2025-07-06 23:00
ftp://ftp.de.debian.org/debian/pool/main/a/aragorn/aragorn_1.2.41.orig.tar.gz
cppcheck-options: --library=posix --library=gnu --library=bsd  --inconclusive --enable=style,information --inline-suppr --template=daca2 --disable=missingInclude --suppress=unmatchedSuppression --check-library --debug-warnings --suppress=autoNoType --suppress=valueFlowBailout --suppress=bailoutUninitVar --suppress=symbolDatabaseWarning --suppress=normalCheckLevelConditionExpressions -D__GNUC__ --platform=unix64 -j6
platform: Linux-6.1.0-37-amd64-x86_64-with-glibc2.36
python: 3.11.2
client-version: 1.3.67
compiler: g++ (Debian 12.2.0-14+deb12u1) 12.2.0
cppcheck: head 2.17.0
head-info: 0eb4dd8 (2025-07-06 21:35:35 +0200)
count: 437 436
elapsed-time: 25.2 26.2
head-timing-info:

old-timing-info:

head results:
aragorn/aragorn1.2.41.c:3795:40: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:3820:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:3831:29: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable EOF [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:4155:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:6361:26: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:6425:23: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:6557:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:6851:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:7492:21: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:10500:11: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:11223:15: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:11408:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:11499:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:11573:24: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:11748:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:11953:17: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:12059:22: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stderr [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:12184:10: debug: valueFlowConditionExpressions bailout: Skipping function due to incomplete variable stdout [valueFlowBailoutIncompleteVar]
aragorn/aragorn1.2.41.c:12418:18: style:inconclusive: Boolean expression '!sw.trna' is used in bitwise operation. Did you mean '&&'? [bitwiseOnBoolean]
aragorn/aragorn1.2.41.c:4156:27: style: Expression is always false because 'else if' condition matches previous condition at line 4154. [multiCondition]
aragorn/aragorn1.2.41.c:9817:33: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
aragorn/aragorn1.2.41.c:9815:31: note: outer condition: tstem>=3
aragorn/aragorn1.2.41.c:9817:33: note: identical inner condition: tstem>=3
aragorn/aragorn1.2.41.c:3893:17: style: Variable 'd->aseqlen' is reassigned a value before the old one has been used. [redundantAssignment]
aragorn/aragorn1.2.41.c:3888:45: note: d->aseqlen is assigned
aragorn/aragorn1.2.41.c:3893:17: note: d->aseqlen is overwritten
aragorn/aragorn1.2.41.c:5433:7: style: Variable 'xdiff' is reassigned a value before the old one has been used. [redundantAssignment]
aragorn/aragorn1.2.41.c:5426:7: note: xdiff is assigned
aragorn/aragorn1.2.41.c:5433:7: note: xdiff is overwritten
aragorn/aragorn1.2.41.c:4309:48: style: Checking if unsigned expression 'cn=vbp[sen[-1]][sn[1]]' is less than zero. [unsignedLessThanZero]
aragorn/aragorn1.2.41.c:5990:48: style: Checking if unsigned expression 'cn=vbp[sen[-1]][sn[1]]' is less than zero. [unsignedLessThanZero]
aragorn/aragorn1.2.41.c:7986:32: style: Checking if unsigned expression 'abondtype&0xf' is less than zero. [unsignedLessThanZero]
aragorn/aragorn1.2.41.c:7987:33: style: Checking if unsigned expression 'cbondtype&0xf' is less than zero. [unsignedLessThanZero]
aragorn/aragorn1.2.41.c:4096:3: style: Label 'SC' is not used. [unusedLabel]
aragorn/aragorn1.2.41.c:4191:16: style: Local variable 'aa' shadows outer function [shadowFunction]
aragorn/aragorn1.2.41.c:4182:7: note: Shadowed declaration
aragorn/aragorn1.2.41.c:4191:16: note: Shadow variable
aragorn/aragorn1.2.41.c:5803:10: style: Local variable 'gc' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1195:7: note: Shadowed declaration
aragorn/aragorn1.2.41.c:5803:10: note: Shadow variable
aragorn/aragorn1.2.41.c:6099:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1392:10: note: Shadowed declaration
aragorn/aragorn1.2.41.c:6099:17: note: Shadow variable
aragorn/aragorn1.2.41.c:6132:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1392:10: note: Shadowed declaration
aragorn/aragorn1.2.41.c:6132:17: note: Shadow variable
aragorn/aragorn1.2.41.c:6197:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1392:10: note: Shadowed declaration
aragorn/aragorn1.2.41.c:6197:17: note: Shadow variable
aragorn/aragorn1.2.41.c:6313:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1392:10: note: Shadowed declaration
aragorn/aragorn1.2.41.c:6313:17: note: Shadow variable
aragorn/aragorn1.2.41.c:6452:17: style: Local variable 'aa' shadows outer function [shadowFunction]
aragorn/aragorn1.2.41.c:4182:7: note: Shadowed declaration
aragorn/aragorn1.2.41.c:6452:17: note: Shadow variable
aragorn/aragorn1.2.41.c:6940:42: style: Local variable 'stem_energy' shadows outer function [shadowFunction]
aragorn/aragorn1.2.41.c:6096:8: note: Shadowed declaration
aragorn/aragorn1.2.41.c:6940:42: note: Shadow variable
aragorn/aragorn1.2.41.c:7017:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1392:10: note: Shadowed declaration
aragorn/aragorn1.2.41.c:7017:17: note: Shadow variable
aragorn/aragorn1.2.41.c:10017:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1392:10: note: Shadowed declaration
aragorn/aragorn1.2.41.c:10017:17: note: Shadow variable
aragorn/aragorn1.2.41.c:10124:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1392:10: note: Shadowed declaration
aragorn/aragorn1.2.41.c:10124:17: note: Shadow variable
aragorn/aragorn1.2.41.c:10806:10: style: Local variable 'gc' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1195:7: note: Shadowed declaration
aragorn/aragorn1.2.41.c:10806:10: note: Shadow variable
aragorn/aragorn1.2.41.c:10878:10: style: Local variable 'gc' shadows outer variable [shadowVariable]
aragorn/aragorn1.2.41.c:1195:7: note: Shadowed declaration
aragorn/aragorn1.2.41.c:10878:10: note: Shadow variable
aragorn/aragorn1.2.41.c:11541:25: style: Local variable 'overlap' shadows outer function [shadowFunction]
aragorn/aragorn1.2.41.c:6764:6: note: Shadowed declaration
aragorn/aragorn1.2.41.c:11541:25: note: Shadow variable
aragorn/aragorn1.2.41.c:3552:18: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3557:32: style: Parameter 'key' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3564:29: style: Parameter 'k' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3576:33: style: Parameter 'k' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3588:33: style: Parameter 'k' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3600:35: style: Parameter 'k' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3616:11: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:3629:22: style: Parameter 'line' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3740:18: style: Parameter 'from' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3745:21: style: Parameter 'from1' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3745:34: style: Parameter 'from2' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3760:21: style: Parameter 'from' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:3771:25: style: Parameter 'line' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4073:14: style: Variable 'map' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4141:15: style: Variable 'base' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4175:15: style: Variable 'base' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4182:15: style: Parameter 'anticodon' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4182:31: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4190:22: style: Parameter 'codon' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4190:34: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4199:22: style: Parameter 'codon' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4199:35: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4199:43: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4209:22: style: Parameter 'codon' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4209:34: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4217:18: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4223:23: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4223:42: style: Parameter 'a' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4238:17: style: Variable 'score' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4254:30: style: Parameter 'seq' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4266:28: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4267:26: style: Variable 'sn' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:4267:35: style: Variable 'pos1' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:4267:41: style: Variable 'pos2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:4267:55: style: Variable 'sc' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:4267:59: style: Variable 'sd' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:4267:63: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:4269:23: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4270:23: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4271:23: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4272:23: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4331:15: style: Variable 'trnatype' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4406:10: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:4417:14: style: Variable 'ux' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4418:14: style: Variable 'uy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4419:14: style: Variable 'vx' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4420:14: style: Variable 'vy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4421:14: style: Variable 'loopu' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4443:14: style: Variable 'loopv' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4513:15: style: Variable 'base1' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4514:15: style: Variable 'base2' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4515:14: style: Variable 'score' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4529:14: style: Variable 'ux' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4530:14: style: Variable 'uy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4531:14: style: Variable 'vx' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4532:14: style: Variable 'vy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4533:14: style: Variable 'loopu' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4545:14: style: Variable 'loopv' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4557:14: style: Variable 'dloopu' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4569:14: style: Variable 'dloopv' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4581:15: style: Variable 'bond1' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4582:15: style: Variable 'bond2' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4685:14: style: Variable 'ux' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4686:14: style: Variable 'uy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4687:14: style: Variable 'vx' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4688:14: style: Variable 'vy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4689:14: style: Variable 'loopu' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4711:14: style: Variable 'loopv' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4757:14: style: Variable 'ux' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4758:14: style: Variable 'uy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4759:14: style: Variable 'vx' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4760:14: style: Variable 'vy' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4781:14: style: Variable 'loopu' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4785:14: style: Variable 'loopv' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4856:26: style: Parameter 's1' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:4872:15: style: Variable 'bond2' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4947:15: style: Variable 'bond2' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:4997:32: style: Parameter 'matrix' can be declared as const array [constParameter]
aragorn/aragorn1.2.41.c:5008:48: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5023:20: style: Variable 'sd' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5117:26: style: Parameter 's1' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5117:36: style: Parameter 's2' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5201:8: style: Variable 'sseq' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5215:22: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5228:31: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5228:39: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5239:48: style: Parameter 'm' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5243:44: style: Parameter 'm' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5249:17: style: Variable 'sin' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5250:13: style: Variable 'st' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5316:12: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5346:13: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5373:13: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5403:34: style: Parameter 'm' can be declared as const array [constParameter]
aragorn/aragorn1.2.41.c:5475:35: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5477:12: style: Variable 'bplb' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5478:12: style: Variable 'bprb' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5563:68: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5565:26: style: Variable 'sa' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5565:46: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5566:12: style: Variable 'bplb' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5567:12: style: Variable 'bprb' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5641:10: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5696:10: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5792:22: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5792:30: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:5832:15: style: Variable 'type' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5833:15: style: Variable 'asterisk' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5930:15: style: Variable 'asterisk' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5942:15: style: Variable 'asterisk' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5952:26: style: Variable 'sn' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5952:35: style: Variable 'pos1' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5952:41: style: Variable 'pos2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5952:51: style: Variable 'sc' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5952:55: style: Variable 'sd' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5952:59: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:5954:23: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5955:23: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5956:23: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:5957:23: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6013:8: style: Variable 'sb' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6013:12: style: Variable 'sd' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6013:16: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6015:23: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6016:23: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6017:23: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6018:23: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6056:10: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6056:17: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6056:21: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6058:23: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6059:23: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6060:23: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6061:23: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6096:34: style: Parameter 's2' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6097:8: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6112:35: style: Parameter 's2' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6113:8: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6139:17: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6140:17: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6141:17: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6142:17: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6169:18: style: Variable 'sb' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6169:22: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6172:14: style: Variable 'gtem' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6173:17: style: Variable 'tagend_score' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6174:14: style: Variable 'nps' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6204:17: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6205:17: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6206:17: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6207:17: style: Variable 'K' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6208:17: style: Variable 'R' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6209:17: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6210:17: style: Variable 'Y' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6211:17: style: Variable 'nA' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6212:17: style: Variable 'nV' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6213:17: style: Variable 'nM' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6309:63: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6311:12: style: Variable 's2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6311:16: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6311:24: style: Variable 'si' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6311:40: style: Variable 'sl' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6311:44: style: Variable 'sx' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6311:48: style: Variable 'tem' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6320:17: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6321:17: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6322:17: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6323:17: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6380:47: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6382:12: style: Variable 's2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6386:23: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6387:23: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6388:23: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6389:23: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6451:67: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6452:28: style: Variable 'sb' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6452:32: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6452:40: style: Variable 'sl' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6455:14: style: Variable 'nps' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6469:17: style: Variable 'score' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6470:23: style: Variable 'tem' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6473:14: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6474:14: style: Variable 'V' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6475:14: style: Variable 'M' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6561:22: style: Parameter 'from' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6569:8: style: Variable 's1e' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6581:35: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6581:52: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6581:60: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6681:36: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6681:53: style: Parameter 't' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6764:24: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6764:31: style: Parameter 'sort' can be declared as const array [constParameter]
aragorn/aragorn1.2.41.c:6883:17: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6883:35: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:6885:14: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6886:14: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6933:11: style: Variable 'sl' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6933:27: style: Variable 'sa' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6933:31: style: Variable 'sb' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6934:19: style: Variable 'sle' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6934:24: style: Variable 'slb' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6934:29: style: Variable 'sld' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6935:32: style: Variable 'tend' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6935:59: style: Variable 'aend2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6936:18: style: Variable 'cloopend' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:6951:14: style: Variable 'cAI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6953:14: style: Variable 'cRI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6954:14: style: Variable 'cTI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6955:14: style: Variable 'cYI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6956:14: style: Variable 'AI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6957:14: style: Variable 'CI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6958:14: style: Variable 'GI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6959:14: style: Variable 'TI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6960:14: style: Variable 'RI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6961:14: style: Variable 'YI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6964:23: style: Variable 'At' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6965:23: style: Variable 'Ct' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6966:23: style: Variable 'Gt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6967:23: style: Variable 'Tt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6968:23: style: Variable 'cAt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6969:23: style: Variable 'cCt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6970:23: style: Variable 'cGt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6971:23: style: Variable 'cTt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6972:23: style: Variable 'aAt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6973:23: style: Variable 'aCt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6974:23: style: Variable 'aGt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6975:23: style: Variable 'aTt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6976:23: style: Variable 'dAt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6977:23: style: Variable 'dCt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6978:23: style: Variable 'dGt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6979:23: style: Variable 'dTt' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6980:23: style: Variable 'clmotif' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6982:14: style: Variable 'dloopi' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6986:14: style: Variable 'tloopa' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6989:17: style: Variable 'dA' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6990:17: style: Variable 'dT' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6991:17: style: Variable 'C' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6992:17: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6993:17: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6994:17: style: Variable 'AX' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6995:17: style: Variable 'AX37' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6996:17: style: Variable 'AXX' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6997:17: style: Variable 'AXX37' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6998:17: style: Variable 'AX7' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:6999:17: style: Variable 'CX' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7001:17: style: Variable 'CX7' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7002:17: style: Variable 'TX' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7005:17: style: Variable 'tC' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7006:17: style: Variable 'tG' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7007:17: style: Variable 'tT' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7008:17: style: Variable 'cA' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7010:17: style: Variable 'cR' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7011:17: style: Variable 'cT' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7012:17: style: Variable 'cY' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:7013:17: style: Variable 'loop_stab' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10005:24: style: Parameter 'seq' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:10007:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10007:14: style: Variable 's1' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10007:18: style: Variable 's2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10007:38: style: Variable 'ps' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10008:14: style: Variable 'gtem' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10009:17: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10010:17: style: Variable 'Ar' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10011:17: style: Variable 'Cr' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10012:17: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10013:17: style: Variable 'Ga' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10014:17: style: Variable 'K' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10015:17: style: Variable 'Tr' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10112:25: style: Parameter 'seq' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:10114:8: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10114:11: style: Variable 'v' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10114:14: style: Variable 's1' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10114:18: style: Variable 's2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10114:38: style: Variable 'ps' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10115:14: style: Variable 'gtem' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10117:17: style: Variable 'A' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10118:17: style: Variable 'Ar' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10119:17: style: Variable 'Cr' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10120:17: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10121:17: style: Variable 'Ga' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10122:17: style: Variable 'K' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10123:17: style: Variable 'Tr' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10220:48: style: Parameter 'seq' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:10263:48: style: Variable 'tloopfold' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10263:59: style: Variable 'tmv' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10264:12: style: Variable 's2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10264:20: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10264:24: style: Variable 'sl' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10264:28: style: Variable 'sg1' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10264:33: style: Variable 'sg2' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10268:23: style: Variable 'TT' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10270:23: style: Variable 'GG' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10273:23: style: Variable 'cA' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10274:23: style: Variable 'cC' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10275:23: style: Variable 'cG' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10276:23: style: Variable 'cT' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10277:14: style: Variable 'yic' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10278:14: style: Variable 'tic' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10279:14: style: Variable 'a1ic' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10280:14: style: Variable 'a2ic' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10281:14: style: Variable 'a3ic' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10282:14: style: Variable 'ric' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10283:14: style: Variable 'goffb' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10284:14: style: Variable 'goffe' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10285:14: style: Variable 'cY' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10286:14: style: Variable 'cR' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10288:17: style: Variable 'G' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10289:17: style: Variable 'T' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10290:17: style: Variable 'Y' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10291:17: style: Variable 'R' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10292:17: style: Variable 'YP' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10293:17: style: Variable 'RP' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10294:17: style: Variable 'RI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10295:17: style: Variable 'GI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10296:17: style: Variable 'YI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10297:17: style: Variable 'AI' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10298:17: style: Variable 'GC' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10299:17: style: Variable 'G3' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10300:17: style: Variable 'dR' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10301:17: style: Variable 'RH' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10302:17: style: Variable 'AGT' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10303:17: style: Variable 'dT' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10745:22: style: Variable 's' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10747:14: style: Variable 'codonorder' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:10804:34: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:10879:9: style: Variable 'f' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:10914:25: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:10914:53: style: Parameter 'sw' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:11132:44: style: Parameter 'sort' can be declared as const array [constParameter]
aragorn/aragorn1.2.41.c:11213:13: style: Variable 'gp' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:11214:13: style: Variable 'comp' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:11215:13: style: Variable 'aps' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:11363:59: style: Parameter 'margin' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:11367:13: style: Variable 'comp' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:11539:40: style: Parameter 'd' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:11618:11: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:11618:19: style: Variable 'sc' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:11623:15: style: Variable 'trnatypename' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:11625:15: style: Variable 'genecodename' can be declared as const array [constVariable]
aragorn/aragorn1.2.41.c:11926:11: style: Variable 'sf' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:11926:19: style: Variable 'sc' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:12057:32: style: Parameter 's' can be declared as pointer to const [constParameterPointer]
aragorn/aragorn1.2.41.c:12082:15: style: Variable 'se' can be declared as pointer to const [constVariablePointer]
aragorn/aragorn1.2.41.c:915:23: style: struct member 'data_set::filename' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1005:23: style: struct member 'trna_astem::pos1' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1006:23: style: struct member 'trna_astem::pos2' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1007:22: style: struct member 'trna_astem::stem' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1008:25: style: struct member 'trna_astem::energy' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1016:23: style: struct member 'mt_cds_codon::pos' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1017:22: style: struct member 'mt_cds_codon::comp' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1018:22: style: struct member 'mt_cds_codon::frame' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1019:22: style: struct member 'mt_cds_codon::codon' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1020:22: style: struct member 'mt_cds_codon::win' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1024:22: style: struct member 'mt_cds::comp' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1026:23: style: struct member 'mt_rrna::pos1' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1027:23: style: struct member 'mt_rrna::pos2' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1028:22: style: struct member 'mt_rrna::comp' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1030:23: style: struct member 'rrna_hairpin::pos1' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1031:23: style: struct member 'rrna_hairpin::pos2' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1032:22: style: struct member 'rrna_hairpin::stem' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1033:22: style: struct member 'rrna_hairpin::loop' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1035:23: style: struct member 'rrna_stem::pos1' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1036:23: style: struct member 'rrna_stem::pos2' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1037:22: style: struct member 'rrna_stem::stem' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1039:23: style: struct member 'cds_codon::pos' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1040:22: style: struct member 'cds_codon::comp' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1041:22: style: struct member 'cds_codon::frame' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1042:22: style: struct member 'cds_codon::codon' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1043:22: style: struct member 'cds_codon::win' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1069:22: style: struct member 'csw::tarm' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1071:22: style: struct member 'csw::tarmlength' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:1103:22: style: struct member 'csw::srpspace' is never used. [unusedStructMember]
aragorn/aragorn1.2.41.c:3867:9: style: Unused variable: ic [unusedVariable]
aragorn/aragorn1.2.41.c:5072:5: style: Unused variable: nn [unusedVariable]
aragorn/aragorn1.2.41.c:5200:7: style: Unused variable: i [unusedVariable]
aragorn/aragorn1.2.41.c:5928:10: style: Unused variable: tpe [unusedVariable]
aragorn/aragorn1.2.41.c:5928:15: style: Unused variable: sb [unusedVariable]
aragorn/aragorn1.2.41.c:5928:19: style: Unused variable: se [unusedVariable]
aragorn/aragorn1.2.41.c:5940:10: style: Unused variable: tpe [unusedVariable]
aragorn/aragorn1.2.41.c:5940:15: style: Unused variable: sb [unusedVariable]
aragorn/aragorn1.2.41.c:5940:19: style: Unused variable: se [unusedVariable]
aragorn/aragorn1.2.41.c:6827:7: style: Unused variable: i [unusedVariable]
aragorn/aragorn1.2.41.c:6929:43: style: Unused variable: ser [unusedVariable]
aragorn/aragorn1.2.41.c:6941:10: style: Unused variable: darmthresh [unusedVariable]
aragorn/aragorn1.2.41.c:10093:9: style: Variable 'as' is assigned a value that is never used. [unreadVariable]
aragorn/aragorn1.2.41.c:10199:9: style: Variable 'as' is assigned a value that is never used. [unreadVariable]
aragorn/aragorn1.2.41.c:10240:14: style: Variable 'as' is assigned a value that is never used. [unreadVariable]
aragorn/aragorn1.2.41.c:10879:11: style: Variable 'f' is assigned a value that is never used. [unreadVariable]
aragorn/aragorn1.2.41.c:10879:9: style: Variable 'f' is assigned a value that is never used. [unreadVariable]
aragorn/aragorn1.2.41.c:11022:15: style: Unused variable: q [unusedVariable]
aragorn/aragorn1.2.41.c:11024:9: style: Unused variable: s [unusedVariable]
aragorn/aragorn1.2.41.c:11107:6: style: Unused variable: nm [unusedVariable]
aragorn/aragorn1.2.41.c:11206:7: style: Unused variable: ld [unusedVariable]
aragorn/aragorn1.2.41.c:11209:53: style: Unused variable: s [unusedVariable]
diff:
head aragorn/aragorn1.2.41.c:10879:9: style: Variable 'f' is assigned a value that is never used. [unreadVariable]


DONE