices=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:109:2: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:111:3: warning: If memory allocation fails, then there is a possible null pointer dereference: matrices [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:13: note: Assignment 'matrices=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:111:3: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:112:3: warning: If memory allocation fails, then there is a possible null pointer dereference: matrices [nullPointerOutOfMemory]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:31: note: Assuming allocation function fails
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:107:13: note: Assignment 'matrices=(double***)malloc(sizeof(double**)*2)', assigned value is 0
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:112:3: note: Null pointer dereference
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 3 names different: declaration '<unnamed>' definition 'inNodeCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:53: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 4 names different: declaration '<unnamed>' definition 'inStateTipCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:75: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 5 names different: declaration '<unnamed>' definition 'inPatternCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:96: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 6 names different: declaration '<unnamed>' definition 'inMatrixCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:123:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_freeNativeMemory' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:123:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_freeNativeMemory' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 3 names different: declaration '<unnamed>' definition 'tipIndex'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:58: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 4 names different: declaration '<unnamed>' definition 'inTipPartials'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 3 names different: declaration '<unnamed>' definition 'tipIndex'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:55: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 4 names different: declaration '<unnamed>' definition 'inTipStates'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:174:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateRootFrequencies' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:174:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateRootFrequencies' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:174:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateRootFrequencies' argument 3 names different: declaration '<unnamed>' definition 'inFrequencies'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 3 names different: declaration '<unnamed>' definition 'inEigenVectors'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:72: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 4 names different: declaration '<unnamed>' definition 'inInvEigenVectors'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:104: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 5 names different: declaration '<unnamed>' definition 'inEigenValues'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:225:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryRates' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:225:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryRates' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:225:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryRates' argument 3 names different: declaration '<unnamed>' definition 'inRates'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:236:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryProportions' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:236:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryProportions' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:236:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryProportions' argument 3 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:40: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 3 names different: declaration '<unnamed>' definition 'inNodeIndices'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:68: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 4 names different: declaration '<unnamed>' definition 'inBranchLengths'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:90: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 5 names different: declaration '<unnamed>' definition 'count'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:40: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 3 names different: declaration '<unnamed>' definition 'inOperations'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:64: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 4 names different: declaration '<unnamed>' definition 'inDependencies'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:85: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 5 names different: declaration '<unnamed>' definition 'operationCount'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 3 names different: declaration '<unnamed>' definition 'rootNodeIndex'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:63: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 4 names different: declaration '<unnamed>' definition 'outLogLikelihoods'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:663:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_storeState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:663:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_storeState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:682:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_restoreState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:682:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_restoreState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:46:23: style: Parameter 'name' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:46:37: style: Parameter 'array' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:123:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:192:12: style: Variable 'element' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:200:12: style: Variable 'element' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:337:10: style: Variable 'matrices1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:338:10: style: Variable 'matrices2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:340:7: style: Variable 'states1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:341:7: style: Variable 'states2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:399:10: style: Variable 'matrices1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:400:10: style: Variable 'matrices2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:402:7: style: Variable 'states1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:403:10: style: Variable 'partials2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:496:10: style: Variable 'matrices1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:497:10: style: Variable 'matrices2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:499:10: style: Variable 'partials1' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:500:10: style: Variable 'partials2' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:613:10: style: Variable 'rootPartials' can be declared as pointer to const [constVariablePointer]
beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:682:12: style: Parameter 'env' can be declared as pointer to const [constParameterPointer]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:21:31: style: C-style pointer casting [cstyleCast]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:22:30: style: C-style pointer casting [cstyleCast]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:23:22: style: C-style pointer casting [cstyleCast]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:24:27: style: C-style pointer casting [cstyleCast]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:25:21: style: C-style pointer casting [cstyleCast]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:26:21: style: C-style pointer casting [cstyleCast]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:27:27: style: C-style pointer casting [cstyleCast]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:10: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:29: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 3 names different: declaration '<unnamed>' definition 'order'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:41: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 4 names different: declaration '<unnamed>' definition 'nz'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:50: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 5 names different: declaration '<unnamed>' definition 'maxBasis'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:68: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 6 names different: declaration '<unnamed>' definition 'time'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:87: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 7 names different: declaration '<unnamed>' definition 'operandVector'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:115: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 8 names different: declaration '<unnamed>' definition 'resultVector'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:137: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 9 names different: declaration '<unnamed>' definition 'tolerance'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:156: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 10 names different: declaration '<unnamed>' definition 'matrixNorm'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:181: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 11 names different: declaration '<unnamed>' definition 'rate'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:197: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 12 names different: declaration '<unnamed>' definition 'indexX'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:215: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 13 names different: declaration '<unnamed>' definition 'indexY'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:236: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 14 names different: declaration '<unnamed>' definition 'workspace'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:252: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 15 names different: declaration '<unnamed>' definition 'lengthWorkspace'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:279: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 16 names different: declaration '<unnamed>' definition 'intWorkspace'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:298: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 17 names different: declaration '<unnamed>' definition 'lengthIntWorkspace'. [funcArgNamesDifferentUnnamed]
beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:323: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 18 names different: declaration '<unnamed>' definition 'flag'. [funcArgNamesDifferentUnnamed]
diff:
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1240:68: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1241:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1241:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1242:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1242:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:1243:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2125:67: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2126:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2126:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:2127:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:270:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:271:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:271:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:272:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:272:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:273:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:39:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:40:19: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:40:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:41:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:41:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/AminoAcidLikelihoodCore.c:42:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeAminoAcidLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:138:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:139:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:139:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:140:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:140:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:141:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:142:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
2.20.0 beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:160:8: style: Local variable 'state1' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:150:15: note: Shadowed declaration
     beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:160:8: note: Shadow variable
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:160:8: style: Local variable 'state1' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:150:15: note: Shadowed variable
     beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:160:8: note: Shadow local variable
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:218:68: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:219:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:219:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:21:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:220:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:220:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:221:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:222:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativePartialsPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:22:19: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:22:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:23:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:23:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:24:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:25:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeStatesStatesPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:94:67: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:95:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:95:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:96:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/GeneralLikelihoodCore.c:97:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeGeneralLikelihoodCore_nativeIntegratePartials' argument 8 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:113: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:40: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 3 names different: declaration '<unnamed>' definition 'inFromJavaArray'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:62: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:80: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 5 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:125:98: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3IIJII' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:114: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 3 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:54: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:79: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 5 names different: declaration '<unnamed>' definition 'inToJavaArray'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:155:99: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3DII' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:111: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 3 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:54: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:76: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 5 names different: declaration '<unnamed>' definition 'inToJavaArray'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:180:96: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_getNativeMemoryArray__JI_3III' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:55: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:74: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:212:93: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:27: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:46: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:64: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:213:8: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:53: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:72: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:273:91: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:27: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:46: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:64: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:274:8: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:30:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeMemoryArray' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:30:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeMemoryArray' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:30:35: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeMemoryArray' argument 3 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
2.20.0 beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:310:8: style: Local variable 'state1' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:300:15: note: Shadowed declaration
     beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:310:8: note: Shadow variable
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:310:8: style: Local variable 'state1' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:300:15: note: Shadowed variable
     beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:310:8: note: Shadow local variable
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:100: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:61: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:372:81: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:373:17: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:373:35: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeIntegratePartials' argument 8 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:107: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:53: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:72: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:422:89: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:423:28: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'inPartials3'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:423:46: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 10 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:423:9: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:53:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeIntMemoryArray' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:53:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeIntMemoryArray' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:53:35: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_allocateNativeIntMemoryArray' argument 3 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:75:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_freeNativeMemoryArray' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:75:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_freeNativeMemoryArray' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:75:36: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_freeNativeMemoryArray' argument 3 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:101: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 6 names different: declaration '<unnamed>' definition 'toOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:116: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 7 names different: declaration '<unnamed>' definition 'length'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:12: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:25: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 3 names different: declaration '<unnamed>' definition 'inFromJavaArray'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:65: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 4 names different: declaration '<unnamed>' definition 'fromOffset'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeMemoryLikelihoodCore.c:94:83: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeMemoryLikelihoodCore_setNativeMemoryArray___3DIJII' argument 5 names different: declaration '<unnamed>' definition 'inNativePtr'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:12: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:25: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:36: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 3 names different: declaration '<unnamed>' definition 'inPtr'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:56: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 4 names different: declaration '<unnamed>' definition 'inIevc'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:77: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 5 names different: declaration '<unnamed>' definition 'inEvec'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:135:98: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 6 names different: declaration '<unnamed>' definition 'inEval'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:16: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 7 names different: declaration '<unnamed>' definition 'inEvalImag'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:33: style: Argument 'stateCount' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:8:5: note: Shadowed variable
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:33: note: Shadow argument
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:136:33: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeSetup' argument 8 names different: declaration '<unnamed>' definition 'stateCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:43:12: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeStoreState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:43:25: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeStoreState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:46:12: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeRestoreState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:46:25: style:inconclusive: Function 'Java_dr_evomodel_substmodel_NativeSubstitutionModel_nativeRestoreState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:51:23: style: Argument 'stateCount' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:8:5: note: Shadowed variable
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:51:23: note: Shadow argument
2.20.0 beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:60:6: style: Local variable 'stateCount' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:8:5: note: Shadowed declaration
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:60:6: note: Shadow variable
head beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:60:6: style: Local variable 'stateCount' shadows outer variable [shadowVariable]
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:8:5: note: Shadowed variable
     beast-mcmc-1.10.4/native/NativeSubstitutionModel.c:60:6: note: Shadow local variable
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:115:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:116:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:116:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:117:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:117:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:118:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 3 names different: declaration '<unnamed>' definition 'inPartials1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:212:68: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:213:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 5 names different: declaration '<unnamed>' definition 'inPartials2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:213:48: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:214:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:214:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:215:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativePartialsPartialsPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:39: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 3 names different: declaration '<unnamed>' definition 'inStates1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:28:63: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 4 names different: declaration '<unnamed>' definition 'inMatrices1'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:11: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:24: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:42: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 3 names different: declaration '<unnamed>' definition 'inPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:293:67: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 4 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:294:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 5 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:294:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 6 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:295:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeIntegratePartials' argument 7 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:29:19: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 5 names different: declaration '<unnamed>' definition 'inStates2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:29:43: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 6 names different: declaration '<unnamed>' definition 'inMatrices2'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:30:14: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 7 names different: declaration '<unnamed>' definition 'patternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:30:33: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 8 names different: declaration '<unnamed>' definition 'matrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/NucleotideLikelihoodCore.c:31:22: style:inconclusive: Function 'Java_dr_evomodel_treelikelihood_NativeNucleotideLikelihoodCore_nativeStatesStatesPruning' argument 9 names different: declaration '<unnamed>' definition 'outPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:123:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_freeNativeMemory' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:123:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_freeNativeMemory' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 3 names different: declaration '<unnamed>' definition 'tipIndex'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:134:58: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipPartials' argument 4 names different: declaration '<unnamed>' definition 'inTipPartials'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 3 names different: declaration '<unnamed>' definition 'tipIndex'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:153:55: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_setTipStates' argument 4 names different: declaration '<unnamed>' definition 'inTipStates'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:174:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateRootFrequencies' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:174:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateRootFrequencies' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:174:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateRootFrequencies' argument 3 names different: declaration '<unnamed>' definition 'inFrequencies'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:104: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 5 names different: declaration '<unnamed>' definition 'inEigenValues'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 3 names different: declaration '<unnamed>' definition 'inEigenVectors'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:185:72: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateEigenDecomposition' argument 4 names different: declaration '<unnamed>' definition 'inInvEigenVectors'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:225:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryRates' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:225:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryRates' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:225:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryRates' argument 3 names different: declaration '<unnamed>' definition 'inRates'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:236:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryProportions' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:236:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryProportions' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:236:43: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateCategoryProportions' argument 3 names different: declaration '<unnamed>' definition 'inProportions'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:40: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 3 names different: declaration '<unnamed>' definition 'inNodeIndices'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:68: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 4 names different: declaration '<unnamed>' definition 'inBranchLengths'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:247:90: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updateMatrices' argument 5 names different: declaration '<unnamed>' definition 'count'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:40: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 3 names different: declaration '<unnamed>' definition 'inOperations'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:64: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 4 names different: declaration '<unnamed>' definition 'inDependencies'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:295:85: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_updatePartials' argument 5 names different: declaration '<unnamed>' definition 'operationCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 3 names different: declaration '<unnamed>' definition 'rootNodeIndex'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:609:63: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_calculateLogLikelihoods' argument 4 names different: declaration '<unnamed>' definition 'outLogLikelihoods'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:35: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 3 names different: declaration '<unnamed>' definition 'inNodeCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:53: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 4 names different: declaration '<unnamed>' definition 'inStateTipCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:75: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 5 names different: declaration '<unnamed>' definition 'inPatternCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:60:96: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_initialize' argument 6 names different: declaration '<unnamed>' definition 'inMatrixCount'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:663:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_storeState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:663:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_storeState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:682:12: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_restoreState' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/NewNativeLikelihoodCore.c:682:25: style:inconclusive: Function 'Java_dr_evomodel_newtreelikelihood_NativeLikelihoodCore_restoreState' argument 2 names different: declaration '<unnamed>' definition 'obj'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:10: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 1 names different: declaration '<unnamed>' definition 'env'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:115: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 8 names different: declaration '<unnamed>' definition 'resultVector'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:137: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 9 names different: declaration '<unnamed>' definition 'tolerance'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:156: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 10 names different: declaration '<unnamed>' definition 'matrixNorm'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:181: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 11 names different: declaration '<unnamed>' definition 'rate'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:197: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 12 names different: declaration '<unnamed>' definition 'indexX'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:215: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 13 names different: declaration '<unnamed>' definition 'indexY'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:236: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 14 names different: declaration '<unnamed>' definition 'workspace'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:252: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 15 names different: declaration '<unnamed>' definition 'lengthWorkspace'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:279: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 16 names different: declaration '<unnamed>' definition 'intWorkspace'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:298: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 17 names different: declaration '<unnamed>' definition 'lengthIntWorkspace'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:29: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 3 names different: declaration '<unnamed>' definition 'order'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:323: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 18 names different: declaration '<unnamed>' definition 'flag'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:41: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 4 names different: declaration '<unnamed>' definition 'nz'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:50: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 5 names different: declaration '<unnamed>' definition 'maxBasis'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:68: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 6 names different: declaration '<unnamed>' definition 'time'. [funcArgNamesDifferentUnnamed]
head beast-mcmc-1.10.4/native/deprecated/expokit/SparseMatrixExponential.cpp:8:87: style:inconclusive: Function 'Java_dr_math_SparseMatrixExponential_executeDGEXPV' argument 7 names different: declaration '<unnamed>' definition 'operandVector'. [funcArgNamesDifferentUnnamed]


DONE