2021-10-20 12:05
ftp://ftp.de.debian.org/debian/pool/main/a/aragorn/aragorn_1.2.38.orig.tar.gz
cppcheck-options: --library=posix --library=gnu  --showtime=top5 --check-library --inconclusive --enable=style,information --template=daca2 -D__GNUC__ --platform=unix64 -rp=temp
platform: Linux-4.4.0-19041-Microsoft-x86_64-with-glibc2.32
python: 3.9.7
client-version: 1.3.15
compiler: g++ (Debian 10.3.0-11) 10.3.0
cppcheck: head 2.6
head-info: 921f5c181 (2021-10-18 19:38:53 +0200)
count: 236 235
elapsed-time: 493.1 483.3
head-timing-info:
 Overall time: 0s

old-timing-info:
 Overall time: 0s

head results:
aragorn1.2.38/aragorn1.2.38.c:11730:18: style:inconclusive: Boolean expression '!sw.trna' is used in bitwise operation. Did you mean '&&'? [bitwiseOnBoolean]
aragorn1.2.38/aragorn1.2.38.c:3664:27: style: Expression is always false because 'else if' condition matches previous condition at line 3662. [multiCondition]
aragorn1.2.38/aragorn1.2.38.c:9147:33: warning: Identical inner 'if' condition is always true. [identicalInnerCondition]
aragorn1.2.38/aragorn1.2.38.c:9145:31: note: outer condition: tstem>=3
aragorn1.2.38/aragorn1.2.38.c:9147:33: note: identical inner condition: tstem>=3
aragorn1.2.38/aragorn1.2.38.c:3129:12: style: Condition 'c=='\t'' is always false [knownConditionTrueFalse]
aragorn1.2.38/aragorn1.2.38.c:6453:24: style: Condition 'cv<10' is always false [knownConditionTrueFalse]
aragorn1.2.38/aragorn1.2.38.c:6434:21: note: Assuming that condition 'cv<0x70' is not redundant
aragorn1.2.38/aragorn1.2.38.c:6453:24: note: Condition 'cv<10' is always false
aragorn1.2.38/aragorn1.2.38.c:8730:33: style: Condition 'var>=2' is always true [knownConditionTrueFalse]
aragorn1.2.38/aragorn1.2.38.c:8689:18: note: Assuming that condition 'var<3' is not redundant
aragorn1.2.38/aragorn1.2.38.c:8730:33: note: Condition 'var>=2' is always true
aragorn1.2.38/aragorn1.2.38.c:8984:24: style: Condition 'tstem>2' is always true [knownConditionTrueFalse]
aragorn1.2.38/aragorn1.2.38.c:8966:27: note: Assuming that condition 'tstem>=3' is not redundant
aragorn1.2.38/aragorn1.2.38.c:8984:24: note: Condition 'tstem>2' is always true
aragorn1.2.38/aragorn1.2.38.c:3401:17: style: Variable 'd->aseqlen' is reassigned a value before the old one has been used. [redundantAssignment]
aragorn1.2.38/aragorn1.2.38.c:3396:45: note: d->aseqlen is assigned
aragorn1.2.38/aragorn1.2.38.c:3401:17: note: d->aseqlen is overwritten
aragorn1.2.38/aragorn1.2.38.c:3817:48: style: Checking if unsigned expression 'cn=vbp[sen[-1]][sn[1]]' is less than zero. [unsignedLessThanZero]
aragorn1.2.38/aragorn1.2.38.c:5320:48: style: Checking if unsigned expression 'cn=vbp[sen[-1]][sn[1]]' is less than zero. [unsignedLessThanZero]
aragorn1.2.38/aragorn1.2.38.c:7316:32: style: Checking if unsigned expression 'abondtype&0xf' is less than zero. [unsignedLessThanZero]
aragorn1.2.38/aragorn1.2.38.c:7317:33: style: Checking if unsigned expression 'cbondtype&0xf' is less than zero. [unsignedLessThanZero]
aragorn1.2.38/aragorn1.2.38.c:4123:23: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]
aragorn1.2.38/aragorn1.2.38.c:3604:3: style: Label 'SC' is not used. [unusedLabel]
aragorn1.2.38/aragorn1.2.38.c:3699:16: style: Local variable 'aa' shadows outer function [shadowFunction]
aragorn1.2.38/aragorn1.2.38.c:3690:7: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:3699:16: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:5147:10: style: Local variable 'gc' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:850:7: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:5147:10: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:5429:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:1047:10: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:5429:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:5462:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:1047:10: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:5462:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:5527:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:1047:10: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:5527:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:5643:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:1047:10: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:5643:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:5782:17: style: Local variable 'aa' shadows outer function [shadowFunction]
aragorn1.2.38/aragorn1.2.38.c:3690:7: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:5782:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:6270:42: style: Local variable 'stem_energy' shadows outer function [shadowFunction]
aragorn1.2.38/aragorn1.2.38.c:5426:8: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:6270:42: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:6347:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:1047:10: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:6347:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:9347:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:1047:10: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:9347:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:9454:17: style: Local variable 'bem' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:1047:10: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:9454:17: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:10136:10: style: Local variable 'gc' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:850:7: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:10136:10: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:10208:10: style: Local variable 'gc' shadows outer variable [shadowVariable]
aragorn1.2.38/aragorn1.2.38.c:850:7: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:10208:10: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:10866:25: style: Local variable 'overlap' shadows outer function [shadowFunction]
aragorn1.2.38/aragorn1.2.38.c:6094:6: note: Shadowed declaration
aragorn1.2.38/aragorn1.2.38.c:10866:25: note: Shadow variable
aragorn1.2.38/aragorn1.2.38.c:3581:14: style: Variable 'map' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3649:15: style: Variable 'base' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3683:15: style: Variable 'base' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3746:17: style: Variable 'score' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3777:23: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3778:23: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3779:23: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3780:23: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3925:14: style: Variable 'ux' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3926:14: style: Variable 'uy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3927:14: style: Variable 'vx' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3928:14: style: Variable 'vy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4021:15: style: Variable 'base1' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4022:15: style: Variable 'base2' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4023:14: style: Variable 'score' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4037:14: style: Variable 'ux' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4038:14: style: Variable 'uy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4039:14: style: Variable 'vx' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4040:14: style: Variable 'vy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4089:15: style: Variable 'bond1' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4090:15: style: Variable 'bond2' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4193:14: style: Variable 'ux' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4194:14: style: Variable 'uy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4195:14: style: Variable 'vx' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4196:14: style: Variable 'vy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4265:14: style: Variable 'ux' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4266:14: style: Variable 'uy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4267:14: style: Variable 'vx' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4268:14: style: Variable 'vy' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4380:15: style: Variable 'bond2' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4455:15: style: Variable 'bond2' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:4759:15: style: Variable 'trnatype' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5284:23: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5285:23: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5286:23: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5287:23: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5345:23: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5346:23: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5347:23: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5348:23: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5388:23: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5389:23: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5390:23: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5391:23: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5469:17: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5470:17: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5471:17: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5472:17: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5502:14: style: Variable 'gtem' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5503:17: style: Variable 'tagend_score' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5504:14: style: Variable 'nps' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5534:17: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5535:17: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5536:17: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5537:17: style: Variable 'K' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5538:17: style: Variable 'R' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5539:17: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5540:17: style: Variable 'Y' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5541:17: style: Variable 'nA' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5542:17: style: Variable 'nV' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5543:17: style: Variable 'nM' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5650:17: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5651:17: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5652:17: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5653:17: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5716:23: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5717:23: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5718:23: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5719:23: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5785:14: style: Variable 'nps' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5799:17: style: Variable 'score' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5800:23: style: Variable 'tem' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5803:14: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5804:14: style: Variable 'V' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:5805:14: style: Variable 'M' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6281:14: style: Variable 'cAI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6283:14: style: Variable 'cRI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6284:14: style: Variable 'cTI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6285:14: style: Variable 'cYI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6287:14: style: Variable 'CI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6288:14: style: Variable 'GI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6294:23: style: Variable 'At' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6295:23: style: Variable 'Ct' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6296:23: style: Variable 'Gt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6297:23: style: Variable 'Tt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6298:23: style: Variable 'cAt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6299:23: style: Variable 'cCt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6300:23: style: Variable 'cGt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6301:23: style: Variable 'cTt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6302:23: style: Variable 'aAt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6303:23: style: Variable 'aCt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6304:23: style: Variable 'aGt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6305:23: style: Variable 'aTt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6306:23: style: Variable 'dAt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6307:23: style: Variable 'dCt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6308:23: style: Variable 'dGt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6309:23: style: Variable 'dTt' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6310:23: style: Variable 'clmotif' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6319:17: style: Variable 'dA' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6320:17: style: Variable 'dT' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6321:17: style: Variable 'C' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6322:17: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6323:17: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6324:17: style: Variable 'AX' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6325:17: style: Variable 'AX37' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6326:17: style: Variable 'AXX' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6327:17: style: Variable 'AXX37' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6328:17: style: Variable 'AX7' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6329:17: style: Variable 'CX' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6331:17: style: Variable 'CX7' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6332:17: style: Variable 'TX' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6335:17: style: Variable 'tC' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6336:17: style: Variable 'tG' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6337:17: style: Variable 'tT' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6338:17: style: Variable 'cA' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6340:17: style: Variable 'cR' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6341:17: style: Variable 'cT' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6342:17: style: Variable 'cY' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:6343:17: style: Variable 'loop_stab' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9338:14: style: Variable 'gtem' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9339:17: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9340:17: style: Variable 'Ar' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9341:17: style: Variable 'Cr' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9342:17: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9343:17: style: Variable 'Ga' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9344:17: style: Variable 'K' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9345:17: style: Variable 'Tr' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9445:14: style: Variable 'gtem' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9447:17: style: Variable 'A' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9448:17: style: Variable 'Ar' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9449:17: style: Variable 'Cr' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9450:17: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9451:17: style: Variable 'Ga' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9452:17: style: Variable 'K' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9453:17: style: Variable 'Tr' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9598:23: style: Variable 'TT' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9600:23: style: Variable 'GG' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9603:23: style: Variable 'cA' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9604:23: style: Variable 'cC' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9605:23: style: Variable 'cG' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9606:23: style: Variable 'cT' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9607:14: style: Variable 'yic' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9608:14: style: Variable 'tic' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9609:14: style: Variable 'a1ic' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9610:14: style: Variable 'a2ic' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9611:14: style: Variable 'a3ic' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9612:14: style: Variable 'ric' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9613:14: style: Variable 'goffb' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9614:14: style: Variable 'goffe' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9618:17: style: Variable 'G' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9619:17: style: Variable 'T' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9620:17: style: Variable 'Y' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9621:17: style: Variable 'R' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9622:17: style: Variable 'YP' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9623:17: style: Variable 'RP' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9624:17: style: Variable 'RI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9625:17: style: Variable 'GI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9626:17: style: Variable 'YI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9627:17: style: Variable 'AI' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9628:17: style: Variable 'GC' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9629:17: style: Variable 'G3' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9630:17: style: Variable 'dR' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9631:17: style: Variable 'RH' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9632:17: style: Variable 'AGT' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:9633:17: style: Variable 'dT' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:10077:14: style: Variable 'codonorder' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:11399:15: style: Variable 'genecodetag' can be declared with const [constVariable]
aragorn1.2.38/aragorn1.2.38.c:3072:29: style: Parameter 'k' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:3108:35: style: Parameter 'k' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:3137:22: style: Parameter 'line' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:3253:34: style: Parameter 'from2' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:3690:15: style: Parameter 'anticodon' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:3698:22: style: Parameter 'codon' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:3707:22: style: Parameter 'codon' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:3717:22: style: Parameter 'codon' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:6094:31: style: Parameter 'sort' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:6213:17: style: Parameter 's' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:9335:24: style: Parameter 'seq' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:9442:25: style: Parameter 'seq' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:9550:48: style: Parameter 'seq' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:10462:44: style: Parameter 'sort' can be declared with const [constParameter]
aragorn1.2.38/aragorn1.2.38.c:673:22: style: struct member 'mt_cds_codon::frame' is never used. [unusedStructMember]
aragorn1.2.38/aragorn1.2.38.c:674:22: style: struct member 'mt_cds_codon::codon' is never used. [unusedStructMember]
aragorn1.2.38/aragorn1.2.38.c:675:22: style: struct member 'mt_cds_codon::win' is never used. [unusedStructMember]
aragorn1.2.38/aragorn1.2.38.c:696:22: style: struct member 'cds_codon::frame' is never used. [unusedStructMember]
aragorn1.2.38/aragorn1.2.38.c:697:22: style: struct member 'cds_codon::codon' is never used. [unusedStructMember]
aragorn1.2.38/aragorn1.2.38.c:698:22: style: struct member 'cds_codon::win' is never used. [unusedStructMember]
aragorn1.2.38/aragorn1.2.38.c:3375:9: style: Unused variable: ic [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:4580:5: style: Unused variable: nn [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:4708:7: style: Unused variable: i [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:5258:10: style: Unused variable: tpe [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:5258:15: style: Unused variable: sb [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:5258:19: style: Unused variable: se [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:5270:10: style: Unused variable: tpe [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:5270:15: style: Unused variable: sb [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:5270:19: style: Unused variable: se [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:6157:7: style: Unused variable: i [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:6259:43: style: Unused variable: ser [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:6271:10: style: Unused variable: darmthresh [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:9423:9: style: Variable 'as' is assigned a value that is never used. [unreadVariable]
aragorn1.2.38/aragorn1.2.38.c:9529:9: style: Variable 'as' is assigned a value that is never used. [unreadVariable]
aragorn1.2.38/aragorn1.2.38.c:9570:14: style: Variable 'as' is assigned a value that is never used. [unreadVariable]
aragorn1.2.38/aragorn1.2.38.c:10209:11: style: Variable 'f' is assigned a value that is never used. [unreadVariable]
aragorn1.2.38/aragorn1.2.38.c:10352:15: style: Unused variable: q [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:10354:9: style: Unused variable: s [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:10437:6: style: Unused variable: nm [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:10536:7: style: Unused variable: ld [unusedVariable]
aragorn1.2.38/aragorn1.2.38.c:10539:53: style: Unused variable: s [unusedVariable]
diff:
head aragorn1.2.38/aragorn1.2.38.c:3129:12: style: Condition 'c=='\t'' is always false [knownConditionTrueFalse]
2.6 aragorn1.2.38/aragorn1.2.38.c:3129:12: style: Condition 'c=='\t'' is always false [knownConditionTrueFalse]
     aragorn1.2.38/aragorn1.2.38.c:3128:11: note: Assuming that condition 'c=='\t'' is not redundant
     aragorn1.2.38/aragorn1.2.38.c:3129:12: note: Condition 'c=='\t'' is always false
head aragorn1.2.38/aragorn1.2.38.c:4123:23: portability: Shifting a negative value is technically undefined behaviour [shiftNegativeLHS]


DONE